Wall clock time and date at job start Mon Mar 30 2020 00:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 119.99584 * 2 1 4 4 O 1.21276 * 120.00404 * 355.04367 * 3 2 1 5 5 C 1.50697 * 119.99788 * 175.04331 * 3 2 1 6 6 C 1.50698 * 115.55316 * 296.29160 * 5 3 2 7 7 O 1.21279 * 120.00370 * 114.04181 * 6 5 3 8 8 N 1.34785 * 119.99602 * 294.04470 * 6 5 3 9 9 C 1.46500 * 119.99821 * 184.82142 * 8 6 5 10 10 C 1.50695 * 109.47064 * 180.02562 * 9 8 6 11 11 O 1.21295 * 120.00019 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00108 * 180.02562 * 10 9 8 13 13 C 1.37105 * 120.00297 * 179.97438 * 12 10 9 14 14 H 1.07998 * 119.99409 * 359.97438 * 13 12 10 15 15 C 1.38939 * 120.00159 * 180.02562 * 13 12 10 16 16 N 1.31417 * 120.00299 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00163 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47483 * 59.99307 * 17 15 13 19 19 H 1.48500 * 109.47392 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47037 * 299.99927 * 17 15 13 21 21 C 1.53002 * 117.50155 * 81.95815 * 5 3 2 22 22 C 1.53007 * 117.50074 * 150.61658 * 5 3 2 23 23 H 1.09004 * 109.46856 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46742 * 299.99130 * 1 2 3 25 25 H 1.08990 * 109.47866 * 59.99632 * 1 2 3 26 26 H 0.96995 * 120.00058 * 180.02562 * 2 1 3 27 27 H 0.96997 * 119.99646 * 4.82344 * 8 6 5 28 28 H 1.09005 * 109.47380 * 299.99833 * 9 8 6 29 29 H 1.08995 * 109.46825 * 59.99877 * 9 8 6 30 30 H 0.97002 * 120.00110 * 359.97438 * 12 10 9 31 31 H 0.97000 * 119.99918 * 180.02562 * 16 15 13 32 32 H 1.09001 * 117.50505 * 215.00559 * 21 5 3 33 33 H 1.09005 * 117.49416 * 0.02562 * 21 5 3 34 34 H 1.09000 * 117.49391 * 359.97438 * 22 5 3 35 35 H 1.08995 * 117.49619 * 144.97239 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5358 2.2156 -0.0907 5 6 3.6416 1.1698 0.1128 6 6 4.1976 0.6218 1.4018 7 8 4.8493 -0.4010 1.3949 8 7 3.9706 1.2685 2.5624 9 6 4.5979 0.7959 3.7991 10 6 4.1850 1.6852 4.9434 11 8 3.4404 2.6220 4.7454 12 7 4.6438 1.4403 6.1867 13 6 4.2686 2.2497 7.2278 14 1 3.6056 3.0838 7.0514 15 6 4.7421 1.9976 8.5094 16 7 5.5493 0.9829 8.7240 17 14 4.2303 3.0999 9.9280 18 1 2.7533 3.0613 10.0771 19 1 4.8666 2.6212 11.1815 20 1 4.6637 4.4935 9.6532 21 6 4.4463 0.9232 -1.1649 22 6 4.3978 2.3236 -0.5489 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8898 26 1 1.9500 -0.8400 -0.0004 27 1 3.3919 2.0468 2.5787 28 1 4.2787 -0.2267 4.0007 29 1 5.6820 0.8233 3.6900 30 1 5.2396 0.6914 6.3451 31 1 5.8795 0.8067 9.6189 32 1 5.3779 0.3647 -1.0732 33 1 3.8888 0.7596 -2.0872 34 1 3.8083 3.0807 -1.0661 35 1 5.2971 2.6867 -0.0515 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556513043.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:32 Heat of formation + Delta-G solvation = -111.765099 kcal Electronic energy + Delta-G solvation = -20228.458883 eV Core-core repulsion = 16840.223788 eV Total energy + Delta-G solvation = -3388.235095 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.84370 -40.54553 -39.79466 -37.14881 -36.28543 -35.72129 -35.36738 -33.40315 -29.80448 -28.52412 -26.74418 -25.08176 -23.45254 -22.71140 -21.42987 -20.92483 -20.12077 -19.51531 -17.69269 -17.38283 -17.17394 -16.88750 -16.63037 -16.57361 -16.09150 -15.82308 -15.62247 -15.15761 -15.00811 -14.24497 -13.94827 -13.88141 -13.61816 -13.55979 -13.17435 -12.92122 -12.63188 -12.49182 -12.24703 -12.14350 -11.73431 -11.58983 -11.30419 -10.90225 -10.60556 -10.31609 -10.25569 -10.11335 -8.52953 -6.03391 1.14652 1.36140 1.38656 1.42047 1.52480 1.82649 1.87925 2.04594 2.28426 2.68462 3.05974 3.14002 3.49334 3.56253 3.67492 3.78227 4.18174 4.35306 4.37642 4.38990 4.56681 4.58735 4.65754 4.84990 4.89076 5.09922 5.12665 5.28784 5.36292 5.89079 6.27335 6.35346 6.46343 6.92440 7.01696 7.03180 7.40897 7.92297 8.63571 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028381 B = 0.003878 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.354522 B = 7219.384200 C = 7550.912855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.718 5.718 3 C 0.554 3.446 4 O -0.563 6.563 5 C -0.216 4.216 6 C 0.561 3.439 7 O -0.554 6.554 8 N -0.703 5.703 9 C 0.121 3.879 10 C 0.429 3.571 11 O -0.627 6.627 12 N -0.556 5.556 13 C -0.340 4.340 14 H 0.084 0.916 15 C -0.007 4.007 16 N -0.914 5.914 17 Si 0.996 3.004 18 H -0.271 1.271 19 H -0.270 1.270 20 H -0.270 1.270 21 C -0.100 4.100 22 C -0.126 4.126 23 H 0.112 0.888 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.416 0.584 27 H 0.410 0.590 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.400 0.600 31 H 0.281 0.719 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.006 -4.913 -17.532 18.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.369 5.369 3 C 0.339 3.661 4 O -0.441 6.441 5 C -0.223 4.223 6 C 0.346 3.654 7 O -0.433 6.433 8 N -0.356 5.356 9 C -0.006 4.006 10 C 0.216 3.784 11 O -0.515 6.515 12 N -0.192 5.192 13 C -0.469 4.469 14 H 0.102 0.898 15 C -0.208 4.208 16 N -0.554 5.554 17 Si 0.819 3.181 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.195 1.195 21 C -0.137 4.137 22 C -0.164 4.164 23 H 0.131 0.869 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.252 0.748 27 H 0.247 0.753 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.234 0.766 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.135 0.865 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.384 -4.374 -17.483 18.337 hybrid contribution -0.032 0.090 1.224 1.228 sum -3.416 -4.285 -16.259 17.158 Atomic orbital electron populations 1.21762 0.77950 1.04592 1.01802 1.45752 1.08769 1.08405 1.74007 1.19268 0.87280 0.83971 0.75563 1.90712 1.70037 1.32793 1.50577 1.21377 0.92485 1.12949 0.95452 1.19274 0.79563 0.83036 0.83495 1.90692 1.41643 1.24082 1.86888 1.45769 1.49917 1.33229 1.06640 1.20869 0.99456 0.97739 0.82584 1.20454 0.85243 0.87918 0.84800 1.90504 1.41985 1.34743 1.84277 1.41813 1.42863 1.28465 1.06020 1.19686 1.29005 1.10916 0.87312 0.89816 1.26092 0.95745 0.98307 1.00663 1.69665 1.32321 1.28953 1.24441 0.84950 0.78571 0.78025 0.76579 1.19615 1.19400 1.19545 1.23243 1.00677 0.97837 0.91985 1.23210 1.00699 0.92025 1.00424 0.86918 0.93609 0.91849 0.74823 0.75297 0.88251 0.87938 0.76563 0.90968 0.86119 0.85214 0.86452 0.86824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.71 127.77 1.37 2.73 16 2 N -0.72 -14.39 5.71 -484.53 -2.77 -17.16 16 3 C 0.55 14.54 7.08 87.66 0.62 15.16 16 4 O -0.56 -18.71 16.66 -3.02 -0.05 -18.76 16 5 C -0.22 -5.19 2.28 -53.67 -0.12 -5.31 16 6 C 0.56 16.70 7.06 87.66 0.62 17.32 16 7 O -0.55 -18.26 16.72 -3.03 -0.05 -18.31 16 8 N -0.70 -23.73 5.53 -466.79 -2.58 -26.31 16 9 C 0.12 4.33 6.16 85.63 0.53 4.86 16 10 C 0.43 19.96 7.85 87.66 0.69 20.65 16 11 O -0.63 -33.49 15.24 -3.08 -0.05 -33.54 16 12 N -0.56 -27.87 5.29 -306.99 -1.62 -29.49 16 13 C -0.34 -18.80 9.68 84.04 0.81 -17.99 16 14 H 0.08 4.91 7.16 -2.91 -0.02 4.88 16 15 C -0.01 -0.37 5.50 84.92 0.47 0.10 16 16 N -0.91 -48.13 13.05 21.66 0.28 -47.85 16 17 Si 1.00 41.76 29.55 68.60 2.03 43.79 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 C -0.10 -1.66 9.76 30.62 0.30 -1.36 16 22 C -0.13 -2.51 9.76 30.62 0.30 -2.21 16 23 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.42 6.65 8.83 -92.71 -0.82 5.83 16 27 H 0.41 15.06 7.44 -92.71 -0.69 14.37 16 28 H 0.10 3.32 8.14 -2.38 -0.02 3.31 16 29 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 30 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 31 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 32 H 0.12 1.94 8.00 -2.39 -0.02 1.92 16 33 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.12 2.30 7.96 -2.39 -0.02 2.28 16 35 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -70.38 317.50 -0.31 -70.69 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -1.09 Total: 42.99 kcal Atomic # 6 Polarization: 28.36 SS G_CDS: 5.58 Total: 33.94 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -6.69 Total: -120.81 kcal Atomic # 8 Polarization: -70.46 SS G_CDS: -0.15 Total: -70.61 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -70.38 -0.31 -70.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556513043.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.071 kcal (2) G-P(sol) polarization free energy of solvation -70.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds