Wall clock time and date at job start Mon Mar 30 2020 01:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46980 * 2 1 4 4 N 1.31791 * 119.08014 * 89.99860 * 3 2 1 5 5 C 1.32554 * 121.01003 * 180.02562 * 4 3 2 6 6 C 1.38133 * 119.19434 * 359.97438 * 5 4 3 7 7 C 1.39617 * 118.33308 * 0.02562 * 6 5 4 8 8 N 1.38651 * 120.53018 * 179.97438 * 7 6 5 9 9 C 1.39794 * 120.00042 * 7.86816 * 8 7 6 10 10 C 1.39335 * 119.94828 * 218.84778 * 9 8 7 11 11 C 1.38479 * 120.42384 * 179.70317 * 10 9 8 12 12 C 1.37688 * 120.32144 * 0.24702 * 11 10 9 13 13 C 1.40751 * 119.89796 * 0.02920 * 12 11 10 14 14 C 1.41406 * 120.20996 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99708 * 35.44061 * 14 13 12 16 16 C 1.39922 * 119.99967 * 215.43131 * 14 13 12 17 17 N 1.30831 * 120.00224 * 7.35721 * 16 14 13 18 18 Si 1.86807 * 120.00250 * 187.34843 * 16 14 13 19 19 H 1.48498 * 109.46922 * 60.00355 * 18 16 14 20 20 H 1.48491 * 109.47329 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46806 * 300.00656 * 18 16 14 22 22 C 1.38278 * 119.95246 * 39.10058 * 9 8 7 23 23 N 1.31735 * 119.08248 * 270.27523 * 3 2 1 24 24 H 1.09000 * 109.47247 * 59.99964 * 1 2 3 25 25 H 1.08999 * 109.46953 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47308 * 299.99661 * 1 2 3 27 27 H 1.08997 * 109.47269 * 239.99981 * 2 1 3 28 28 H 1.09000 * 109.47247 * 120.00036 * 2 1 3 29 29 H 1.07997 * 120.40191 * 180.02562 * 5 4 3 30 30 H 1.08005 * 120.83346 * 179.97438 * 6 5 4 31 31 H 0.97000 * 119.99816 * 187.86942 * 8 7 6 32 32 H 1.07997 * 119.78988 * 359.97209 * 10 9 8 33 33 H 1.07997 * 119.83864 * 180.27240 * 11 10 9 34 34 H 1.08001 * 120.05108 * 180.02562 * 12 11 10 35 35 H 0.96998 * 120.00757 * 179.97438 * 17 16 14 36 36 H 1.07992 * 120.15936 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2458 2.0248 1.1518 5 6 2.6869 3.2740 1.1964 6 6 2.9249 3.9471 0.0139 7 6 2.6885 3.2782 -1.1885 8 7 2.9115 3.9107 -2.4020 9 6 3.5298 5.1640 -2.4338 10 6 3.0949 6.1315 -3.3372 11 6 3.6963 7.3784 -3.3729 12 6 4.7348 7.6740 -2.5186 13 6 5.1889 6.7048 -1.6045 14 6 6.2553 7.0011 -0.7245 15 1 6.3584 7.9958 -0.3166 16 6 7.1769 6.0055 -0.3819 17 7 7.1393 4.8443 -0.9834 18 14 8.4612 6.3344 0.9342 19 1 7.7848 6.6537 2.2170 20 1 9.3109 5.1292 1.1087 21 1 9.3090 7.4820 0.5225 22 6 4.5756 5.4400 -1.5722 23 7 2.2406 2.0264 -1.1512 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.8589 3.7593 2.1458 30 1 3.2841 4.9657 0.0194 31 1 2.6385 3.4835 -3.2290 32 1 2.2808 5.9091 -4.0110 33 1 3.3487 8.1228 -4.0740 34 1 5.2004 8.6480 -2.5499 35 1 7.7784 4.1542 -0.7463 36 1 4.9164 4.6893 -0.8746 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559192498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:47 Heat of formation + Delta-G solvation = 49.586333 kcal Electronic energy + Delta-G solvation = -19637.639968 eV Core-core repulsion = 16699.543611 eV Total energy + Delta-G solvation = -2938.096357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.07942 -39.91539 -37.22772 -35.42456 -35.00802 -33.66462 -31.74438 -30.90068 -29.87291 -27.24648 -25.85313 -24.95391 -23.13771 -22.82069 -21.73637 -19.65501 -18.85178 -18.21204 -17.26167 -16.85531 -16.47227 -16.22591 -15.94046 -15.49531 -15.22068 -14.89025 -14.61409 -14.42127 -14.26819 -13.71508 -13.40564 -13.04828 -12.82502 -12.76073 -12.57364 -12.35525 -12.21634 -11.97075 -11.89730 -11.53320 -11.47179 -11.14767 -10.92252 -10.26402 -9.96146 -9.26330 -8.61960 -8.48974 -6.42347 0.06297 0.19154 0.96319 1.06971 1.38584 1.49120 1.49872 1.96296 2.21359 2.72766 2.88645 3.12798 3.40941 3.63248 3.77122 4.25707 4.30567 4.41721 4.43081 4.47123 4.59577 4.64177 4.82551 4.87845 5.02090 5.05206 5.12360 5.15753 5.19256 5.31988 5.32642 5.55191 5.78364 5.83303 5.93435 6.07239 6.21504 6.36355 6.53634 6.77957 6.94285 6.96055 7.26973 8.38345 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.006050 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.709140 B = 4626.938714 C = 5815.629699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.051 4.051 3 C 0.339 3.661 4 N -0.569 5.569 5 C 0.169 3.831 6 C -0.296 4.296 7 C 0.425 3.575 8 N -0.642 5.642 9 C 0.151 3.849 10 C -0.243 4.243 11 C -0.077 4.077 12 C -0.235 4.235 13 C 0.096 3.904 14 C -0.502 4.502 15 H 0.080 0.920 16 C 0.036 3.964 17 N -0.841 5.841 18 Si 0.976 3.024 19 H -0.257 1.257 20 H -0.276 1.276 21 H -0.259 1.259 22 C -0.188 4.188 23 N -0.587 5.587 24 H 0.046 0.954 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.191 0.809 30 H 0.143 0.857 31 H 0.415 0.585 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.281 0.719 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.026 -5.424 1.874 9.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.090 4.090 3 C 0.070 3.930 4 N -0.288 5.288 5 C 0.008 3.992 6 C -0.323 4.323 7 C 0.182 3.818 8 N -0.266 5.266 9 C 0.057 3.943 10 C -0.264 4.264 11 C -0.096 4.096 12 C -0.255 4.255 13 C 0.093 3.907 14 C -0.532 4.532 15 H 0.098 0.902 16 C -0.176 4.176 17 N -0.469 5.469 18 Si 0.798 3.202 19 H -0.181 1.181 20 H -0.201 1.201 21 H -0.183 1.183 22 C -0.210 4.210 23 N -0.311 5.311 24 H 0.065 0.935 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.207 0.793 30 H 0.160 0.840 31 H 0.253 0.747 32 H 0.142 0.858 33 H 0.151 0.849 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.167 -6.414 1.889 10.555 hybrid contribution 1.184 1.005 -0.067 1.554 sum -6.984 -5.409 1.822 9.019 Atomic orbital electron populations 1.21626 0.92384 1.03653 1.01502 1.20464 0.97622 0.86067 1.04807 1.23647 0.89134 0.97843 0.82395 1.68300 1.19433 1.11188 1.29867 1.23303 0.87999 0.89351 0.98544 1.22718 1.11628 1.04465 0.93510 1.18698 0.87676 0.88299 0.87090 1.41777 1.61403 1.17901 1.05535 1.17683 0.93216 0.84191 0.99241 1.20553 1.05908 0.93983 1.05997 1.20780 0.95119 0.95761 0.97891 1.21399 1.03049 1.00676 1.00383 1.17777 0.90844 0.91326 0.90711 1.19735 1.09415 0.98023 1.26043 0.90229 1.26622 1.00108 0.93722 0.97195 1.69848 1.34511 1.05301 1.37194 0.85324 0.77594 0.78631 0.78671 1.18130 1.20076 1.18326 1.21173 0.95950 0.99811 1.04028 1.67757 1.22777 1.08352 1.32253 0.93496 0.88869 0.92989 0.88793 0.88037 0.79252 0.83951 0.74736 0.85834 0.84886 0.87668 0.90846 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.89 71.98 0.71 -1.91 16 2 C -0.05 -1.20 6.37 29.85 0.19 -1.01 16 3 C 0.34 11.30 6.90 138.77 0.96 12.26 16 4 N -0.57 -19.51 10.33 -188.10 -1.94 -21.46 16 5 C 0.17 5.86 11.29 84.56 0.95 6.81 16 6 C -0.30 -11.83 8.03 22.58 0.18 -11.65 16 7 C 0.43 17.08 7.47 133.12 1.00 18.07 16 8 N -0.64 -25.26 5.47 -185.16 -1.01 -26.28 16 9 C 0.15 6.61 5.97 38.14 0.23 6.84 16 10 C -0.24 -9.66 9.97 22.59 0.23 -9.44 16 11 C -0.08 -3.06 10.02 22.20 0.22 -2.83 16 12 C -0.24 -10.76 9.79 22.75 0.22 -10.53 16 13 C 0.10 4.95 5.47 -21.31 -0.12 4.83 16 14 C -0.50 -26.12 9.03 23.46 0.21 -25.91 16 15 H 0.08 3.96 7.86 -2.91 -0.02 3.94 16 16 C 0.04 1.82 5.28 85.25 0.45 2.27 16 17 N -0.84 -44.65 11.14 21.82 0.24 -44.40 16 18 Si 0.98 38.31 29.57 68.60 2.03 40.34 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.28 -10.56 7.11 99.48 0.71 -9.86 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 22 C -0.19 -9.39 5.92 22.86 0.14 -9.25 16 23 N -0.59 -21.77 10.37 -185.36 -1.92 -23.69 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.19 5.25 8.06 -2.91 -0.02 5.22 16 30 H 0.14 6.22 5.35 -2.91 -0.02 6.20 16 31 H 0.41 14.34 8.95 -92.71 -0.83 13.52 16 32 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 33 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 34 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 36 H 0.11 5.75 4.96 -2.91 -0.01 5.73 16 Total: -1.00 -60.04 307.94 3.24 -56.80 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: 0.28 Total: 40.14 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 5.57 Total: -21.45 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -4.64 Total: -115.83 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -60.04 3.24 -56.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559192498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.385 kcal (2) G-P(sol) polarization free energy of solvation -60.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds