Wall clock time and date at job start Mon Mar 30 2020 01:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46980 * 2 1 4 4 N 1.31791 * 119.08014 * 89.99860 * 3 2 1 5 5 C 1.32554 * 121.01003 * 180.02562 * 4 3 2 6 6 C 1.38133 * 119.19434 * 359.97438 * 5 4 3 7 7 C 1.39617 * 118.33308 * 0.02562 * 6 5 4 8 8 N 1.38651 * 120.53018 * 179.97438 * 7 6 5 9 9 C 1.39794 * 120.00042 * 7.86816 * 8 7 6 10 10 C 1.39335 * 119.94828 * 218.84778 * 9 8 7 11 11 C 1.38479 * 120.42384 * 179.70317 * 10 9 8 12 12 C 1.37688 * 120.32144 * 0.24702 * 11 10 9 13 13 C 1.40751 * 119.89796 * 0.02920 * 12 11 10 14 14 C 1.41406 * 120.20996 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99708 * 35.44061 * 14 13 12 16 16 C 1.39922 * 119.99967 * 215.43131 * 14 13 12 17 17 N 1.30831 * 120.00224 * 7.35721 * 16 14 13 18 18 Si 1.86807 * 120.00250 * 187.34843 * 16 14 13 19 19 H 1.48498 * 109.46922 * 60.00355 * 18 16 14 20 20 H 1.48491 * 109.47329 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46806 * 300.00656 * 18 16 14 22 22 C 1.38278 * 119.95246 * 39.10058 * 9 8 7 23 23 N 1.31735 * 119.08248 * 270.27523 * 3 2 1 24 24 H 1.09000 * 109.47247 * 59.99964 * 1 2 3 25 25 H 1.08999 * 109.46953 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47308 * 299.99661 * 1 2 3 27 27 H 1.08997 * 109.47269 * 239.99981 * 2 1 3 28 28 H 1.09000 * 109.47247 * 120.00036 * 2 1 3 29 29 H 1.07997 * 120.40191 * 180.02562 * 5 4 3 30 30 H 1.08005 * 120.83346 * 179.97438 * 6 5 4 31 31 H 0.97000 * 119.99816 * 187.86942 * 8 7 6 32 32 H 1.07997 * 119.78988 * 359.97209 * 10 9 8 33 33 H 1.07997 * 119.83864 * 180.27240 * 11 10 9 34 34 H 1.08001 * 120.05108 * 180.02562 * 12 11 10 35 35 H 0.96998 * 120.00757 * 179.97438 * 17 16 14 36 36 H 1.07992 * 120.15936 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2458 2.0248 1.1518 5 6 2.6869 3.2740 1.1964 6 6 2.9249 3.9471 0.0139 7 6 2.6885 3.2782 -1.1885 8 7 2.9115 3.9107 -2.4020 9 6 3.5298 5.1640 -2.4338 10 6 3.0949 6.1315 -3.3372 11 6 3.6963 7.3784 -3.3729 12 6 4.7348 7.6740 -2.5186 13 6 5.1889 6.7048 -1.6045 14 6 6.2553 7.0011 -0.7245 15 1 6.3584 7.9958 -0.3166 16 6 7.1769 6.0055 -0.3819 17 7 7.1393 4.8443 -0.9834 18 14 8.4612 6.3344 0.9342 19 1 7.7848 6.6537 2.2170 20 1 9.3109 5.1292 1.1087 21 1 9.3090 7.4820 0.5225 22 6 4.5756 5.4400 -1.5722 23 7 2.2406 2.0264 -1.1512 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.8589 3.7593 2.1458 30 1 3.2841 4.9657 0.0194 31 1 2.6385 3.4835 -3.2290 32 1 2.2808 5.9091 -4.0110 33 1 3.3487 8.1228 -4.0740 34 1 5.2004 8.6480 -2.5499 35 1 7.7784 4.1542 -0.7463 36 1 4.9164 4.6893 -0.8746 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559192498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:48 Heat of formation + Delta-G solvation = 63.308760 kcal Electronic energy + Delta-G solvation = -19637.044919 eV Core-core repulsion = 16699.543611 eV Total energy + Delta-G solvation = -2937.501308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.63255 -38.25221 -35.63776 -33.89191 -33.55977 -32.21580 -30.13496 -29.39124 -28.18997 -25.45556 -24.63105 -23.46246 -21.77288 -21.08794 -20.16705 -18.01538 -17.27395 -16.69480 -15.55105 -15.24018 -14.93073 -14.73290 -14.41273 -14.11475 -13.84662 -13.60036 -13.12242 -12.91379 -12.66064 -12.18369 -12.02482 -11.60861 -11.42999 -11.18615 -11.07391 -10.99174 -10.72294 -10.56298 -10.35622 -9.85725 -9.80017 -9.53264 -9.28151 -8.81259 -8.36474 -7.47245 -6.88903 -6.75900 -4.53090 1.49436 1.70092 2.67943 2.79802 3.04786 3.06549 3.11329 3.48071 3.89833 4.27529 4.37646 4.55085 4.76003 5.21077 5.30637 5.37600 5.43654 5.45137 5.79497 5.88551 5.96667 6.03082 6.13315 6.19708 6.24015 6.25708 6.54969 6.66690 6.85633 6.92936 7.08153 7.14367 7.35482 7.55940 7.66565 7.79792 7.91789 8.04122 8.22809 8.48796 8.71655 8.76453 8.80313 10.18275 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.006050 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.709140 B = 4626.938714 C = 5815.629699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C 0.347 3.653 4 N -0.566 5.566 5 C 0.163 3.837 6 C -0.275 4.275 7 C 0.440 3.560 8 N -0.643 5.643 9 C 0.151 3.849 10 C -0.250 4.250 11 C -0.080 4.080 12 C -0.220 4.220 13 C 0.127 3.873 14 C -0.469 4.469 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.804 5.804 18 Si 0.910 3.090 19 H -0.263 1.263 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.174 4.174 23 N -0.581 5.581 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.162 0.838 30 H 0.161 0.839 31 H 0.406 0.594 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.281 0.719 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.050 -4.811 1.776 8.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C 0.077 3.923 4 N -0.285 5.285 5 C 0.003 3.997 6 C -0.302 4.302 7 C 0.197 3.803 8 N -0.266 5.266 9 C 0.058 3.942 10 C -0.271 4.271 11 C -0.099 4.099 12 C -0.240 4.240 13 C 0.124 3.876 14 C -0.500 4.500 15 H 0.098 0.902 16 C -0.141 4.141 17 N -0.430 5.430 18 Si 0.735 3.265 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.196 4.196 23 N -0.305 5.305 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.179 0.821 30 H 0.178 0.822 31 H 0.242 0.758 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.164 -5.791 1.803 9.387 hybrid contribution 1.028 0.858 0.017 1.339 sum -6.137 -4.933 1.820 8.081 Atomic orbital electron populations 1.21660 0.94039 1.01878 1.02321 1.20252 0.96372 0.88746 1.03624 1.22686 0.90395 0.96302 0.82923 1.68158 1.19316 1.11334 1.29701 1.22831 0.89493 0.89390 0.98012 1.22777 1.10053 1.04857 0.92548 1.18496 0.87194 0.87644 0.86988 1.41900 1.61364 1.18377 1.05008 1.17585 0.93841 0.83102 0.99675 1.20149 1.05863 0.94509 1.06594 1.20389 0.96313 0.94969 0.98253 1.21183 1.02094 1.00651 1.00108 1.17434 0.90198 0.90286 0.89687 1.19482 1.08338 0.97527 1.24616 0.90238 1.25852 0.98456 0.94241 0.95599 1.69750 1.33367 1.04356 1.35509 0.86331 0.80166 0.78729 0.81319 1.18789 1.20385 1.19000 1.21328 0.94785 1.00260 1.03233 1.67653 1.22468 1.08941 1.31461 0.92487 0.91922 0.92411 0.89715 0.89522 0.82085 0.82152 0.75816 0.88837 0.88612 0.88444 0.90853 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.89 37.16 0.37 -1.19 16 2 C -0.05 -0.66 6.37 -27.88 -0.18 -0.83 16 3 C 0.35 5.98 6.90 -157.25 -1.08 4.90 16 4 N -0.57 -10.01 10.33 -10.81 -0.11 -10.12 16 5 C 0.16 2.85 11.29 -17.28 -0.20 2.66 16 6 C -0.28 -5.39 8.03 -39.11 -0.31 -5.71 16 7 C 0.44 8.79 7.47 -154.66 -1.16 7.63 16 8 N -0.64 -12.68 5.47 -9.88 -0.05 -12.73 16 9 C 0.15 3.31 5.97 -83.80 -0.50 2.81 16 10 C -0.25 -5.17 9.97 -39.08 -0.39 -5.56 16 11 C -0.08 -1.67 10.02 -39.69 -0.40 -2.07 16 12 C -0.22 -5.04 9.79 -38.83 -0.38 -5.42 16 13 C 0.13 3.18 5.47 -106.85 -0.58 2.59 16 14 C -0.47 -11.83 9.03 -37.75 -0.34 -12.18 16 15 H 0.08 1.91 7.86 -52.49 -0.41 1.50 16 16 C 0.08 1.84 5.28 -17.35 -0.09 1.75 16 17 N -0.80 -20.61 11.14 55.55 0.62 -20.00 16 18 Si 0.91 18.39 29.57 -169.99 -5.03 13.37 16 19 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 C -0.17 -4.23 5.92 -38.68 -0.23 -4.46 16 23 N -0.58 -10.92 10.37 -9.94 -0.10 -11.03 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.16 2.30 8.06 -52.49 -0.42 1.88 16 30 H 0.16 3.34 5.35 -52.48 -0.28 3.06 16 31 H 0.41 7.14 8.95 -40.82 -0.37 6.77 16 32 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 35 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 36 H 0.13 3.27 4.96 -52.49 -0.26 3.01 16 LS Contribution 307.94 15.07 4.64 4.64 Total: -1.00 -27.42 307.94 -9.77 -37.19 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -4.26 Total: 13.75 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -5.47 Total: -15.08 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.35 Total: -53.88 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.42 -9.77 -37.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559192498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.497 kcal (2) G-P(sol) polarization free energy of solvation -27.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds