Wall clock time and date at job start Mon Mar 30 2020 00:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47504 * 2 1 4 4 C 1.50693 * 109.47418 * 239.99687 * 2 1 3 5 5 H 1.08003 * 120.00142 * 275.30572 * 4 2 1 6 6 C 1.37875 * 120.00215 * 95.30577 * 4 2 1 7 7 N 1.31523 * 120.00282 * 181.92244 * 6 4 2 8 8 Si 1.86802 * 119.99961 * 1.91631 * 6 4 2 9 9 H 1.48501 * 109.47009 * 85.04897 * 8 6 4 10 10 H 1.48496 * 109.46943 * 205.04794 * 8 6 4 11 11 H 1.48496 * 109.47236 * 325.05065 * 8 6 4 12 12 N 1.46504 * 109.47041 * 119.99595 * 2 1 3 13 13 C 1.34777 * 119.99818 * 275.00216 * 12 2 1 14 14 O 1.21284 * 120.00354 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99751 * 179.97438 * 13 12 2 16 16 H 1.09003 * 115.54381 * 52.26788 * 15 13 12 17 17 C 1.52980 * 117.49623 * 197.94147 * 15 13 12 18 18 C 1.53085 * 117.49902 * 266.61492 * 15 13 12 19 19 C 1.52932 * 117.36915 * 145.23136 * 18 15 13 20 20 C 1.53067 * 109.68249 * 279.49194 * 19 18 15 21 21 S 1.81622 * 109.05755 * 299.82529 * 20 19 18 22 22 C 1.81628 * 102.51072 * 55.76842 * 21 20 19 23 23 C 1.52932 * 117.36870 * 359.76381 * 18 15 13 24 24 H 1.09000 * 109.46989 * 176.34266 * 1 2 3 25 25 H 1.08998 * 109.47291 * 296.34580 * 1 2 3 26 26 H 1.08999 * 109.46818 * 56.34766 * 1 2 3 27 27 H 0.96994 * 119.99815 * 180.02562 * 7 6 4 28 28 H 0.96996 * 120.00196 * 95.00126 * 12 2 1 29 29 H 1.08998 * 117.49984 * 215.00075 * 17 15 13 30 30 H 1.09008 * 117.49776 * 0.02562 * 17 15 13 31 31 H 1.09004 * 109.43331 * 39.56011 * 19 18 15 32 32 H 1.08996 * 109.43196 * 159.42283 * 19 18 15 33 33 H 1.09007 * 109.53398 * 179.97438 * 20 19 18 34 34 H 1.08993 * 109.60998 * 59.74889 * 20 19 18 35 35 H 1.09002 * 109.54214 * 184.36662 * 22 21 20 36 36 H 1.09001 * 109.54414 * 64.10465 * 22 21 20 37 37 H 1.08993 * 109.43584 * 200.57316 * 23 18 15 38 38 H 1.09001 * 109.43734 * 320.43805 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.1309 -1.7860 -1.2305 6 6 2.3663 0.0125 -2.3558 7 7 2.7688 -0.6102 -3.4421 8 14 2.2470 1.8767 -2.3380 9 1 3.4973 2.4473 -1.7755 10 1 2.0559 2.3737 -3.7242 11 1 1.0931 2.2908 -1.5001 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8589 1.1588 2.4115 15 6 2.6487 -0.7286 3.5878 16 1 3.5853 -1.2731 3.4672 17 6 2.3854 -0.0672 4.9419 18 6 1.6042 -1.3207 4.5375 19 6 1.9599 -2.6278 5.2471 20 6 1.7297 -3.8079 4.2999 21 16 -0.0189 -3.8429 3.8101 22 6 -0.2667 -2.1822 3.1174 23 6 0.1321 -1.1394 4.1646 24 1 -0.3633 -1.0256 -0.0656 25 1 -0.3634 0.4561 0.9209 26 1 -0.3633 0.5695 -0.8555 27 1 3.0040 -0.1016 -4.2338 28 1 2.2490 -1.6317 1.1528 29 1 3.1486 -0.1766 5.7124 30 1 1.8488 0.8816 4.9427 31 1 3.0072 -2.6035 5.5485 32 1 1.3317 -2.7436 6.1303 33 1 1.9844 -4.7382 4.8079 34 1 2.3543 -3.6932 3.4140 35 1 -1.3159 -2.0504 2.8529 36 1 0.3527 -2.0617 2.2286 37 1 -0.4853 -1.2641 5.0541 38 1 -0.0183 -0.1398 3.7568 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565695117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:22 Heat of formation + Delta-G solvation = -30.710892 kcal Electronic energy + Delta-G solvation = -19415.739445 eV Core-core repulsion = 16577.312339 eV Total energy + Delta-G solvation = -2838.427106 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.11021 -37.63564 -34.93854 -32.39964 -32.37808 -31.75459 -29.85881 -25.51605 -25.17455 -23.60068 -23.30791 -20.72480 -19.83917 -19.04829 -17.43236 -16.70753 -16.24341 -15.48866 -15.01948 -14.69051 -14.15892 -14.13375 -13.80587 -13.50810 -13.34651 -12.92248 -12.63415 -12.53448 -12.40533 -12.32273 -11.84595 -11.55282 -11.39138 -11.19083 -10.86432 -10.62358 -10.55948 -10.37449 -9.98549 -9.90596 -9.66038 -9.22586 -9.16877 -8.75757 -8.13830 -7.66103 -6.26238 -4.30528 1.77988 2.53660 2.98811 3.23646 3.31395 3.38081 3.66653 3.89003 4.29347 4.54832 4.56924 4.63088 4.81272 4.87807 5.10382 5.13017 5.28645 5.32158 5.44851 5.51116 5.53596 5.65928 5.74635 5.82860 5.85144 6.04195 6.07441 6.15587 6.29066 6.46444 6.62935 6.88555 7.13295 7.33813 7.50661 8.09911 8.52706 8.74228 8.93062 9.35427 10.85439 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024940 B = 0.005976 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.416947 B = 4684.532975 C = 5143.018588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.232 3.768 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.888 5.888 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.699 5.699 13 C 0.532 3.468 14 O -0.557 6.557 15 C -0.179 4.179 16 H 0.122 0.878 17 C -0.134 4.134 18 C -0.116 4.116 19 C -0.080 4.080 20 C -0.081 4.081 21 S -0.271 6.271 22 C -0.082 4.082 23 C -0.086 4.086 24 H 0.047 0.953 25 H 0.028 0.972 26 H 0.053 0.947 27 H 0.268 0.732 28 H 0.392 0.608 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 -4.319 17.016 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.130 3.870 3 H 0.067 0.933 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.524 5.524 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.346 5.346 13 C 0.316 3.684 14 O -0.437 6.437 15 C -0.200 4.200 16 H 0.140 0.860 17 C -0.171 4.171 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.229 4.229 21 S -0.045 6.045 22 C -0.230 4.230 23 C -0.125 4.125 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.226 0.774 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.036 -4.305 16.877 17.680 hybrid contribution 1.124 1.420 -0.457 1.867 sum -1.913 -2.885 16.420 16.781 Atomic orbital electron populations 1.22237 0.98615 1.00499 0.99300 1.19102 0.90844 0.94256 0.82826 0.93338 1.21006 1.45171 0.95610 0.95102 0.90305 1.24940 0.93525 0.98582 0.95257 1.69879 1.43574 1.36233 1.02748 0.86898 0.79823 0.85824 0.77350 1.19907 1.21145 1.18517 1.46653 1.64557 1.13700 1.09724 1.19535 0.77993 0.86872 0.83952 1.90641 1.51752 1.16025 1.85254 1.22543 1.01129 1.05009 0.91365 0.85985 1.23070 1.01948 0.96607 0.95502 1.21634 0.93000 0.95157 1.01843 1.21295 1.02121 0.90880 0.97577 1.23357 0.95198 1.01770 1.02568 1.86691 1.14931 1.22111 1.80722 1.23516 1.05872 0.92434 1.01178 1.21310 0.92995 0.99465 0.98715 0.93397 0.95310 0.92840 0.92217 0.77446 0.88152 0.87497 0.90608 0.90009 0.87831 0.89580 0.87824 0.88473 0.90218 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.46 37.16 0.35 -2.80 16 2 C 0.23 5.40 2.18 -69.08 -0.15 5.25 16 3 H 0.05 1.25 4.84 -51.93 -0.25 1.00 16 4 C -0.53 -14.09 9.05 -34.44 -0.31 -14.40 16 5 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 8 Si 0.87 21.50 26.80 -169.99 -4.56 16.94 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.26 -6.29 6.71 56.52 0.38 -5.92 16 12 N -0.70 -13.62 3.87 -54.93 -0.21 -13.83 16 13 C 0.53 9.84 5.69 -10.98 -0.06 9.78 16 14 O -0.56 -12.37 15.97 5.55 0.09 -12.28 16 15 C -0.18 -2.45 5.90 -91.74 -0.54 -2.99 16 16 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 17 C -0.13 -1.58 9.39 -26.67 -0.25 -1.83 16 18 C -0.12 -1.32 1.76 -154.47 -0.27 -1.59 16 19 C -0.08 -0.73 5.46 -26.73 -0.15 -0.87 16 20 C -0.08 -0.80 6.47 37.19 0.24 -0.56 16 21 S -0.27 -3.34 22.25 -107.50 -2.39 -5.73 16 22 C -0.08 -1.07 6.42 37.20 0.24 -0.83 16 23 C -0.09 -1.07 4.89 -26.73 -0.13 -1.20 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 1.16 7.81 -51.93 -0.41 0.76 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.39 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.11 1.43 7.79 -51.92 -0.40 1.02 16 31 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.10 1.44 6.09 -51.93 -0.32 1.12 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.19 7.24 -51.93 -0.38 0.81 16 LS Contribution 315.71 15.07 4.76 4.76 Total: -1.00 -30.35 315.71 -8.57 -38.92 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.90 Total: 6.33 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -1.13 Total: -9.87 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.56 Total: -39.06 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.56 Total: 16.94 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -2.39 Total: -5.73 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.35 -8.57 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.205 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds