Wall clock time and date at job start Mon Mar 30 2020 01:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38671 * 120.78718 * 2 1 4 4 C 1.38180 * 119.16093 * 179.97438 * 3 2 1 5 5 N 1.31891 * 120.76782 * 0.02562 * 4 3 2 6 6 C 1.31861 * 121.72178 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.76588 * 359.73182 * 6 5 4 8 8 C 1.50695 * 120.42362 * 180.26609 * 7 6 5 9 9 N 1.46498 * 109.47367 * 260.27638 * 8 7 6 10 10 C 1.38821 * 119.99736 * 179.97438 * 9 8 7 11 11 C 1.39798 * 119.58988 * 359.72321 * 10 9 8 12 12 C 1.38593 * 119.49233 * 179.79358 * 11 10 9 13 13 C 1.38387 * 118.68016 * 0.47522 * 12 11 10 14 14 C 1.40555 * 119.15033 * 359.74789 * 13 12 11 15 15 C 1.41311 * 119.78107 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00521 * 0.02562 * 15 14 13 17 17 C 1.40026 * 120.00037 * 180.02562 * 15 14 13 18 18 N 1.30749 * 119.99561 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00463 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47188 * 89.99799 * 19 17 15 21 21 H 1.48503 * 109.47332 * 209.99694 * 19 17 15 22 22 H 1.48492 * 109.47069 * 329.99989 * 19 17 15 23 23 N 1.31961 * 119.58304 * 179.97438 * 10 9 8 24 24 H 1.09002 * 109.47152 * 90.00212 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00313 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00294 * 1 2 3 27 27 H 1.07995 * 120.42093 * 359.95305 * 3 2 1 28 28 H 1.08001 * 119.62114 * 179.97438 * 4 3 2 29 29 H 1.07996 * 119.61320 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.46853 * 20.27961 * 8 7 6 31 31 H 1.08997 * 109.47264 * 140.27157 * 8 7 6 32 32 H 0.96999 * 120.00383 * 359.97438 * 9 8 7 33 33 H 1.08001 * 120.24978 * 359.97438 * 11 10 9 34 34 H 1.07997 * 120.65806 * 180.22630 * 12 11 10 35 35 H 1.08004 * 120.42114 * 179.77342 * 13 12 11 36 36 H 0.97003 * 120.00142 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0001 0.0005 6 6 3.5983 -1.1516 0.0005 7 6 2.2167 -1.1909 0.0061 8 6 1.4909 -2.5116 0.0121 9 7 1.0458 -2.8304 -1.3468 10 6 0.3504 -4.0067 -1.5912 11 6 0.0845 -4.8836 -0.5354 12 6 -0.6137 -6.0554 -0.7810 13 6 -1.0203 -6.3274 -2.0755 14 6 -0.7184 -5.4083 -3.0953 15 6 -1.1267 -5.6730 -4.4220 16 1 -1.6691 -6.5787 -4.6497 17 6 -0.8280 -4.7608 -5.4416 18 7 -0.1718 -3.6641 -5.1659 19 14 -1.3670 -5.1109 -7.1955 20 1 -2.7193 -4.5401 -7.4211 21 1 -0.4044 -4.4921 -8.1420 22 1 -1.4058 -6.5785 -7.4178 23 7 -0.0471 -4.2856 -2.8183 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6967 2.1377 -0.0008 28 1 4.1583 2.0754 0.0001 29 1 4.1586 -2.0749 0.0001 30 1 2.1621 -3.2934 0.3675 31 1 0.6258 -2.4478 0.6722 32 1 1.2370 -2.2197 -2.0756 33 1 0.4181 -4.6483 0.4645 34 1 -0.8326 -6.7444 0.0212 35 1 -1.5629 -7.2340 -2.2993 36 1 0.0349 -3.0320 -5.8721 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560569577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:50 Heat of formation + Delta-G solvation = 51.695057 kcal Electronic energy + Delta-G solvation = -19357.619757 eV Core-core repulsion = 16419.614841 eV Total energy + Delta-G solvation = -2938.004916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36694 -40.03961 -37.06464 -35.36934 -34.56923 -32.86924 -32.14441 -30.48755 -28.88473 -27.29919 -26.78381 -23.80782 -23.31150 -22.69070 -21.89733 -19.25801 -18.21838 -17.70877 -17.31329 -16.76221 -16.49763 -16.09694 -15.70076 -15.30979 -14.97262 -14.77212 -14.66796 -14.11949 -13.91559 -13.75227 -13.60643 -13.52526 -13.22213 -12.82223 -12.72507 -12.58866 -12.25849 -12.15571 -11.74713 -11.30590 -10.69520 -10.43895 -10.40894 -10.05486 -9.82083 -9.43185 -8.29596 -8.22217 -6.47083 0.06756 0.26479 1.07118 1.36268 1.41415 1.54345 1.58826 2.25093 2.56705 2.93386 3.00882 3.47756 3.70049 3.79470 3.91234 3.95967 4.10169 4.38867 4.48501 4.52576 4.58781 4.67976 4.71341 4.81288 4.86809 4.99633 5.02199 5.04487 5.12426 5.18125 5.36470 5.43470 5.72557 5.75768 5.97996 6.07690 6.23140 6.55289 6.82931 6.92729 6.98955 7.21818 8.35352 8.51754 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.004765 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.914957 B = 5874.749677 C = 6660.091385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.029 4.029 3 C -0.174 4.174 4 C 0.097 3.903 5 N -0.516 5.516 6 C 0.109 3.891 7 C -0.162 4.162 8 C 0.189 3.811 9 N -0.726 5.726 10 C 0.396 3.604 11 C -0.365 4.365 12 C -0.029 4.029 13 C -0.344 4.344 14 C 0.260 3.740 15 C -0.473 4.473 16 H 0.086 0.914 17 C 0.027 3.973 18 N -0.752 5.752 19 Si 0.984 3.016 20 H -0.263 1.263 21 H -0.270 1.270 22 H -0.257 1.257 23 N -0.565 5.565 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.165 0.835 28 H 0.184 0.816 29 H 0.160 0.840 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.389 0.611 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 9.837 8.605 13.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.037 4.037 3 C -0.193 4.193 4 C -0.059 4.059 5 N -0.225 5.225 6 C -0.048 4.048 7 C -0.164 4.164 8 C 0.065 3.935 9 N -0.361 5.361 10 C 0.156 3.844 11 C -0.391 4.391 12 C -0.053 4.053 13 C -0.367 4.367 14 C 0.133 3.867 15 C -0.505 4.505 16 H 0.104 0.896 17 C -0.194 4.194 18 N -0.375 5.375 19 Si 0.804 3.196 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.180 1.180 23 N -0.288 5.288 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.087 0.913 27 H 0.182 0.818 28 H 0.201 0.799 29 H 0.178 0.822 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.223 0.777 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.119 0.881 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.362 10.563 8.084 13.998 hybrid contribution -1.177 -0.700 -0.374 1.420 sum 3.185 9.863 7.710 12.918 Atomic orbital electron populations 1.20875 0.89462 1.04093 1.02891 1.20518 0.97515 0.92635 0.93078 1.22357 0.95535 0.99240 1.02198 1.23318 0.92462 0.96646 0.93514 1.67751 1.41835 0.99117 1.13788 1.22852 0.91158 0.96790 0.93992 1.20769 0.95252 0.95405 1.04974 1.19932 0.97462 0.92282 0.83864 1.44239 1.62101 1.20925 1.08813 1.18923 0.88590 0.86520 0.90378 1.20957 1.19015 1.00652 0.98496 1.21006 0.93374 0.95318 0.95623 1.21692 1.16329 1.03816 0.94847 1.18650 0.87482 0.86756 0.93819 1.19937 1.32436 1.06145 0.91950 0.89621 1.26929 0.93492 0.93872 1.05128 1.70254 1.25288 1.07093 1.34820 0.85191 0.78800 0.79824 0.75746 1.18764 1.19457 1.18034 1.68168 1.20914 1.21994 1.17703 0.91382 0.88678 0.91339 0.81781 0.79875 0.82248 0.91452 0.91083 0.77701 0.86188 0.85282 0.88070 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.68 71.24 0.69 -1.86 16 2 C -0.03 -0.68 5.92 -19.66 -0.12 -0.80 16 3 C -0.17 -3.35 9.82 22.36 0.22 -3.13 16 4 C 0.10 1.99 11.18 84.67 0.95 2.94 16 5 N -0.52 -13.53 10.36 -195.84 -2.03 -15.56 16 6 C 0.11 2.89 10.83 84.68 0.92 3.81 16 7 C -0.16 -4.28 5.27 -19.78 -0.10 -4.39 16 8 C 0.19 5.62 4.46 85.63 0.38 6.00 16 9 N -0.73 -28.55 5.71 -348.72 -1.99 -30.54 16 10 C 0.40 19.17 7.65 133.42 1.02 20.19 16 11 C -0.37 -16.15 9.34 22.73 0.21 -15.94 16 12 C -0.03 -1.30 10.15 22.39 0.23 -1.07 16 13 C -0.34 -17.59 9.83 22.87 0.22 -17.36 16 14 C 0.26 14.90 6.55 40.18 0.26 15.16 16 15 C -0.47 -26.45 9.14 23.46 0.21 -26.24 16 16 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 17 C 0.03 1.43 5.50 85.29 0.47 1.90 16 18 N -0.75 -41.14 11.46 21.84 0.25 -40.89 16 19 Si 0.98 39.00 29.56 68.60 2.03 41.03 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 23 N -0.57 -31.88 7.89 -186.59 -1.47 -33.35 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.09 1.51 8.10 -2.39 -0.02 1.49 16 26 H 0.07 1.61 6.26 -2.38 -0.01 1.60 16 27 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 28 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.16 3.89 8.04 -2.91 -0.02 3.87 16 30 H 0.07 1.93 7.79 -2.39 -0.02 1.91 16 31 H 0.07 2.02 6.31 -2.39 -0.02 2.00 16 32 H 0.39 16.17 8.58 -92.71 -0.80 15.37 16 33 H 0.12 4.48 6.68 -2.91 -0.02 4.46 16 34 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 36 H 0.27 13.63 8.29 -92.71 -0.77 12.86 16 Total: -1.00 -66.96 309.89 2.66 -64.30 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: 0.31 Total: 35.80 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 5.57 Total: -20.79 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -5.24 Total: -120.34 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -66.96 2.66 -64.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560569577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.994 kcal (2) G-P(sol) polarization free energy of solvation -66.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds