Wall clock time and date at job start Mon Mar 30 2020 00:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47160 * 2 1 4 4 C 1.50705 * 109.47120 * 240.00212 * 2 1 3 5 5 H 1.08000 * 119.99913 * 240.00031 * 4 2 1 6 6 C 1.37877 * 119.99821 * 59.99903 * 4 2 1 7 7 N 1.31515 * 120.00046 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99851 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47230 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47001 * 119.99825 * 8 6 4 11 11 H 1.48501 * 109.47135 * 239.99906 * 8 6 4 12 12 C 1.50696 * 109.47416 * 120.00086 * 2 1 3 13 13 O 1.21281 * 119.99825 * 91.67802 * 12 2 1 14 14 N 1.34774 * 120.00339 * 271.68541 * 12 2 1 15 15 C 1.47445 * 126.78049 * 175.06706 * 14 12 2 16 16 C 1.53933 * 106.18626 * 149.08829 * 15 14 12 17 17 H 1.08996 * 109.56839 * 137.06670 * 16 15 14 18 18 C 1.54140 * 109.07989 * 257.56292 * 16 15 14 19 19 S 1.83912 * 102.70913 * 141.41119 * 18 16 15 20 20 C 1.83920 * 94.80254 * 325.31761 * 19 18 16 21 21 C 1.53303 * 105.62229 * 18.58383 * 16 15 14 22 22 C 1.52997 * 110.03548 * 118.69291 * 21 16 15 23 23 C 1.47292 * 126.69243 * 355.03453 * 14 12 2 24 24 H 1.08994 * 109.46839 * 54.02533 * 1 2 3 25 25 H 1.08998 * 109.47193 * 174.02779 * 1 2 3 26 26 H 1.08998 * 109.46832 * 294.02993 * 1 2 3 27 27 H 0.97003 * 119.99819 * 180.02562 * 7 6 4 28 28 H 1.08994 * 110.09797 * 29.90570 * 15 14 12 29 29 H 1.08999 * 110.16233 * 268.29771 * 15 14 12 30 30 H 1.08998 * 110.76148 * 259.72041 * 18 16 15 31 31 H 1.09002 * 110.76169 * 22.92239 * 18 16 15 32 32 H 1.08997 * 110.76828 * 276.37148 * 20 19 18 33 33 H 1.09004 * 110.76135 * 152.98115 * 20 19 18 34 34 H 1.08999 * 109.47224 * 303.02136 * 22 21 16 35 35 H 1.09000 * 109.47173 * 63.01761 * 22 21 16 36 36 H 1.08992 * 109.47313 * 183.01952 * 22 21 16 37 37 H 1.08997 * 110.11829 * 91.71049 * 23 14 12 38 38 H 1.08999 * 110.11575 * 330.12167 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1202 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1872 -4.8166 12 6 2.0324 -0.7104 1.2304 13 8 2.2636 -1.9003 1.1916 14 7 2.2247 -0.0235 2.3739 15 6 2.6110 -0.5798 3.6836 16 6 3.4338 0.5137 4.3885 17 1 3.1319 0.5811 5.4336 18 6 4.9306 0.1581 4.2933 19 16 5.7187 1.7963 4.0149 20 6 4.3340 2.4638 3.0052 21 6 3.0960 1.8192 3.6591 22 6 2.4531 2.8111 4.6305 23 6 2.0906 1.4315 2.5597 24 1 -0.3633 0.6037 -0.8316 25 1 -0.3633 -1.0221 -0.1069 26 1 -0.3633 0.4185 0.9386 27 1 0.7089 1.1615 -3.4844 28 1 3.2172 -1.4751 3.5462 29 1 1.7220 -0.8156 4.2686 30 1 5.2820 -0.2866 5.2243 31 1 5.1161 -0.5109 3.4530 32 1 4.4285 2.1515 1.9652 33 1 4.2893 3.5503 3.0809 34 1 1.5671 2.3598 5.0772 35 1 3.1659 3.0655 5.4148 36 1 2.1681 3.7145 4.0916 37 1 1.0768 1.6772 2.8755 38 1 2.3304 1.9515 1.6323 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537368856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:20 Heat of formation + Delta-G solvation = -42.762238 kcal Electronic energy + Delta-G solvation = -19451.037959 eV Core-core repulsion = 16612.088267 eV Total energy + Delta-G solvation = -2838.949692 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.16727 -37.78067 -33.78594 -33.41798 -32.05302 -30.36533 -27.79869 -26.26491 -26.06979 -25.20643 -22.83284 -21.49065 -19.05559 -18.73113 -16.59953 -16.32191 -15.96922 -15.71139 -14.98981 -14.45246 -14.17141 -14.11960 -13.92911 -13.37408 -12.93578 -12.70984 -12.58575 -12.21754 -11.89111 -11.81536 -11.66892 -11.51365 -11.05093 -11.01722 -10.98517 -10.86387 -10.69102 -10.67211 -10.27387 -10.05306 -9.99497 -9.01493 -8.65767 -8.37413 -8.13600 -7.74014 -6.07589 -4.10727 1.85318 2.22755 3.29888 3.37501 3.44225 3.59307 3.62710 4.28026 4.39010 4.42960 4.47253 4.79780 4.93583 5.06693 5.17015 5.26126 5.44029 5.52432 5.55019 5.58467 5.65423 5.74119 5.80731 5.89657 5.91792 6.01272 6.07896 6.16365 6.62583 6.77143 6.85280 6.96633 7.43115 7.71975 7.95165 8.08771 8.35217 8.94888 9.15022 9.54390 11.00252 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024832 B = 0.005499 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.327140 B = 5090.283898 C = 5227.369193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.036 3.964 3 H 0.045 0.955 4 C -0.501 4.501 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.541 3.459 13 O -0.545 6.545 14 N -0.630 5.630 15 C 0.107 3.893 16 C -0.095 4.095 17 H 0.097 0.903 18 C -0.057 4.057 19 S -0.307 6.307 20 C -0.052 4.052 21 C -0.073 4.073 22 C -0.134 4.134 23 C 0.115 3.885 24 H 0.091 0.909 25 H 0.035 0.965 26 H 0.010 0.990 27 H 0.261 0.739 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.847 5.473 14.955 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.015 3.985 3 H 0.063 0.937 4 C -0.540 4.540 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.333 3.667 13 O -0.420 6.420 14 N -0.367 5.367 15 C -0.017 4.017 16 C -0.116 4.116 17 H 0.116 0.884 18 C -0.205 4.205 19 S -0.079 6.079 20 C -0.200 4.200 21 C -0.076 4.076 22 C -0.192 4.192 23 C -0.010 4.010 24 H 0.109 0.891 25 H 0.055 0.945 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.985 5.342 15.036 16.447 hybrid contribution -0.742 -0.822 -1.151 1.597 sum 3.244 4.520 13.885 14.958 Atomic orbital electron populations 1.21656 0.96011 1.01025 0.99675 1.18864 0.94279 0.96484 0.88830 0.93732 1.21097 1.31311 1.12503 0.89078 0.91313 1.24925 0.95018 0.95015 0.99066 1.69889 1.36967 1.22994 1.23525 0.86410 0.78693 0.79789 0.82470 1.19576 1.20914 1.20980 1.21855 0.74726 0.87314 0.82770 1.90547 1.51273 1.16306 1.83873 1.48919 1.71305 1.07462 1.08994 1.22084 0.98074 0.96547 0.85024 1.22508 0.93939 0.94298 1.00827 0.88426 1.24258 0.94979 0.95667 1.05571 1.87823 1.33099 1.17669 1.69341 1.24379 0.91395 1.03106 1.01120 1.21864 0.95530 0.94611 0.95604 1.21909 1.00497 0.98232 0.98541 1.22246 0.97891 0.82475 0.98423 0.89070 0.94538 0.97087 0.92939 0.90209 0.91976 0.87824 0.88791 0.88496 0.87509 0.91972 0.91600 0.91800 0.91389 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.86 37.16 0.33 -2.64 16 2 C 0.04 0.91 2.27 -92.92 -0.21 0.69 16 3 H 0.04 1.11 6.52 -51.93 -0.34 0.77 16 4 C -0.50 -14.18 8.32 -34.44 -0.29 -14.46 16 5 H 0.07 2.06 7.10 -52.49 -0.37 1.69 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.84 11.39 55.43 0.63 -24.21 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.54 12.47 6.94 -10.99 -0.08 12.39 16 13 O -0.54 -14.38 16.13 5.56 0.09 -14.29 16 14 N -0.63 -11.14 3.33 -171.14 -0.57 -11.71 16 15 C 0.11 1.52 6.48 -3.04 -0.02 1.50 16 16 C -0.09 -1.06 3.06 -89.38 -0.27 -1.33 16 17 H 0.10 0.89 7.66 -51.93 -0.40 0.49 16 18 C -0.06 -0.66 6.82 37.75 0.26 -0.40 16 19 S -0.31 -3.93 23.26 -107.50 -2.50 -6.43 16 20 C -0.05 -0.62 6.36 37.75 0.24 -0.38 16 21 C -0.07 -0.83 0.87 -153.27 -0.13 -0.96 16 22 C -0.13 -1.16 7.87 37.16 0.29 -0.87 16 23 C 0.11 1.62 5.82 -3.12 -0.02 1.60 16 24 H 0.09 2.31 6.25 -51.93 -0.32 1.98 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.08 1.23 7.21 -51.93 -0.37 0.85 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.26 7.55 -51.93 -0.39 0.87 16 32 H 0.10 1.33 7.55 -51.93 -0.39 0.94 16 33 H 0.11 1.08 7.81 -51.93 -0.41 0.67 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.88 7.77 -51.93 -0.40 0.48 16 38 H 0.09 1.34 5.98 -51.93 -0.31 1.03 16 LS Contribution 310.64 15.07 4.68 4.68 Total: -1.00 -31.14 310.64 -8.49 -39.63 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.80 Total: -1.06 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 0.01 Total: -3.28 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.06 Total: -35.92 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.09 Total: -14.29 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -2.50 Total: -6.43 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.14 -8.49 -39.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537368856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.137 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds