Wall clock time and date at job start Mon Mar 30 2020 00:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 119.99584 * 2 1 4 4 O 1.21276 * 120.00404 * 355.04367 * 3 2 1 5 5 C 1.50697 * 119.99788 * 175.04331 * 3 2 1 6 6 C 1.50698 * 115.55316 * 296.29160 * 5 3 2 7 7 O 1.21279 * 120.00370 * 114.04181 * 6 5 3 8 8 N 1.34785 * 119.99602 * 294.04470 * 6 5 3 9 9 C 1.46500 * 119.99821 * 184.82142 * 8 6 5 10 10 C 1.50695 * 109.47064 * 180.02562 * 9 8 6 11 11 O 1.21295 * 120.00019 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00108 * 180.02562 * 10 9 8 13 13 C 1.37105 * 120.00297 * 179.97438 * 12 10 9 14 14 H 1.07998 * 119.99409 * 359.97438 * 13 12 10 15 15 C 1.38939 * 120.00159 * 180.02562 * 13 12 10 16 16 N 1.31417 * 120.00299 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00163 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47483 * 59.99307 * 17 15 13 19 19 H 1.48500 * 109.47392 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47037 * 299.99927 * 17 15 13 21 21 C 1.53002 * 117.50155 * 81.95815 * 5 3 2 22 22 C 1.53007 * 117.50074 * 150.61658 * 5 3 2 23 23 H 1.09004 * 109.46856 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46742 * 299.99130 * 1 2 3 25 25 H 1.08990 * 109.47866 * 59.99632 * 1 2 3 26 26 H 0.96995 * 120.00058 * 180.02562 * 2 1 3 27 27 H 0.96997 * 119.99646 * 4.82344 * 8 6 5 28 28 H 1.09005 * 109.47380 * 299.99833 * 9 8 6 29 29 H 1.08995 * 109.46825 * 59.99877 * 9 8 6 30 30 H 0.97002 * 120.00110 * 359.97438 * 12 10 9 31 31 H 0.97000 * 119.99918 * 180.02562 * 16 15 13 32 32 H 1.09001 * 117.50505 * 215.00559 * 21 5 3 33 33 H 1.09005 * 117.49416 * 0.02562 * 21 5 3 34 34 H 1.09000 * 117.49391 * 359.97438 * 22 5 3 35 35 H 1.08995 * 117.49619 * 144.97239 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5358 2.2156 -0.0907 5 6 3.6416 1.1698 0.1128 6 6 4.1976 0.6218 1.4018 7 8 4.8493 -0.4010 1.3949 8 7 3.9706 1.2685 2.5624 9 6 4.5979 0.7959 3.7991 10 6 4.1850 1.6852 4.9434 11 8 3.4404 2.6220 4.7454 12 7 4.6438 1.4403 6.1867 13 6 4.2686 2.2497 7.2278 14 1 3.6056 3.0838 7.0514 15 6 4.7421 1.9976 8.5094 16 7 5.5493 0.9829 8.7240 17 14 4.2303 3.0999 9.9280 18 1 2.7533 3.0613 10.0771 19 1 4.8666 2.6212 11.1815 20 1 4.6637 4.4935 9.6532 21 6 4.4463 0.9232 -1.1649 22 6 4.3978 2.3236 -0.5489 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8898 26 1 1.9500 -0.8400 -0.0004 27 1 3.3919 2.0468 2.5787 28 1 4.2787 -0.2267 4.0007 29 1 5.6820 0.8233 3.6900 30 1 5.2396 0.6914 6.3451 31 1 5.8795 0.8067 9.6189 32 1 5.3779 0.3647 -1.0732 33 1 3.8888 0.7596 -2.0872 34 1 3.8083 3.0807 -1.0661 35 1 5.2971 2.6867 -0.0515 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556513043.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:32 Heat of formation + Delta-G solvation = -84.772690 kcal Electronic energy + Delta-G solvation = -20227.288404 eV Core-core repulsion = 16840.223788 eV Total energy + Delta-G solvation = -3387.064616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.73380 -39.13450 -38.16796 -36.16445 -34.76525 -34.50508 -33.72553 -31.40659 -28.38508 -27.51839 -25.03717 -23.84589 -22.65046 -21.56654 -19.89620 -19.56630 -18.47321 -17.98101 -16.44021 -16.10613 -15.98447 -15.38711 -15.27523 -15.11603 -14.75754 -14.46510 -14.15540 -13.66181 -13.61925 -13.08653 -12.96098 -12.49616 -12.24142 -12.01249 -11.83955 -11.64715 -11.29175 -11.11595 -10.80793 -10.51536 -10.33591 -10.23880 -9.72388 -9.64488 -9.34161 -8.92373 -8.66356 -8.12224 -6.53247 -3.95388 2.24738 2.52365 2.90339 3.04424 3.12988 3.20985 3.25646 3.64155 3.71343 4.09573 4.43013 4.55024 4.61144 4.73439 4.82597 5.02426 5.14833 5.31053 5.35650 5.46054 5.60117 5.64056 5.80928 5.87399 5.88217 6.02243 6.15454 6.54315 7.21283 7.44479 7.65193 7.89320 7.97222 8.24951 8.43126 9.02766 9.36446 9.84591 10.63519 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028381 B = 0.003878 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.354522 B = 7219.384200 C = 7550.912855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.728 5.728 3 C 0.557 3.443 4 O -0.524 6.524 5 C -0.198 4.198 6 C 0.554 3.446 7 O -0.538 6.538 8 N -0.696 5.696 9 C 0.108 3.892 10 C 0.426 3.574 11 O -0.594 6.594 12 N -0.548 5.548 13 C -0.306 4.306 14 H 0.105 0.895 15 C 0.027 3.973 16 N -0.895 5.895 17 Si 0.934 3.066 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C -0.128 4.128 22 C -0.126 4.126 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.406 0.594 27 H 0.415 0.585 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.396 0.604 31 H 0.275 0.725 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.237 -4.114 -16.789 17.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.380 5.380 3 C 0.342 3.658 4 O -0.399 6.399 5 C -0.204 4.204 6 C 0.338 3.662 7 O -0.416 6.416 8 N -0.349 5.349 9 C -0.020 4.020 10 C 0.211 3.789 11 O -0.480 6.480 12 N -0.183 5.183 13 C -0.435 4.435 14 H 0.123 0.877 15 C -0.176 4.176 16 N -0.535 5.535 17 Si 0.761 3.239 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.165 4.165 22 C -0.164 4.164 23 H 0.096 0.904 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.240 0.760 27 H 0.254 0.746 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.230 0.770 31 H 0.085 0.915 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.632 -3.514 -16.721 17.468 hybrid contribution 0.051 -0.114 1.051 1.058 sum -3.581 -3.628 -15.670 16.478 Atomic orbital electron populations 1.21596 0.79037 1.02494 1.02586 1.45717 1.07941 1.08716 1.75583 1.19100 0.86955 0.83845 0.75927 1.90733 1.69312 1.31415 1.48456 1.21444 0.92668 1.10601 0.95713 1.18939 0.80294 0.83667 0.83325 1.90703 1.40856 1.23443 1.86591 1.45694 1.49689 1.33102 1.06437 1.21018 0.98510 0.98539 0.83890 1.19704 0.86678 0.88211 0.84261 1.90527 1.40765 1.33133 1.83602 1.41779 1.42375 1.28392 1.05725 1.19693 1.27779 1.10253 0.85787 0.87700 1.25319 0.96192 0.97178 0.98929 1.69607 1.32140 1.28200 1.23575 0.85867 0.78938 0.79811 0.79329 1.19760 1.20829 1.19732 1.23084 1.01233 0.99307 0.92909 1.23106 1.01044 0.91524 1.00706 0.90425 0.91860 0.92023 0.75969 0.74645 0.89624 0.89608 0.77043 0.91517 0.86663 0.87550 0.86725 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.71 59.85 0.64 1.42 16 2 N -0.73 -7.82 5.71 -67.08 -0.38 -8.21 16 3 C 0.56 7.56 7.08 -10.99 -0.08 7.48 16 4 O -0.52 -8.72 16.66 5.56 0.09 -8.63 16 5 C -0.20 -2.51 2.28 -156.81 -0.36 -2.87 16 6 C 0.55 8.59 7.06 -10.98 -0.08 8.52 16 7 O -0.54 -9.34 16.72 5.56 0.09 -9.25 16 8 N -0.70 -11.93 5.53 -61.47 -0.34 -12.27 16 9 C 0.11 1.97 6.16 -5.20 -0.03 1.94 16 10 C 0.43 9.82 7.85 -10.99 -0.09 9.74 16 11 O -0.59 -15.54 15.24 5.54 0.08 -15.45 16 12 N -0.55 -13.56 5.29 -10.97 -0.06 -13.61 16 13 C -0.31 -8.32 9.68 -14.93 -0.14 -8.46 16 14 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 15 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 16 N -0.90 -23.77 13.05 55.50 0.72 -23.05 16 17 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 C -0.13 -1.23 9.76 -26.69 -0.26 -1.49 16 22 C -0.13 -1.36 9.76 -26.69 -0.26 -1.62 16 23 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.41 3.66 8.83 -40.82 -0.36 3.30 16 27 H 0.41 7.57 7.44 -40.82 -0.30 7.27 16 28 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.12 1.10 8.00 -51.93 -0.42 0.68 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.11 1.19 7.96 -51.93 -0.41 0.78 16 35 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 317.50 15.07 4.78 4.78 Total: -1.00 -32.79 317.50 -5.06 -37.85 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -4.29 Total: 17.05 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: -0.75 Total: 15.26 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.06 Total: -57.14 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: 0.27 Total: -33.33 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.79 -5.06 -37.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556513043.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.923 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds