Wall clock time and date at job start Mon Mar 30 2020 01:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38671 * 120.78718 * 2 1 4 4 C 1.38180 * 119.16093 * 179.97438 * 3 2 1 5 5 N 1.31891 * 120.76782 * 0.02562 * 4 3 2 6 6 C 1.31861 * 121.72178 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76588 * 359.73182 * 6 5 4 8 8 C 1.50695 * 120.42362 * 180.26609 * 7 6 5 9 9 N 1.46498 * 109.47367 * 260.27638 * 8 7 6 10 10 C 1.38821 * 119.99736 * 179.97438 * 9 8 7 11 11 C 1.39798 * 119.58988 * 359.72321 * 10 9 8 12 12 C 1.38593 * 119.49233 * 179.79358 * 11 10 9 13 13 C 1.38387 * 118.68016 * 0.47522 * 12 11 10 14 14 C 1.40555 * 119.15033 * 359.74789 * 13 12 11 15 15 C 1.41311 * 119.78107 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00521 * 0.02562 * 15 14 13 17 17 C 1.40026 * 120.00037 * 180.02562 * 15 14 13 18 18 N 1.30749 * 119.99561 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00463 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47188 * 89.99799 * 19 17 15 21 21 H 1.48503 * 109.47332 * 209.99694 * 19 17 15 22 22 H 1.48492 * 109.47069 * 329.99989 * 19 17 15 23 23 N 1.31961 * 119.58304 * 179.97438 * 10 9 8 24 24 H 1.09002 * 109.47152 * 90.00212 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00313 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00294 * 1 2 3 27 27 H 1.07995 * 120.42093 * 359.95305 * 3 2 1 28 28 H 1.08001 * 119.62114 * 179.97438 * 4 3 2 29 29 H 1.07996 * 119.61320 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.46853 * 20.27961 * 8 7 6 31 31 H 1.08997 * 109.47264 * 140.27157 * 8 7 6 32 32 H 0.96999 * 120.00383 * 359.97438 * 9 8 7 33 33 H 1.08001 * 120.24978 * 359.97438 * 11 10 9 34 34 H 1.07997 * 120.65806 * 180.22630 * 12 11 10 35 35 H 1.08004 * 120.42114 * 179.77342 * 13 12 11 36 36 H 0.97003 * 120.00142 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0001 0.0005 6 6 3.5983 -1.1516 0.0005 7 6 2.2167 -1.1909 0.0061 8 6 1.4909 -2.5116 0.0121 9 7 1.0458 -2.8304 -1.3468 10 6 0.3504 -4.0067 -1.5912 11 6 0.0845 -4.8836 -0.5354 12 6 -0.6137 -6.0554 -0.7810 13 6 -1.0203 -6.3274 -2.0755 14 6 -0.7184 -5.4083 -3.0953 15 6 -1.1267 -5.6730 -4.4220 16 1 -1.6691 -6.5787 -4.6497 17 6 -0.8280 -4.7608 -5.4416 18 7 -0.1718 -3.6641 -5.1659 19 14 -1.3670 -5.1109 -7.1955 20 1 -2.7193 -4.5401 -7.4211 21 1 -0.4044 -4.4921 -8.1420 22 1 -1.4058 -6.5785 -7.4178 23 7 -0.0471 -4.2856 -2.8183 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6967 2.1377 -0.0008 28 1 4.1583 2.0754 0.0001 29 1 4.1586 -2.0749 0.0001 30 1 2.1621 -3.2934 0.3675 31 1 0.6258 -2.4478 0.6722 32 1 1.2370 -2.2197 -2.0756 33 1 0.4181 -4.6483 0.4645 34 1 -0.8326 -6.7444 0.0212 35 1 -1.5629 -7.2340 -2.2993 36 1 0.0349 -3.0320 -5.8721 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560569577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:50 Heat of formation + Delta-G solvation = 69.205434 kcal Electronic energy + Delta-G solvation = -19356.860450 eV Core-core repulsion = 16419.614841 eV Total energy + Delta-G solvation = -2937.245609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.36523 -38.22855 -35.61585 -33.82393 -33.16543 -31.58134 -30.31761 -28.84700 -27.85166 -25.61049 -25.30311 -22.72843 -21.72158 -21.26283 -20.27886 -17.37047 -16.70992 -16.66266 -16.26317 -15.20612 -14.86530 -14.58556 -14.35369 -13.91235 -13.59119 -13.33710 -13.13904 -12.83280 -12.74972 -12.64607 -12.43455 -11.89076 -11.83952 -11.21370 -11.18576 -10.98811 -10.62750 -10.46596 -9.95064 -9.56331 -9.44253 -9.41734 -9.06684 -8.89368 -7.91590 -7.51357 -6.53462 -6.32984 -4.47731 1.04663 1.23312 2.87400 3.11199 3.14390 3.23262 3.29703 3.69836 3.98363 4.34766 4.46065 4.68442 4.71449 4.83298 4.91103 4.98998 5.39849 5.47846 5.56514 5.64649 5.78150 5.88564 6.01096 6.09745 6.11167 6.15259 6.41749 6.55952 6.69301 6.84553 6.88847 6.92951 7.24614 7.58568 7.80160 7.90985 7.94746 8.16038 8.34939 8.66336 8.79895 9.11210 10.24131 10.40006 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.004765 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.914957 B = 5874.749677 C = 6660.091385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.020 4.020 3 C -0.180 4.180 4 C 0.099 3.901 5 N -0.493 5.493 6 C 0.120 3.880 7 C -0.150 4.150 8 C 0.186 3.814 9 N -0.733 5.733 10 C 0.412 3.588 11 C -0.368 4.368 12 C -0.031 4.031 13 C -0.316 4.316 14 C 0.293 3.707 15 C -0.434 4.434 16 H 0.083 0.917 17 C 0.072 3.928 18 N -0.716 5.716 19 Si 0.904 3.096 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.262 1.262 23 N -0.531 5.531 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.133 0.867 28 H 0.153 0.847 29 H 0.156 0.844 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 8.638 7.936 12.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.058 4.058 5 N -0.202 5.202 6 C -0.038 4.038 7 C -0.152 4.152 8 C 0.060 3.940 9 N -0.371 5.371 10 C 0.172 3.828 11 C -0.394 4.394 12 C -0.056 4.056 13 C -0.339 4.339 14 C 0.166 3.834 15 C -0.466 4.466 16 H 0.101 0.899 17 C -0.153 4.153 18 N -0.337 5.337 19 Si 0.729 3.271 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.186 1.186 23 N -0.252 5.252 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.151 0.849 28 H 0.170 0.830 29 H 0.174 0.826 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.230 0.770 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.256 9.352 7.364 12.641 hybrid contribution -1.218 -0.430 -0.332 1.333 sum 3.038 8.922 7.032 11.759 Atomic orbital electron populations 1.20902 0.89960 1.03181 1.03679 1.20298 0.97019 0.92334 0.93241 1.22021 0.95610 0.98571 1.03788 1.22726 0.91777 0.96252 0.95012 1.67717 1.41142 0.98461 1.12899 1.22741 0.91061 0.96277 0.93678 1.20923 0.95223 0.95801 1.03286 1.19823 0.97003 0.91004 0.86162 1.44092 1.63232 1.22519 1.07211 1.18493 0.88547 0.85071 0.90692 1.20595 1.20090 1.01242 0.97496 1.20589 0.94666 0.94783 0.95539 1.21538 1.14854 1.03500 0.94025 1.18187 0.86755 0.85820 0.92659 1.19587 1.30931 1.05131 0.90997 0.89898 1.26045 0.93925 0.94507 1.00867 1.70153 1.24262 1.06135 1.33191 0.86386 0.79120 0.79875 0.81746 1.19512 1.20262 1.18577 1.68201 1.19774 1.21467 1.15783 0.89846 0.91405 0.90363 0.84931 0.82987 0.82644 0.92018 0.91848 0.76980 0.89222 0.88952 0.88732 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.68 36.01 0.35 -1.06 16 2 C -0.02 -0.26 5.92 -104.31 -0.62 -0.88 16 3 C -0.18 -1.99 9.82 -39.44 -0.39 -2.38 16 4 C 0.10 1.14 11.18 -17.55 -0.20 0.95 16 5 N -0.49 -6.82 10.36 -13.25 -0.14 -6.96 16 6 C 0.12 1.64 10.83 -17.55 -0.19 1.45 16 7 C -0.15 -2.06 5.27 -104.48 -0.55 -2.61 16 8 C 0.19 2.84 4.46 -5.20 -0.02 2.82 16 9 N -0.73 -14.35 5.71 -61.57 -0.35 -14.71 16 10 C 0.41 9.87 7.65 -155.32 -1.19 8.68 16 11 C -0.37 -8.33 9.34 -38.87 -0.36 -8.69 16 12 C -0.03 -0.72 10.15 -39.40 -0.40 -1.12 16 13 C -0.32 -7.97 9.83 -38.65 -0.38 -8.35 16 14 C 0.29 8.12 6.55 -85.00 -0.56 7.57 16 15 C -0.43 -11.77 9.14 -37.74 -0.34 -12.11 16 16 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 17 C 0.07 1.84 5.50 -17.34 -0.10 1.74 16 18 N -0.72 -19.05 11.46 55.55 0.64 -18.41 16 19 Si 0.90 18.76 29.56 -169.99 -5.02 13.73 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 N -0.53 -14.55 7.89 -10.33 -0.08 -14.63 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 26 H 0.08 0.96 6.26 -51.93 -0.33 0.64 16 27 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.16 1.91 8.04 -52.49 -0.42 1.49 16 30 H 0.06 0.92 7.79 -51.93 -0.40 0.52 16 31 H 0.06 0.94 6.31 -51.93 -0.33 0.61 16 32 H 0.40 8.03 8.58 -40.82 -0.35 7.68 16 33 H 0.09 1.78 6.68 -52.49 -0.35 1.43 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.09 2.22 8.06 -52.48 -0.42 1.80 16 36 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 LS Contribution 309.89 15.07 4.67 4.67 Total: -1.00 -30.25 309.89 -9.49 -39.75 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -4.26 Total: 10.55 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -4.94 Total: -13.99 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.07 Total: -54.71 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.25 -9.49 -39.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560569577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.952 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds