Wall clock time and date at job start Mon Mar 30 2020 00:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00071 * 2 1 4 4 C 1.53001 * 109.47111 * 269.99860 * 3 2 1 5 5 H 1.08998 * 109.47387 * 305.00136 * 4 3 2 6 6 O 1.42904 * 109.46758 * 65.00128 * 4 3 2 7 7 C 1.52992 * 109.47089 * 184.99815 * 4 3 2 8 8 N 1.46495 * 109.47202 * 179.97438 * 7 4 3 9 9 C 1.36946 * 120.00100 * 180.02562 * 8 7 4 10 10 H 1.07999 * 120.00065 * 0.02562 * 9 8 7 11 11 C 1.38809 * 119.99855 * 180.02562 * 9 8 7 12 12 N 1.31613 * 119.99875 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00324 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.46626 * 90.00158 * 13 11 9 15 15 H 1.48493 * 109.47536 * 210.00468 * 13 11 9 16 16 H 1.48500 * 109.46751 * 330.00718 * 13 11 9 17 17 C 1.34778 * 119.99733 * 179.97438 * 2 1 3 18 18 O 1.21683 * 119.99967 * 183.48311 * 17 2 1 19 19 C 1.46719 * 120.00232 * 3.48900 * 17 2 1 20 20 C 1.36339 * 126.64699 * 173.18877 * 19 17 2 21 21 N 1.33692 * 107.45624 * 179.73281 * 20 19 17 22 22 C 1.30620 * 108.99512 * 0.24287 * 21 20 19 23 23 O 1.33670 * 109.15123 * 0.02562 * 22 21 20 24 24 H 1.09004 * 109.47061 * 264.01090 * 1 2 3 25 25 H 1.09001 * 109.46937 * 24.00962 * 1 2 3 26 26 H 1.09000 * 109.47470 * 144.01283 * 1 2 3 27 27 H 1.08998 * 109.46935 * 30.00055 * 3 2 1 28 28 H 1.09001 * 109.46921 * 150.00297 * 3 2 1 29 29 H 0.96697 * 113.99945 * 59.99862 * 6 4 3 30 30 H 1.08998 * 109.47268 * 300.00394 * 7 4 3 31 31 H 1.09007 * 109.46810 * 60.00381 * 7 4 3 32 32 H 0.96996 * 120.00162 * 0.02562 * 8 7 4 33 33 H 0.97001 * 120.00388 * 179.97438 * 12 11 9 34 34 H 1.08005 * 126.27074 * 359.97438 * 20 19 17 35 35 H 1.07997 * 125.42246 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9642 0.9131 -1.9816 6 8 1.2060 1.9935 -2.0814 7 6 3.3238 2.9680 -1.4443 8 7 3.5685 3.3906 -2.8255 9 6 4.3296 4.5008 -3.0773 10 1 4.7498 5.0647 -2.2576 11 6 4.5610 4.9015 -4.3860 12 7 5.2929 5.9682 -4.6280 13 14 3.8348 3.9258 -5.8038 14 1 2.4921 4.4644 -6.1389 15 1 4.7231 4.0383 -6.9885 16 1 3.7119 2.4990 -5.4111 17 6 2.1388 -1.1672 0.0005 18 8 3.3540 -1.1682 0.0645 19 6 1.4072 -2.4367 -0.0762 20 6 1.9481 -3.6805 -0.2150 21 7 0.9385 -4.5567 -0.2365 22 6 -0.1896 -3.9083 -0.1230 23 8 0.0646 -2.5996 -0.0262 24 1 -0.3633 -0.1072 1.0221 25 1 -0.3633 0.9388 -0.4182 26 1 -0.3634 -0.8315 -0.6038 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1383 0.5138 29 1 0.6955 2.6949 -1.6542 30 1 2.8121 3.7653 -0.9053 31 1 4.2746 2.7520 -0.9570 32 1 3.1914 2.8839 -3.5617 33 1 5.4549 6.2481 -5.5425 34 1 2.9997 -3.9153 -0.2896 35 1 -1.1714 -4.3580 -0.1095 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507496250.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:01 Heat of formation + Delta-G solvation = -30.372702 kcal Electronic energy + Delta-G solvation = -20470.717057 eV Core-core repulsion = 17086.011401 eV Total energy + Delta-G solvation = -3384.705655 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.79391 -40.05746 -37.72246 -35.82736 -34.96214 -34.18294 -31.65552 -31.04637 -29.71130 -27.10835 -26.14878 -23.81726 -23.11473 -22.27185 -21.33821 -20.37762 -18.11464 -17.73906 -17.39804 -17.16034 -16.69715 -16.08442 -15.44116 -15.09542 -14.68858 -14.49916 -14.10568 -13.91816 -13.65595 -13.39147 -13.16143 -12.64152 -12.42444 -12.27276 -11.85017 -11.74294 -11.26191 -11.13031 -10.95172 -10.84191 -10.55060 -10.22445 -9.95175 -9.58896 -9.49396 -8.91790 -8.75070 -7.24064 -5.76786 -3.12516 0.50082 2.06869 2.09595 2.69737 2.85246 3.41393 3.47346 3.48108 3.75375 4.25767 4.49563 4.59840 4.61538 4.78517 4.87958 5.00292 5.13395 5.14433 5.22459 5.43849 5.51513 5.59366 5.61242 5.80368 5.81764 5.86344 6.16412 6.43069 6.57691 6.90112 7.17729 7.70100 7.80829 7.99443 8.42079 9.21828 9.94137 10.14135 11.41363 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031468 B = 0.003953 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.582966 B = 7081.897651 C = 7249.490513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.595 5.595 3 C 0.086 3.914 4 C 0.081 3.919 5 H 0.101 0.899 6 O -0.555 6.555 7 C 0.131 3.869 8 N -0.749 5.749 9 C -0.247 4.247 10 H 0.090 0.910 11 C 0.006 3.994 12 N -0.934 5.934 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 C 0.602 3.398 18 O -0.512 6.512 19 C -0.101 4.101 20 C 0.050 3.950 21 N -0.494 5.494 22 C 0.190 3.810 23 O -0.186 6.186 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.370 0.630 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.366 0.634 33 H 0.260 0.740 34 H 0.197 0.803 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.315 -17.602 12.687 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.327 5.327 3 C -0.037 4.037 4 C 0.021 3.979 5 H 0.119 0.881 6 O -0.359 6.359 7 C 0.003 3.997 8 N -0.396 5.396 9 C -0.377 4.377 10 H 0.107 0.893 11 C -0.190 4.190 12 N -0.582 5.582 13 Si 0.717 3.283 14 H -0.210 1.210 15 H -0.218 1.218 16 H -0.203 1.203 17 C 0.388 3.612 18 O -0.389 6.389 19 C -0.156 4.156 20 C -0.093 4.093 21 N -0.222 5.222 22 C -0.034 4.034 23 O -0.072 6.072 24 H 0.075 0.925 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.217 0.783 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.200 0.800 33 H 0.070 0.930 34 H 0.214 0.786 35 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -14.340 -18.445 12.313 26.410 hybrid contribution -0.838 0.455 -0.672 1.167 sum -15.178 -17.990 11.641 26.259 Atomic orbital electron populations 1.22030 0.78438 1.04265 1.01796 1.47612 1.07706 1.05537 1.71802 1.22342 0.98796 0.83893 0.98621 1.22631 0.85220 0.98382 0.91690 0.88144 1.86597 1.32424 1.59287 1.57621 1.21184 0.96897 0.92879 0.88778 1.42572 1.62932 1.32762 1.01295 1.19049 1.23549 1.01437 0.93652 0.89254 1.24660 0.99825 0.97565 0.96960 1.69703 1.42973 1.25945 1.19542 0.86506 0.78754 0.80076 0.82961 1.21016 1.21753 1.20297 1.16512 0.86098 0.81050 0.77536 1.90930 1.11719 1.85766 1.50450 1.23223 0.80316 0.97953 1.14100 1.23631 1.00641 0.86747 0.98249 1.70464 0.98401 1.34759 1.18587 1.28471 1.00694 0.77193 0.97084 1.84725 1.24414 1.29439 1.68635 0.92502 0.89745 0.90253 0.89334 0.88126 0.78298 0.95239 0.94504 0.80034 0.93022 0.78588 0.72956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 9.42 59.85 0.56 1.20 16 2 N -0.60 -6.77 2.84 -183.11 -0.52 -7.29 16 3 C 0.09 1.01 5.06 -4.04 -0.02 0.99 16 4 C 0.08 1.23 3.30 -26.73 -0.09 1.14 16 5 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 6 O -0.55 -8.14 12.02 -35.23 -0.42 -8.56 16 7 C 0.13 2.45 5.92 -4.05 -0.02 2.43 16 8 N -0.75 -18.24 5.30 -59.91 -0.32 -18.56 16 9 C -0.25 -7.13 10.47 -15.06 -0.16 -7.29 16 10 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 11 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 12 N -0.93 -29.76 13.97 55.49 0.78 -28.98 16 13 Si 0.89 22.93 27.74 -169.99 -4.71 18.21 16 14 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 16 H -0.28 -6.92 6.52 56.52 0.37 -6.55 16 17 C 0.60 7.96 7.64 -12.83 -0.10 7.86 16 18 O -0.51 -8.30 16.46 5.20 0.09 -8.22 16 19 C -0.10 -1.13 6.79 -36.84 -0.25 -1.38 16 20 C 0.05 0.54 11.67 -17.43 -0.20 0.34 16 21 N -0.49 -4.95 11.26 -14.67 -0.17 -5.12 16 22 C 0.19 1.29 13.21 52.25 0.69 1.98 16 23 O -0.19 -1.60 7.49 4.40 0.03 -1.56 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.62 7.24 -51.93 -0.38 0.24 16 26 H 0.08 0.67 5.41 -51.93 -0.28 0.39 16 27 H 0.09 0.79 8.07 -51.93 -0.42 0.37 16 28 H 0.10 1.27 7.37 -51.93 -0.38 0.88 16 29 H 0.37 4.08 9.04 45.56 0.41 4.49 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.37 9.01 5.41 -40.82 -0.22 8.79 16 33 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 34 H 0.20 1.91 8.06 -52.48 -0.42 1.49 16 35 H 0.25 0.32 8.06 -52.49 -0.42 -0.10 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -36.87 304.39 -3.74 -40.61 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -3.40 Total: 7.53 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 0.32 Total: 7.35 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.23 Total: -59.95 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.30 Total: -18.34 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.71 Total: 18.21 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -36.87 -3.74 -40.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507496250.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.232 kcal (2) G-P(sol) polarization free energy of solvation -36.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds