Wall clock time and date at job start Mon Mar 30 2020 00:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00071 * 2 1 4 4 C 1.53001 * 109.47111 * 269.99860 * 3 2 1 5 5 H 1.08998 * 109.47387 * 305.00136 * 4 3 2 6 6 O 1.42904 * 109.46758 * 65.00128 * 4 3 2 7 7 C 1.52992 * 109.47089 * 184.99815 * 4 3 2 8 8 N 1.46495 * 109.47202 * 179.97438 * 7 4 3 9 9 C 1.36946 * 120.00100 * 180.02562 * 8 7 4 10 10 H 1.07999 * 120.00065 * 0.02562 * 9 8 7 11 11 C 1.38809 * 119.99855 * 180.02562 * 9 8 7 12 12 N 1.31613 * 119.99875 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00324 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.46626 * 90.00158 * 13 11 9 15 15 H 1.48493 * 109.47536 * 210.00468 * 13 11 9 16 16 H 1.48500 * 109.46751 * 330.00718 * 13 11 9 17 17 C 1.34778 * 119.99733 * 179.97438 * 2 1 3 18 18 O 1.21683 * 119.99967 * 183.48311 * 17 2 1 19 19 C 1.46719 * 120.00232 * 3.48900 * 17 2 1 20 20 C 1.36339 * 126.64699 * 173.18877 * 19 17 2 21 21 N 1.33692 * 107.45624 * 179.73281 * 20 19 17 22 22 C 1.30620 * 108.99512 * 0.24287 * 21 20 19 23 23 O 1.33670 * 109.15123 * 0.02562 * 22 21 20 24 24 H 1.09004 * 109.47061 * 264.01090 * 1 2 3 25 25 H 1.09001 * 109.46937 * 24.00962 * 1 2 3 26 26 H 1.09000 * 109.47470 * 144.01283 * 1 2 3 27 27 H 1.08998 * 109.46935 * 30.00055 * 3 2 1 28 28 H 1.09001 * 109.46921 * 150.00297 * 3 2 1 29 29 H 0.96697 * 113.99945 * 59.99862 * 6 4 3 30 30 H 1.08998 * 109.47268 * 300.00394 * 7 4 3 31 31 H 1.09007 * 109.46810 * 60.00381 * 7 4 3 32 32 H 0.96996 * 120.00162 * 0.02562 * 8 7 4 33 33 H 0.97001 * 120.00388 * 179.97438 * 12 11 9 34 34 H 1.08005 * 126.27074 * 359.97438 * 20 19 17 35 35 H 1.07997 * 125.42246 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9642 0.9131 -1.9816 6 8 1.2060 1.9935 -2.0814 7 6 3.3238 2.9680 -1.4443 8 7 3.5685 3.3906 -2.8255 9 6 4.3296 4.5008 -3.0773 10 1 4.7498 5.0647 -2.2576 11 6 4.5610 4.9015 -4.3860 12 7 5.2929 5.9682 -4.6280 13 14 3.8348 3.9258 -5.8038 14 1 2.4921 4.4644 -6.1389 15 1 4.7231 4.0383 -6.9885 16 1 3.7119 2.4990 -5.4111 17 6 2.1388 -1.1672 0.0005 18 8 3.3540 -1.1682 0.0645 19 6 1.4072 -2.4367 -0.0762 20 6 1.9481 -3.6805 -0.2150 21 7 0.9385 -4.5567 -0.2365 22 6 -0.1896 -3.9083 -0.1230 23 8 0.0646 -2.5996 -0.0262 24 1 -0.3633 -0.1072 1.0221 25 1 -0.3633 0.9388 -0.4182 26 1 -0.3634 -0.8315 -0.6038 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1383 0.5138 29 1 0.6955 2.6949 -1.6542 30 1 2.8121 3.7653 -0.9053 31 1 4.2746 2.7520 -0.9570 32 1 3.1914 2.8839 -3.5617 33 1 5.4549 6.2481 -5.5425 34 1 2.9997 -3.9153 -0.2896 35 1 -1.1714 -4.3580 -0.1095 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507496250.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:01 Heat of formation + Delta-G solvation = -63.389267 kcal Electronic energy + Delta-G solvation = -20472.148762 eV Core-core repulsion = 17086.011401 eV Total energy + Delta-G solvation = -3386.137361 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.47761 -41.02886 -38.95249 -36.80309 -36.06378 -35.65872 -33.53005 -32.10905 -30.89235 -28.11715 -27.34755 -25.04467 -23.92967 -23.54912 -22.81178 -21.24655 -19.83499 -18.88419 -18.17752 -17.90764 -17.79827 -17.05186 -16.65259 -16.53152 -16.21658 -15.41778 -15.30036 -15.06337 -14.94410 -14.56387 -14.40939 -13.94860 -13.84750 -13.30702 -13.23211 -12.85919 -12.69130 -12.54586 -12.32207 -12.00319 -11.89327 -11.87026 -11.51133 -11.19551 -11.04538 -10.28718 -9.68333 -9.33772 -8.06240 -5.39297 -0.25128 1.32307 1.36653 1.38118 1.39773 1.46050 1.86405 2.01070 2.45347 3.23391 3.24690 3.32482 3.48088 3.63696 3.85162 3.94061 4.05351 4.17960 4.29326 4.40785 4.49874 4.55053 4.63346 4.73529 4.89991 4.96147 5.13324 5.26094 5.32296 5.71439 6.04435 6.17932 6.48580 6.77814 6.84516 7.04938 7.81247 7.99148 9.15143 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031468 B = 0.003953 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.582966 B = 7081.897651 C = 7249.490513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.593 5.593 3 C 0.094 3.906 4 C 0.100 3.900 5 H 0.071 0.929 6 O -0.562 6.562 7 C 0.125 3.875 8 N -0.755 5.755 9 C -0.236 4.236 10 H 0.061 0.939 11 C -0.061 4.061 12 N -0.981 5.981 13 Si 0.956 3.044 14 H -0.274 1.274 15 H -0.294 1.294 16 H -0.265 1.265 17 C 0.595 3.405 18 O -0.557 6.557 19 C -0.121 4.121 20 C 0.046 3.954 21 N -0.528 5.528 22 C 0.222 3.778 23 O -0.181 6.181 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.389 0.611 30 H 0.049 0.951 31 H 0.030 0.970 32 H 0.366 0.634 33 H 0.259 0.741 34 H 0.195 0.805 35 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.471 -19.111 13.162 29.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.322 5.322 3 C -0.029 4.029 4 C 0.039 3.961 5 H 0.089 0.911 6 O -0.370 6.370 7 C -0.002 4.002 8 N -0.401 5.401 9 C -0.367 4.367 10 H 0.079 0.921 11 C -0.252 4.252 12 N -0.632 5.632 13 Si 0.784 3.216 14 H -0.200 1.200 15 H -0.221 1.221 16 H -0.190 1.190 17 C 0.383 3.617 18 O -0.437 6.437 19 C -0.177 4.177 20 C -0.097 4.097 21 N -0.256 5.256 22 C -0.002 4.002 23 O -0.068 6.068 24 H 0.095 0.905 25 H 0.116 0.884 26 H 0.098 0.902 27 H 0.144 0.856 28 H 0.107 0.893 29 H 0.238 0.762 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.199 0.801 33 H 0.068 0.932 34 H 0.212 0.788 35 H 0.323 0.677 Dipole moment (debyes) X Y Z Total from point charges -17.556 -19.975 12.833 29.528 hybrid contribution 0.051 0.880 -0.714 1.134 sum -17.505 -19.094 12.119 28.599 Atomic orbital electron populations 1.22248 0.76235 1.05031 1.03246 1.47707 1.09014 1.04737 1.70768 1.22210 0.99432 0.85091 0.96168 1.22252 0.84745 0.95509 0.93558 0.91054 1.86563 1.31928 1.60217 1.58258 1.21425 0.97654 0.95159 0.85934 1.42614 1.62322 1.31494 1.03700 1.19077 1.22790 1.01960 0.92891 0.92080 1.25456 1.01000 0.98943 0.99849 1.69867 1.45183 1.28115 1.20037 0.85395 0.78005 0.79074 0.79150 1.20004 1.22060 1.18987 1.16813 0.85836 0.82117 0.76961 1.90894 1.13601 1.86579 1.52640 1.22779 0.81390 0.97049 1.16455 1.23744 1.01142 0.87121 0.97651 1.70500 0.99213 1.35223 1.20666 1.29717 1.01704 0.76221 0.92594 1.84727 1.22886 1.30365 1.68786 0.90492 0.88396 0.90242 0.85613 0.89293 0.76164 0.93266 0.95162 0.80073 0.93217 0.78829 0.67684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 9.42 127.77 1.20 2.18 16 2 N -0.59 -12.40 2.84 -851.46 -2.42 -14.81 16 3 C 0.09 2.03 5.06 86.38 0.44 2.46 16 4 C 0.10 2.90 3.30 30.59 0.10 3.00 16 5 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 6 O -0.56 -14.98 12.02 -148.98 -1.79 -16.77 16 7 C 0.13 4.57 5.92 86.38 0.51 5.08 16 8 N -0.76 -36.25 5.30 -343.46 -1.82 -38.07 16 9 C -0.24 -13.76 10.47 84.03 0.88 -12.87 16 10 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 11 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 12 N -0.98 -63.79 13.97 21.65 0.30 -63.49 16 13 Si 0.96 47.47 27.74 68.60 1.90 49.37 16 14 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 16 H -0.26 -12.44 6.52 99.48 0.65 -11.79 16 17 C 0.59 15.52 7.64 86.46 0.66 16.18 16 18 O -0.56 -18.62 16.46 -4.30 -0.07 -18.69 16 19 C -0.12 -2.60 6.79 24.04 0.16 -2.44 16 20 C 0.05 0.98 11.67 83.97 0.98 1.96 16 21 N -0.53 -9.62 11.26 -315.09 -3.55 -13.17 16 22 C 0.22 2.23 13.21 130.42 1.72 3.95 16 23 O -0.18 -2.60 7.49 -7.16 -0.05 -2.66 16 24 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.10 1.04 7.24 -2.39 -0.02 1.03 16 26 H 0.08 1.08 5.41 -2.39 -0.01 1.07 16 27 H 0.13 1.78 8.07 -2.39 -0.02 1.76 16 28 H 0.09 2.18 7.37 -2.39 -0.02 2.16 16 29 H 0.39 7.14 9.04 -74.06 -0.67 6.47 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.37 17.49 5.41 -92.71 -0.50 16.99 16 33 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 34 H 0.19 3.96 8.06 -2.91 -0.02 3.94 16 35 H 0.31 -0.90 8.06 -2.91 -0.02 -0.93 16 Total: -1.00 -82.13 304.39 -0.46 -82.59 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -0.09 Total: 19.39 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 7.13 Total: 16.30 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -7.48 Total: -129.54 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.92 Total: -38.11 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.90 Total: 49.37 kcal Total: -82.13 -0.46 -82.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507496250.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.199 kcal (2) G-P(sol) polarization free energy of solvation -82.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds