Wall clock time and date at job start Mon Mar 30 2020 01:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38637 * 120.39904 * 2 1 4 4 C 1.38601 * 118.55209 * 179.97438 * 3 2 1 5 5 N 1.32277 * 119.19770 * 0.02562 * 4 3 2 6 6 C 1.32488 * 120.74535 * 359.97438 * 5 4 3 7 7 N 1.38521 * 119.21575 * 180.02562 * 6 5 4 8 8 C 1.39812 * 120.00309 * 354.46180 * 7 6 5 9 9 C 1.38903 * 120.07111 * 326.22870 * 8 7 6 10 10 C 1.38100 * 119.92574 * 179.74876 * 9 8 7 11 11 C 1.38286 * 120.07403 * 0.54992 * 10 9 8 12 12 C 1.50706 * 119.92888 * 179.72136 * 11 10 9 13 13 C 1.50692 * 109.47195 * 269.98313 * 12 11 10 14 14 H 1.08001 * 120.00369 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99803 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00345 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99801 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47358 * 59.99801 * 17 15 13 19 19 H 1.48501 * 109.46994 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47286 * 299.99602 * 17 15 13 21 21 C 1.38288 * 120.14883 * 359.70325 * 11 10 9 22 22 C 1.38107 * 120.07063 * 0.02562 * 21 11 10 23 23 N 1.32255 * 120.40053 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.46794 * 270.02104 * 1 2 3 25 25 H 1.09002 * 109.46769 * 30.02220 * 1 2 3 26 26 H 1.08997 * 109.46581 * 150.02301 * 1 2 3 27 27 H 1.07995 * 120.72558 * 359.95398 * 3 2 1 28 28 H 1.07999 * 120.39237 * 179.97438 * 4 3 2 29 29 H 0.97004 * 120.00087 * 174.45866 * 7 6 5 30 30 H 1.08001 * 120.03393 * 0.02562 * 9 8 7 31 31 H 1.08004 * 119.96366 * 180.27907 * 10 9 8 32 32 H 1.09005 * 109.46622 * 29.98318 * 12 11 10 33 33 H 1.08996 * 109.46729 * 149.98026 * 12 11 10 34 34 H 0.97004 * 120.00627 * 179.97438 * 16 15 13 35 35 H 1.07994 * 119.97074 * 179.97438 * 21 11 10 36 36 H 1.07995 * 120.04063 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2086 1.1958 0.0000 4 6 3.5939 1.1511 0.0005 5 7 4.2016 -0.0238 0.0005 6 6 3.5014 -1.1485 0.0005 7 7 4.1705 -2.3615 0.0010 8 6 5.5634 -2.3916 -0.1153 9 6 6.2182 -1.4400 -0.8867 10 6 7.5946 -1.4695 -0.9953 11 6 8.3200 -2.4517 -0.3463 12 6 9.8215 -2.4846 -0.4722 13 6 10.2079 -3.3342 -1.6553 14 1 9.4429 -3.8038 -2.2558 15 6 11.5383 -3.5128 -1.9705 16 7 12.4699 -2.9414 -1.2390 17 14 12.0173 -4.5666 -3.4367 18 1 11.4298 -3.9910 -4.6731 19 1 13.4968 -4.5988 -3.5607 20 1 11.5063 -5.9472 -3.2421 21 6 7.6709 -3.4038 0.4182 22 6 6.2951 -3.3767 0.5356 23 7 2.1763 -1.1407 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3632 -0.8902 -0.5135 27 1 1.6871 2.1415 -0.0007 28 1 4.1700 2.0646 0.0001 29 1 3.6725 -3.1900 0.0821 30 1 5.6518 -0.6753 -1.3974 31 1 8.1047 -0.7272 -1.5913 32 1 10.1963 -1.4710 -0.6148 33 1 10.2529 -2.9072 0.4351 34 1 13.4058 -3.0673 -1.4606 35 1 8.2403 -4.1699 0.9235 36 1 5.7887 -4.1207 1.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559283556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:32 Heat of formation + Delta-G solvation = 77.010108 kcal Electronic energy + Delta-G solvation = -18862.709161 eV Core-core repulsion = 15925.801987 eV Total energy + Delta-G solvation = -2936.907173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.15133 -38.88560 -35.99282 -34.28585 -33.19297 -31.86377 -30.29526 -29.95661 -28.54468 -26.49338 -24.02086 -23.46404 -22.20574 -21.91306 -20.16174 -18.24526 -17.43657 -16.33192 -16.16788 -15.78220 -15.46519 -14.88113 -14.49729 -14.16804 -14.10251 -13.46825 -13.35180 -12.98289 -12.73383 -12.59319 -12.57233 -12.10751 -11.48487 -11.24535 -11.03546 -10.89737 -10.64608 -10.55356 -10.48547 -10.14982 -9.58496 -9.42549 -9.13446 -8.70563 -8.39696 -8.23541 -7.15881 -6.01080 -4.05231 0.98981 1.07166 2.08987 2.17888 2.82192 3.33715 3.37653 3.41054 3.79759 4.02529 4.38769 4.41231 4.58727 4.64122 5.03475 5.09856 5.22896 5.23552 5.32655 5.46873 5.56874 5.62520 5.68122 5.94925 6.10795 6.17916 6.23742 6.42718 6.68622 6.76911 6.96978 7.15568 7.22221 7.27365 7.49535 7.55484 7.77624 7.90520 7.94584 8.30562 8.35751 9.00029 9.58360 11.08288 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041537 B = 0.003370 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.929220 B = 8306.944015 C = 8432.446216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.213 3.787 3 C -0.294 4.294 4 C 0.190 3.810 5 N -0.552 5.552 6 C 0.565 3.435 7 N -0.632 5.632 8 C 0.121 3.879 9 C -0.110 4.110 10 C -0.107 4.107 11 C -0.044 4.044 12 C 0.049 3.951 13 C -0.511 4.511 14 H 0.057 0.943 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.107 4.107 22 C -0.145 4.145 23 N -0.572 5.572 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.141 0.859 28 H 0.168 0.832 29 H 0.418 0.582 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.122 0.878 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.684 6.896 3.398 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.065 3.935 3 C -0.320 4.320 4 C 0.023 3.977 5 N -0.274 5.274 6 C 0.209 3.791 7 N -0.260 5.260 8 C 0.027 3.973 9 C -0.130 4.130 10 C -0.126 4.126 11 C -0.045 4.045 12 C 0.012 3.988 13 C -0.549 4.549 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.125 4.125 22 C -0.166 4.166 23 N -0.296 5.296 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.159 0.841 28 H 0.185 0.815 29 H 0.256 0.744 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.140 0.860 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -20.874 6.037 3.403 21.994 hybrid contribution -0.295 -0.101 -0.744 0.807 sum -21.169 5.936 2.659 22.145 Atomic orbital electron populations 1.20771 0.88095 1.03866 1.03503 1.21379 0.96910 0.87480 0.87770 1.22368 0.96446 0.99979 1.13164 1.23055 0.91953 0.95327 0.87386 1.68259 1.40103 0.97924 1.21092 1.19284 0.84791 0.86734 0.88278 1.41485 1.04944 1.04296 1.75246 1.17399 0.80384 0.99432 1.00055 1.20931 0.94571 0.98967 0.98581 1.20953 0.92573 0.99201 0.99878 1.20687 0.99114 0.92093 0.92581 1.18332 0.84709 0.98077 0.97678 1.21044 0.91706 1.30168 1.12030 0.92523 1.25010 0.96558 0.95978 0.96789 1.69946 1.00362 1.43936 1.39147 0.86608 0.77208 0.80920 0.83007 1.20190 1.21264 1.20189 1.20850 0.92648 0.99146 0.99886 1.20707 0.94364 1.00078 1.01440 1.67661 1.07480 1.31311 1.23104 0.89802 0.90110 0.90139 0.84064 0.81499 0.74409 0.85984 0.86192 0.95337 0.95373 0.92814 0.86041 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.22 36.01 0.37 -0.33 16 2 C 0.21 2.26 6.82 -82.26 -0.56 1.70 16 3 C -0.29 -2.76 9.85 -39.30 -0.39 -3.15 16 4 C 0.19 2.12 11.30 -17.23 -0.19 1.93 16 5 N -0.55 -8.18 7.12 -13.90 -0.10 -8.28 16 6 C 0.56 8.47 8.16 -322.62 -2.63 5.84 16 7 N -0.63 -9.36 5.49 -11.62 -0.06 -9.43 16 8 C 0.12 2.07 6.27 -83.73 -0.53 1.54 16 9 C -0.11 -2.01 8.55 -39.39 -0.34 -2.35 16 10 C -0.11 -2.17 9.69 -39.61 -0.38 -2.56 16 11 C -0.04 -0.97 5.07 -104.58 -0.53 -1.50 16 12 C 0.05 1.27 5.10 -29.04 -0.15 1.12 16 13 C -0.51 -14.40 9.09 -34.44 -0.31 -14.71 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 17 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 C -0.11 -2.09 9.69 -39.61 -0.38 -2.48 16 22 C -0.15 -2.47 9.96 -39.38 -0.39 -2.86 16 23 N -0.57 -7.70 10.40 -10.12 -0.11 -7.81 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 29 H 0.42 5.24 8.93 -40.82 -0.36 4.87 16 30 H 0.12 2.15 6.30 -52.49 -0.33 1.82 16 31 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 32 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 314.50 15.07 4.74 4.74 Total: -1.00 -32.25 314.50 -10.79 -43.04 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.46 Total: 3.19 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -6.52 Total: -16.26 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.47 Total: -51.35 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.25 -10.79 -43.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559283556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.047 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds