Wall clock time and date at job start Mon Mar 30 2020 01:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38119 * 120.39889 * 2 1 4 4 C 1.39632 * 118.32946 * 180.02562 * 3 2 1 5 5 N 1.38540 * 120.52802 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00019 * 359.73195 * 5 4 3 7 7 C 1.50706 * 109.47002 * 180.27184 * 6 5 4 8 8 C 1.38629 * 119.74771 * 269.72482 * 7 6 5 9 9 C 1.37619 * 120.24423 * 179.72319 * 8 7 6 10 10 C 1.40712 * 119.74663 * 0.56783 * 9 8 7 11 11 C 1.41398 * 120.24523 * 179.68524 * 10 9 8 12 12 H 1.08001 * 120.00474 * 155.31179 * 11 10 9 13 13 C 1.39951 * 119.99781 * 335.30823 * 11 10 9 14 14 N 1.30827 * 119.99982 * 342.23833 * 13 11 10 15 15 Si 1.86805 * 119.99704 * 162.23235 * 13 11 10 16 16 H 1.48495 * 109.46888 * 94.66841 * 15 13 11 17 17 H 1.48499 * 109.46888 * 214.66538 * 15 13 11 18 18 H 1.48497 * 109.47388 * 334.66810 * 15 13 11 19 19 C 1.40709 * 119.51309 * 359.70648 * 10 9 8 20 20 C 1.37624 * 119.74490 * 359.97438 * 19 10 9 21 21 N 1.32985 * 118.93586 * 0.25264 * 4 3 2 22 22 C 1.31747 * 120.69183 * 359.48835 * 21 4 3 23 23 N 1.31796 * 121.82902 * 0.52717 * 22 21 4 24 24 H 1.09005 * 109.47248 * 89.99695 * 1 2 3 25 25 H 1.08999 * 109.47201 * 210.00128 * 1 2 3 26 26 H 1.09007 * 109.47151 * 330.00288 * 1 2 3 27 27 H 1.07995 * 120.83531 * 0.04556 * 3 2 1 28 28 H 0.97001 * 120.00007 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.46977 * 300.26581 * 6 5 4 30 30 H 1.08994 * 109.47422 * 60.26966 * 6 5 4 31 31 H 1.07999 * 119.87716 * 359.97438 * 8 7 6 32 32 H 1.08006 * 120.12461 * 180.27549 * 9 8 7 33 33 H 0.97002 * 119.99791 * 179.97438 * 14 13 11 34 34 H 1.07999 * 120.13208 * 179.97438 * 19 10 9 35 35 H 1.07998 * 119.87826 * 179.97438 * 20 19 10 36 36 H 1.07999 * 119.09064 * 180.26414 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6013 1.1409 -0.0005 5 7 4.3477 2.3081 -0.0011 6 6 3.6734 3.6087 -0.0071 7 6 4.7037 4.7085 -0.0132 8 6 5.1705 5.2204 1.1876 9 6 6.1155 6.2209 1.1940 10 6 6.5989 6.7325 -0.0244 11 6 7.5649 7.7650 -0.0302 12 1 8.2186 7.8883 -0.8810 13 6 7.6738 8.6274 1.0667 14 7 6.6927 8.7182 1.9273 15 14 9.2203 9.6485 1.3019 16 1 9.0206 10.9937 0.7058 17 1 9.5059 9.7873 2.7525 18 1 10.3638 8.9761 0.6344 19 6 6.1136 6.2092 -1.2372 20 6 5.1736 5.2042 -1.2196 21 7 4.2023 -0.0454 -0.0062 22 6 3.4956 -1.1573 -0.0011 23 7 2.1777 -1.1432 -0.0006 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8901 0.5138 27 1 1.6862 2.1380 0.0007 28 1 5.3167 2.2641 -0.0011 29 1 3.0495 3.6904 -0.8971 30 1 3.0506 3.6992 0.8828 31 1 4.7943 4.8298 2.1215 32 1 6.4811 6.6152 2.1307 33 1 6.7684 9.3156 2.6878 34 1 6.4775 6.5947 -2.1781 35 1 4.7993 4.8014 -2.1491 36 1 4.0104 -2.1067 -0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559221937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:38 Heat of formation + Delta-G solvation = 41.810844 kcal Electronic energy + Delta-G solvation = -18726.921213 eV Core-core repulsion = 15788.487686 eV Total energy + Delta-G solvation = -2938.433528 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79665 -39.68028 -37.44532 -35.65449 -34.83184 -32.86972 -31.40299 -31.12272 -29.08001 -28.36030 -25.86185 -24.36266 -22.94696 -22.86861 -21.81939 -19.27137 -19.06292 -17.88615 -17.23698 -16.43368 -16.22910 -16.18096 -15.74749 -15.58614 -15.48731 -15.13799 -14.33091 -14.27015 -13.86064 -13.83625 -13.64371 -13.38574 -13.07417 -12.94319 -12.77609 -12.46431 -12.17663 -11.86998 -11.61437 -11.48637 -11.31235 -11.04863 -10.61960 -10.14032 -9.43169 -9.32657 -9.05275 -8.70056 -6.40125 0.17427 0.46166 0.80090 1.10987 1.36852 1.43591 1.51831 2.16747 2.21248 2.73661 2.98831 3.34675 3.51979 3.69186 3.89859 4.09562 4.28253 4.31744 4.46733 4.50580 4.62413 4.66320 4.70880 4.80874 4.96706 5.01492 5.11753 5.13168 5.32205 5.40013 5.47372 5.65337 5.82774 5.88121 6.05732 6.15792 6.33444 6.38859 6.62048 6.65610 6.88831 6.97519 7.39093 8.26682 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.046085 B = 0.003160 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.429598 B = 8857.422167 C = 8962.415852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.191 3.809 3 C -0.304 4.304 4 C 0.423 3.577 5 N -0.701 5.701 6 C 0.198 3.802 7 C -0.231 4.231 8 C -0.081 4.081 9 C -0.194 4.194 10 C 0.087 3.913 11 C -0.498 4.498 12 H 0.076 0.924 13 C 0.036 3.964 14 N -0.819 5.819 15 Si 0.980 3.020 16 H -0.261 1.261 17 H -0.266 1.266 18 H -0.260 1.260 19 C -0.246 4.246 20 C -0.067 4.067 21 N -0.613 5.613 22 C 0.331 3.669 23 N -0.586 5.586 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.155 0.845 28 H 0.403 0.597 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.290 0.710 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.577 -10.699 -1.424 13.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.049 3.951 3 C -0.332 4.332 4 C 0.179 3.821 5 N -0.330 5.330 6 C 0.076 3.924 7 C -0.232 4.232 8 C -0.100 4.100 9 C -0.213 4.213 10 C 0.084 3.916 11 C -0.527 4.527 12 H 0.094 0.906 13 C -0.179 4.179 14 N -0.444 5.444 15 Si 0.801 3.199 16 H -0.186 1.186 17 H -0.190 1.190 18 H -0.184 1.184 19 C -0.266 4.266 20 C -0.085 4.085 21 N -0.339 5.339 22 C 0.042 3.958 23 N -0.307 5.307 24 H 0.114 0.886 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.173 0.827 28 H 0.238 0.762 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.135 0.865 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -8.348 -11.176 -1.217 14.002 hybrid contribution 0.975 1.544 0.212 1.838 sum -7.373 -9.632 -1.005 12.172 Atomic orbital electron populations 1.20836 0.85737 1.04727 1.04478 1.21958 0.98823 0.87353 0.86954 1.22173 0.93032 1.01833 1.16160 1.18942 0.89433 0.86785 0.86931 1.45145 1.09079 1.02181 1.76642 1.20008 0.92625 0.78109 1.01653 1.19190 1.07084 1.04147 0.92826 1.20778 0.96445 0.95947 0.96820 1.21264 1.02522 0.99651 0.97906 1.18007 0.90576 0.91014 0.91970 1.19905 1.16922 1.12399 1.03424 0.90594 1.26764 0.99704 0.97549 0.93921 1.69863 1.31276 1.31654 1.11646 0.85215 0.77773 0.78215 0.78695 1.18615 1.18996 1.18352 1.21170 1.04375 1.04365 0.96664 1.20710 0.95680 0.95296 0.96840 1.67987 1.42618 0.98502 1.24776 1.25160 0.86921 0.96224 0.87540 1.68334 1.10155 1.30448 1.21812 0.88621 0.89760 0.88707 0.82699 0.76175 0.90640 0.91122 0.87649 0.88278 0.89963 0.88510 0.86524 0.76549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.21 71.24 0.73 -0.76 16 2 C 0.19 4.44 6.81 42.42 0.29 4.73 16 3 C -0.30 -7.60 9.08 22.58 0.20 -7.40 16 4 C 0.42 12.46 7.71 133.17 1.03 13.48 16 5 N -0.70 -21.04 5.70 -348.31 -1.99 -23.03 16 6 C 0.20 5.84 5.04 85.64 0.43 6.27 16 7 C -0.23 -8.79 5.27 -19.67 -0.10 -8.90 16 8 C -0.08 -3.49 9.67 22.22 0.21 -3.28 16 9 C -0.19 -9.82 8.70 22.73 0.20 -9.62 16 10 C 0.09 4.55 5.57 -21.29 -0.12 4.43 16 11 C -0.50 -26.28 9.05 23.46 0.21 -26.06 16 12 H 0.08 3.88 7.91 -2.91 -0.02 3.86 16 13 C 0.04 1.79 5.14 85.26 0.44 2.23 16 14 N -0.82 -41.75 10.97 21.83 0.24 -41.51 16 15 Si 0.98 37.29 29.60 68.60 2.03 39.32 16 16 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 17 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 18 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 19 C -0.25 -11.58 9.80 22.73 0.22 -11.35 16 20 C -0.07 -2.69 9.67 22.22 0.21 -2.47 16 21 N -0.61 -18.34 10.47 -197.61 -2.07 -20.41 16 22 C 0.33 8.42 12.28 180.90 2.22 10.64 16 23 N -0.59 -15.04 10.37 -188.34 -1.95 -16.99 16 24 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 26 H 0.09 1.07 8.09 -2.38 -0.02 1.05 16 27 H 0.16 3.25 6.87 -2.91 -0.02 3.23 16 28 H 0.40 12.95 8.59 -92.71 -0.80 12.16 16 29 H 0.08 1.99 7.91 -2.39 -0.02 1.97 16 30 H 0.07 1.94 7.91 -2.39 -0.02 1.92 16 31 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 32 H 0.10 5.31 6.18 -2.91 -0.02 5.30 16 33 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 34 H 0.10 4.35 8.06 -2.91 -0.02 4.32 16 35 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.22 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -59.65 312.69 2.75 -56.91 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.30 Total: 33.76 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 6.18 Total: -28.04 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -5.77 Total: -101.94 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Total: -59.65 2.75 -56.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559221937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.718 kcal (2) G-P(sol) polarization free energy of solvation -59.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds