Wall clock time and date at job start Mon Mar 30 2020 00:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47160 * 2 1 4 4 C 1.50705 * 109.47120 * 240.00212 * 2 1 3 5 5 H 1.08000 * 119.99913 * 240.00031 * 4 2 1 6 6 C 1.37877 * 119.99821 * 59.99903 * 4 2 1 7 7 N 1.31515 * 120.00046 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99851 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47230 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47001 * 119.99825 * 8 6 4 11 11 H 1.48501 * 109.47135 * 239.99906 * 8 6 4 12 12 C 1.50696 * 109.47416 * 120.00086 * 2 1 3 13 13 O 1.21281 * 119.99825 * 91.67802 * 12 2 1 14 14 N 1.34774 * 120.00339 * 271.68541 * 12 2 1 15 15 C 1.47445 * 126.78049 * 175.06706 * 14 12 2 16 16 C 1.53933 * 106.18626 * 149.08829 * 15 14 12 17 17 H 1.08996 * 109.56839 * 137.06670 * 16 15 14 18 18 C 1.54140 * 109.07989 * 257.56292 * 16 15 14 19 19 S 1.83912 * 102.70913 * 141.41119 * 18 16 15 20 20 C 1.83920 * 94.80254 * 325.31761 * 19 18 16 21 21 C 1.53303 * 105.62229 * 18.58383 * 16 15 14 22 22 C 1.52997 * 110.03548 * 118.69291 * 21 16 15 23 23 C 1.47292 * 126.69243 * 355.03453 * 14 12 2 24 24 H 1.08994 * 109.46839 * 54.02533 * 1 2 3 25 25 H 1.08998 * 109.47193 * 174.02779 * 1 2 3 26 26 H 1.08998 * 109.46832 * 294.02993 * 1 2 3 27 27 H 0.97003 * 119.99819 * 180.02562 * 7 6 4 28 28 H 1.08994 * 110.09797 * 29.90570 * 15 14 12 29 29 H 1.08999 * 110.16233 * 268.29771 * 15 14 12 30 30 H 1.08998 * 110.76148 * 259.72041 * 18 16 15 31 31 H 1.09002 * 110.76169 * 22.92239 * 18 16 15 32 32 H 1.08997 * 110.76828 * 276.37148 * 20 19 18 33 33 H 1.09004 * 110.76135 * 152.98115 * 20 19 18 34 34 H 1.08999 * 109.47224 * 303.02136 * 22 21 16 35 35 H 1.09000 * 109.47173 * 63.01761 * 22 21 16 36 36 H 1.08992 * 109.47313 * 183.01952 * 22 21 16 37 37 H 1.08997 * 110.11829 * 91.71049 * 23 14 12 38 38 H 1.08999 * 110.11575 * 330.12167 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1202 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1872 -4.8166 12 6 2.0324 -0.7104 1.2304 13 8 2.2636 -1.9003 1.1916 14 7 2.2247 -0.0235 2.3739 15 6 2.6110 -0.5798 3.6836 16 6 3.4338 0.5137 4.3885 17 1 3.1319 0.5811 5.4336 18 6 4.9306 0.1581 4.2933 19 16 5.7187 1.7963 4.0149 20 6 4.3340 2.4638 3.0052 21 6 3.0960 1.8192 3.6591 22 6 2.4531 2.8111 4.6305 23 6 2.0906 1.4315 2.5597 24 1 -0.3633 0.6037 -0.8316 25 1 -0.3633 -1.0221 -0.1069 26 1 -0.3633 0.4185 0.9386 27 1 0.7089 1.1615 -3.4844 28 1 3.2172 -1.4751 3.5462 29 1 1.7220 -0.8156 4.2686 30 1 5.2820 -0.2866 5.2243 31 1 5.1161 -0.5109 3.4530 32 1 4.4285 2.1515 1.9652 33 1 4.2893 3.5503 3.0809 34 1 1.5671 2.3598 5.0772 35 1 3.1659 3.0655 5.4148 36 1 2.1681 3.7145 4.0916 37 1 1.0768 1.6772 2.8755 38 1 2.3304 1.9515 1.6323 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537368856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:19 Heat of formation + Delta-G solvation = -61.283396 kcal Electronic energy + Delta-G solvation = -19451.841096 eV Core-core repulsion = 16612.088267 eV Total energy + Delta-G solvation = -2839.752829 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.44983 -39.36713 -35.82049 -34.76243 -33.19237 -32.24391 -28.72529 -27.45190 -27.29402 -27.22069 -24.36025 -22.82663 -20.32556 -20.08882 -18.35185 -17.95916 -17.35854 -16.86619 -16.76976 -15.84263 -15.57481 -15.39181 -15.04430 -14.63958 -14.55313 -14.23824 -13.82572 -13.43777 -13.33511 -12.99780 -12.86178 -12.80746 -12.71410 -12.63809 -12.58829 -12.29085 -12.11002 -11.97366 -11.85967 -11.73373 -11.08240 -11.05707 -10.63923 -10.33986 -9.56098 -8.76528 -8.19746 -6.30092 0.88167 1.25713 1.36733 1.38970 1.51593 1.84763 2.13011 2.43333 3.09878 3.32748 3.38610 3.47336 3.83588 4.00250 4.14141 4.18595 4.29007 4.51972 4.57283 4.60107 4.62021 4.65121 4.73065 4.80889 4.83745 4.90379 4.98702 5.01305 5.08580 5.18534 5.35156 5.42980 5.50698 5.67998 5.88161 6.14827 6.61262 6.76178 7.34077 7.43724 8.86702 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024832 B = 0.005499 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.327140 B = 5090.283898 C = 5227.369193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.034 3.966 3 H 0.041 0.959 4 C -0.531 4.531 5 H 0.040 0.960 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.271 1.271 12 C 0.538 3.462 13 O -0.591 6.591 14 N -0.627 5.627 15 C 0.102 3.898 16 C -0.084 4.084 17 H 0.134 0.866 18 C -0.053 4.053 19 S -0.327 6.327 20 C -0.050 4.050 21 C -0.064 4.064 22 C -0.128 4.128 23 C 0.107 3.893 24 H 0.073 0.927 25 H 0.018 0.982 26 H 0.043 0.957 27 H 0.267 0.733 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.479 6.806 16.784 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.013 3.987 3 H 0.059 0.941 4 C -0.569 4.569 5 H 0.058 0.942 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.779 3.221 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.196 1.196 12 C 0.330 3.670 13 O -0.471 6.471 14 N -0.361 5.361 15 C -0.021 4.021 16 C -0.104 4.104 17 H 0.152 0.848 18 C -0.201 4.201 19 S -0.099 6.099 20 C -0.198 4.198 21 C -0.067 4.067 22 C -0.185 4.185 23 C -0.016 4.016 24 H 0.092 0.908 25 H 0.037 0.963 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.618 6.733 16.905 18.552 hybrid contribution -0.599 -1.199 -1.696 2.162 sum 3.019 5.534 15.209 16.463 Atomic orbital electron populations 1.21462 0.95164 0.99730 1.00652 1.18764 0.94989 0.95905 0.89079 0.94124 1.21211 1.32052 1.12361 0.91288 0.94169 1.25550 0.95057 0.95674 1.01268 1.69948 1.36922 1.23360 1.24414 0.85573 0.78448 0.78617 0.79455 1.20623 1.19825 1.19612 1.21361 0.75011 0.86677 0.83921 1.90511 1.53657 1.18035 1.84929 1.48756 1.69264 1.09214 1.08878 1.22361 0.99309 0.97008 0.83448 1.22565 0.92809 0.92793 1.02271 0.84763 1.24298 0.95413 0.94605 1.05815 1.87912 1.34349 1.18460 1.69211 1.24411 0.91458 1.04425 0.99536 1.21868 0.94335 0.95361 0.95113 1.21894 1.00992 0.97668 0.97970 1.22540 1.00122 0.79924 0.99050 0.90776 0.96256 0.93803 0.92418 0.91941 0.89739 0.85244 0.91383 0.91202 0.85419 0.90583 0.90529 0.90910 0.89196 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.33 8.86 71.98 0.64 -4.69 16 2 C 0.03 1.72 2.27 -12.29 -0.03 1.69 16 3 H 0.04 2.08 6.52 -2.39 -0.02 2.06 16 4 C -0.53 -31.09 8.32 25.60 0.21 -30.88 16 5 H 0.04 2.53 7.10 -2.91 -0.02 2.51 16 6 C 0.02 1.36 5.30 84.65 0.45 1.81 16 7 N -0.91 -50.63 11.39 21.45 0.24 -50.39 16 8 Si 0.95 45.01 29.54 68.60 2.03 47.03 16 9 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 C 0.54 25.46 6.94 87.66 0.61 26.07 16 13 O -0.59 -32.52 16.13 -3.03 -0.05 -32.57 16 14 N -0.63 -21.89 3.33 -813.77 -2.71 -24.60 16 15 C 0.10 2.74 6.48 86.51 0.56 3.30 16 16 C -0.08 -1.63 3.06 -9.99 -0.03 -1.66 16 17 H 0.13 1.75 7.66 -2.39 -0.02 1.74 16 18 C -0.05 -1.15 6.82 72.37 0.49 -0.66 16 19 S -0.33 -7.85 23.26 -56.49 -1.31 -9.17 16 20 C -0.05 -1.13 6.36 72.37 0.46 -0.67 16 21 C -0.06 -1.27 0.87 -51.38 -0.04 -1.31 16 22 C -0.13 -1.65 7.87 71.98 0.57 -1.08 16 23 C 0.11 2.85 5.82 86.55 0.50 3.36 16 24 H 0.07 3.77 6.25 -2.39 -0.01 3.76 16 25 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 28 H 0.06 1.91 7.21 -2.39 -0.02 1.89 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 1.83 7.55 -2.39 -0.02 1.82 16 32 H 0.07 1.94 7.55 -2.39 -0.02 1.92 16 33 H 0.13 2.29 7.81 -2.38 -0.02 2.27 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 2.05 7.77 -2.39 -0.02 2.03 16 38 H 0.07 2.15 5.98 -2.39 -0.01 2.14 16 Total: -1.00 -69.59 310.64 3.63 -65.96 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.04 Total: 8.46 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 4.39 Total: -4.73 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -2.47 Total: -74.98 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.05 Total: -32.57 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.31 Total: -9.17 kcal Total: -69.59 3.63 -65.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537368856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.678 kcal (2) G-P(sol) polarization free energy of solvation -69.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds