Wall clock time and date at job start Mon Mar 30 2020 01:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38637 * 120.39904 * 2 1 4 4 C 1.38601 * 118.55209 * 179.97438 * 3 2 1 5 5 N 1.32277 * 119.19770 * 0.02562 * 4 3 2 6 6 C 1.32488 * 120.74535 * 359.97438 * 5 4 3 7 7 N 1.38521 * 119.21575 * 180.02562 * 6 5 4 8 8 C 1.39812 * 120.00309 * 354.46180 * 7 6 5 9 9 C 1.38903 * 120.07111 * 326.22870 * 8 7 6 10 10 C 1.38100 * 119.92574 * 179.74876 * 9 8 7 11 11 C 1.38286 * 120.07403 * 0.54992 * 10 9 8 12 12 C 1.50706 * 119.92888 * 179.72136 * 11 10 9 13 13 C 1.50692 * 109.47195 * 269.98313 * 12 11 10 14 14 H 1.08001 * 120.00369 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99803 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00345 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99801 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47358 * 59.99801 * 17 15 13 19 19 H 1.48501 * 109.46994 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47286 * 299.99602 * 17 15 13 21 21 C 1.38288 * 120.14883 * 359.70325 * 11 10 9 22 22 C 1.38107 * 120.07063 * 0.02562 * 21 11 10 23 23 N 1.32255 * 120.40053 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.46794 * 270.02104 * 1 2 3 25 25 H 1.09002 * 109.46769 * 30.02220 * 1 2 3 26 26 H 1.08997 * 109.46581 * 150.02301 * 1 2 3 27 27 H 1.07995 * 120.72558 * 359.95398 * 3 2 1 28 28 H 1.07999 * 120.39237 * 179.97438 * 4 3 2 29 29 H 0.97004 * 120.00087 * 174.45866 * 7 6 5 30 30 H 1.08001 * 120.03393 * 0.02562 * 9 8 7 31 31 H 1.08004 * 119.96366 * 180.27907 * 10 9 8 32 32 H 1.09005 * 109.46622 * 29.98318 * 12 11 10 33 33 H 1.08996 * 109.46729 * 149.98026 * 12 11 10 34 34 H 0.97004 * 120.00627 * 179.97438 * 16 15 13 35 35 H 1.07994 * 119.97074 * 179.97438 * 21 11 10 36 36 H 1.07995 * 120.04063 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2086 1.1958 0.0000 4 6 3.5939 1.1511 0.0005 5 7 4.2016 -0.0238 0.0005 6 6 3.5014 -1.1485 0.0005 7 7 4.1705 -2.3615 0.0010 8 6 5.5634 -2.3916 -0.1153 9 6 6.2182 -1.4400 -0.8867 10 6 7.5946 -1.4695 -0.9953 11 6 8.3200 -2.4517 -0.3463 12 6 9.8215 -2.4846 -0.4722 13 6 10.2079 -3.3342 -1.6553 14 1 9.4429 -3.8038 -2.2558 15 6 11.5383 -3.5128 -1.9705 16 7 12.4699 -2.9414 -1.2390 17 14 12.0173 -4.5666 -3.4367 18 1 11.4298 -3.9910 -4.6731 19 1 13.4968 -4.5988 -3.5607 20 1 11.5063 -5.9472 -3.2421 21 6 7.6709 -3.4038 0.4182 22 6 6.2951 -3.3767 0.5356 23 7 2.1763 -1.1407 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3632 -0.8902 -0.5135 27 1 1.6871 2.1415 -0.0007 28 1 4.1700 2.0646 0.0001 29 1 3.6725 -3.1900 0.0821 30 1 5.6518 -0.6753 -1.3974 31 1 8.1047 -0.7272 -1.5913 32 1 10.1963 -1.4710 -0.6148 33 1 10.2529 -2.9072 0.4351 34 1 13.4058 -3.0673 -1.4606 35 1 8.2403 -4.1699 0.9235 36 1 5.7887 -4.1207 1.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559283556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:32 Heat of formation + Delta-G solvation = 60.384802 kcal Electronic energy + Delta-G solvation = -18863.430088 eV Core-core repulsion = 15925.801987 eV Total energy + Delta-G solvation = -2937.628100 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.10254 -40.28520 -37.26513 -35.23704 -35.08371 -33.13511 -31.76511 -31.48320 -29.26786 -28.25728 -25.35980 -24.78568 -23.47151 -23.28700 -21.67102 -19.28284 -18.56242 -18.46723 -17.36974 -16.82605 -16.51040 -16.47855 -15.83083 -15.65651 -15.11486 -14.63469 -14.51856 -14.29793 -14.14230 -13.88616 -13.64713 -13.28152 -13.16366 -13.07445 -12.59241 -12.46028 -12.19859 -11.93629 -11.65336 -11.54644 -11.37150 -11.33437 -10.58419 -10.10823 -9.92522 -9.70340 -8.56055 -8.14795 -6.31295 0.02079 0.21545 0.60938 0.75838 1.40515 1.43288 1.51533 1.75463 2.41052 2.83745 3.08693 3.12344 3.21347 3.59253 3.75126 4.07579 4.18099 4.29419 4.40232 4.44081 4.64336 4.67037 4.69889 4.78300 4.86073 4.90961 5.13393 5.16749 5.31952 5.37017 5.44586 5.52321 5.59225 5.75773 5.83137 6.07941 6.12077 6.19478 6.34482 6.45231 6.81362 7.32855 7.37003 8.91031 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041537 B = 0.003370 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.929220 B = 8306.944015 C = 8432.446216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.196 3.804 3 C -0.274 4.274 4 C 0.174 3.826 5 N -0.586 5.586 6 C 0.543 3.457 7 N -0.633 5.633 8 C 0.140 3.860 9 C -0.110 4.110 10 C -0.115 4.115 11 C -0.077 4.077 12 C 0.059 3.941 13 C -0.528 4.528 14 H 0.054 0.946 15 C 0.004 3.996 16 N -0.931 5.931 17 Si 0.965 3.035 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.267 1.267 21 C -0.111 4.111 22 C -0.137 4.137 23 N -0.584 5.584 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.181 0.819 28 H 0.194 0.806 29 H 0.428 0.572 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.001 0.999 33 H 0.004 0.996 34 H 0.265 0.735 35 H 0.123 0.877 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.655 7.221 2.989 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.049 3.951 3 C -0.298 4.298 4 C 0.008 3.992 5 N -0.309 5.309 6 C 0.186 3.814 7 N -0.263 5.263 8 C 0.045 3.955 9 C -0.131 4.131 10 C -0.133 4.133 11 C -0.078 4.078 12 C 0.022 3.978 13 C -0.566 4.566 14 H 0.073 0.927 15 C -0.194 4.194 16 N -0.571 5.571 17 Si 0.789 3.211 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.192 1.192 21 C -0.130 4.130 22 C -0.158 4.158 23 N -0.308 5.308 24 H 0.116 0.884 25 H 0.126 0.874 26 H 0.095 0.905 27 H 0.199 0.801 28 H 0.211 0.789 29 H 0.267 0.733 30 H 0.147 0.853 31 H 0.132 0.868 32 H 0.020 0.980 33 H 0.023 0.977 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -23.907 6.401 3.000 24.931 hybrid contribution 0.406 -0.043 -0.556 0.689 sum -23.502 6.358 2.444 24.469 Atomic orbital electron populations 1.20892 0.85166 1.05044 1.04680 1.22187 0.98819 0.87187 0.86898 1.22812 0.95770 1.01279 1.09971 1.23639 0.93350 0.95124 0.87062 1.68196 1.41430 0.99007 1.22256 1.19417 0.85545 0.86713 0.89685 1.41346 1.03827 1.05153 1.75980 1.17447 0.81736 0.98192 0.98152 1.20944 0.93551 0.99673 0.98888 1.20895 0.93552 0.98858 1.00029 1.20368 0.96891 0.94668 0.95831 1.18063 0.87800 0.95878 0.96036 1.21375 0.92060 1.30467 1.12730 0.92736 1.25927 0.96467 0.97234 0.99779 1.70073 1.00760 1.45292 1.40954 0.85506 0.77072 0.79260 0.79253 1.19397 1.20548 1.19196 1.20893 0.93985 0.98592 0.99542 1.20925 0.93178 1.00626 1.01064 1.67709 1.06795 1.32911 1.23404 0.88428 0.87382 0.90536 0.80119 0.78916 0.73273 0.85296 0.86825 0.98019 0.97722 0.92579 0.85893 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.22 71.24 0.73 -0.24 16 2 C 0.20 3.58 6.82 42.59 0.29 3.87 16 3 C -0.27 -4.18 9.85 22.45 0.22 -3.96 16 4 C 0.17 3.47 11.30 84.71 0.96 4.43 16 5 N -0.59 -16.67 7.12 -197.89 -1.41 -18.08 16 6 C 0.54 15.56 8.16 261.42 2.13 17.69 16 7 N -0.63 -17.93 5.49 -190.69 -1.05 -18.98 16 8 C 0.14 4.66 6.27 38.19 0.24 4.90 16 9 C -0.11 -4.03 8.55 22.40 0.19 -3.83 16 10 C -0.11 -4.80 9.69 22.25 0.22 -4.59 16 11 C -0.08 -3.52 5.07 -19.84 -0.10 -3.62 16 12 C 0.06 3.25 5.10 29.10 0.15 3.40 16 13 C -0.53 -30.78 9.09 25.60 0.23 -30.55 16 14 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 15 C 0.00 0.23 5.46 84.66 0.46 0.69 16 16 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 17 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 C -0.11 -4.43 9.69 22.25 0.22 -4.22 16 22 C -0.14 -4.52 9.96 22.40 0.22 -4.29 16 23 N -0.58 -14.66 10.40 -185.92 -1.93 -16.59 16 24 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.11 0.46 8.10 -2.39 -0.02 0.44 16 26 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 28 H 0.19 2.58 8.06 -2.91 -0.02 2.55 16 29 H 0.43 10.04 8.93 -92.71 -0.83 9.21 16 30 H 0.13 4.53 6.30 -2.91 -0.02 4.51 16 31 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 32 H 0.00 0.09 8.08 -2.38 -0.02 0.07 16 33 H 0.00 0.26 8.08 -2.39 -0.02 0.24 16 34 H 0.27 15.22 8.31 -92.71 -0.77 14.44 16 35 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 36 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -72.07 314.50 4.35 -67.72 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.27 Total: 15.92 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 6.16 Total: -20.31 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -4.10 Total: -110.26 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -72.07 4.35 -67.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559283556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.106 kcal (2) G-P(sol) polarization free energy of solvation -72.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds