Wall clock time and date at job start Mon Mar 30 2020 00:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47504 * 2 1 4 4 C 1.50693 * 109.47418 * 239.99687 * 2 1 3 5 5 H 1.08003 * 120.00142 * 275.30572 * 4 2 1 6 6 C 1.37875 * 120.00215 * 95.30577 * 4 2 1 7 7 N 1.31523 * 120.00282 * 181.92244 * 6 4 2 8 8 Si 1.86802 * 119.99961 * 1.91631 * 6 4 2 9 9 H 1.48501 * 109.47009 * 85.04897 * 8 6 4 10 10 H 1.48496 * 109.46943 * 205.04794 * 8 6 4 11 11 H 1.48496 * 109.47236 * 325.05065 * 8 6 4 12 12 N 1.46504 * 109.47041 * 119.99595 * 2 1 3 13 13 C 1.34777 * 119.99818 * 275.00216 * 12 2 1 14 14 O 1.21284 * 120.00354 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99751 * 179.97438 * 13 12 2 16 16 H 1.09003 * 115.54381 * 52.26788 * 15 13 12 17 17 C 1.52980 * 117.49623 * 197.94147 * 15 13 12 18 18 C 1.53085 * 117.49902 * 266.61492 * 15 13 12 19 19 C 1.52932 * 117.36915 * 145.23136 * 18 15 13 20 20 C 1.53067 * 109.68249 * 279.49194 * 19 18 15 21 21 S 1.81622 * 109.05755 * 299.82529 * 20 19 18 22 22 C 1.81628 * 102.51072 * 55.76842 * 21 20 19 23 23 C 1.52932 * 117.36870 * 359.76381 * 18 15 13 24 24 H 1.09000 * 109.46989 * 176.34266 * 1 2 3 25 25 H 1.08998 * 109.47291 * 296.34580 * 1 2 3 26 26 H 1.08999 * 109.46818 * 56.34766 * 1 2 3 27 27 H 0.96994 * 119.99815 * 180.02562 * 7 6 4 28 28 H 0.96996 * 120.00196 * 95.00126 * 12 2 1 29 29 H 1.08998 * 117.49984 * 215.00075 * 17 15 13 30 30 H 1.09008 * 117.49776 * 0.02562 * 17 15 13 31 31 H 1.09004 * 109.43331 * 39.56011 * 19 18 15 32 32 H 1.08996 * 109.43196 * 159.42283 * 19 18 15 33 33 H 1.09007 * 109.53398 * 179.97438 * 20 19 18 34 34 H 1.08993 * 109.60998 * 59.74889 * 20 19 18 35 35 H 1.09002 * 109.54214 * 184.36662 * 22 21 20 36 36 H 1.09001 * 109.54414 * 64.10465 * 22 21 20 37 37 H 1.08993 * 109.43584 * 200.57316 * 23 18 15 38 38 H 1.09001 * 109.43734 * 320.43805 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.1309 -1.7860 -1.2305 6 6 2.3663 0.0125 -2.3558 7 7 2.7688 -0.6102 -3.4421 8 14 2.2470 1.8767 -2.3380 9 1 3.4973 2.4473 -1.7755 10 1 2.0559 2.3737 -3.7242 11 1 1.0931 2.2908 -1.5001 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8589 1.1588 2.4115 15 6 2.6487 -0.7286 3.5878 16 1 3.5853 -1.2731 3.4672 17 6 2.3854 -0.0672 4.9419 18 6 1.6042 -1.3207 4.5375 19 6 1.9599 -2.6278 5.2471 20 6 1.7297 -3.8079 4.2999 21 16 -0.0189 -3.8429 3.8101 22 6 -0.2667 -2.1822 3.1174 23 6 0.1321 -1.1394 4.1646 24 1 -0.3633 -1.0256 -0.0656 25 1 -0.3634 0.4561 0.9209 26 1 -0.3633 0.5695 -0.8555 27 1 3.0040 -0.1016 -4.2338 28 1 2.2490 -1.6317 1.1528 29 1 3.1486 -0.1766 5.7124 30 1 1.8488 0.8816 4.9427 31 1 3.0072 -2.6035 5.5485 32 1 1.3317 -2.7436 6.1303 33 1 1.9844 -4.7382 4.8079 34 1 2.3543 -3.6932 3.4140 35 1 -1.3159 -2.0504 2.8529 36 1 0.3527 -2.0617 2.2286 37 1 -0.4853 -1.2641 5.0541 38 1 -0.0183 -0.1398 3.7568 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565695117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:22 Heat of formation + Delta-G solvation = -49.102853 kcal Electronic energy + Delta-G solvation = -19416.536980 eV Core-core repulsion = 16577.312339 eV Total energy + Delta-G solvation = -2839.224641 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37289 -38.93369 -36.71343 -34.39549 -33.37568 -32.64748 -31.61761 -27.38277 -26.40451 -24.76512 -24.18800 -22.29252 -21.32139 -20.29426 -19.07197 -17.89500 -17.67993 -17.20855 -16.24093 -15.95754 -15.57363 -15.25990 -15.00784 -14.71153 -14.67132 -14.55963 -14.18591 -13.80457 -13.69638 -13.28417 -13.23022 -13.11542 -12.83226 -12.80876 -12.45978 -12.28887 -11.91635 -11.50534 -11.34556 -11.23610 -11.05057 -10.89574 -10.63129 -10.55923 -9.81827 -8.62656 -8.41636 -6.48207 0.86418 1.25863 1.30542 1.40749 1.62617 1.64490 2.23612 2.37350 2.67609 3.01570 3.59106 3.62586 3.71870 3.79342 4.00986 4.14389 4.24184 4.38216 4.43824 4.46111 4.54153 4.68348 4.72544 4.78423 4.82050 4.87743 4.94080 4.99356 5.05437 5.09060 5.19067 5.26351 5.33056 5.42037 5.72111 6.09176 6.56970 6.87413 7.18118 7.43463 8.73386 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024940 B = 0.005976 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.416947 B = 4684.532975 C = 5143.018588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.237 3.763 3 H 0.027 0.973 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.034 3.966 7 N -0.929 5.929 8 Si 0.926 3.074 9 H -0.276 1.276 10 H -0.276 1.276 11 H -0.256 1.256 12 N -0.698 5.698 13 C 0.531 3.469 14 O -0.597 6.597 15 C -0.194 4.194 16 H 0.145 0.855 17 C -0.124 4.124 18 C -0.100 4.100 19 C -0.073 4.073 20 C -0.075 4.075 21 S -0.293 6.293 22 C -0.080 4.080 23 C -0.084 4.084 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.271 0.729 28 H 0.401 0.599 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 -4.796 19.554 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.133 3.867 3 H 0.045 0.955 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.167 4.167 7 N -0.568 5.568 8 Si 0.751 3.249 9 H -0.201 1.201 10 H -0.202 1.202 11 H -0.180 1.180 12 N -0.346 5.346 13 C 0.319 3.681 14 O -0.479 6.479 15 C -0.215 4.215 16 H 0.163 0.837 17 C -0.161 4.161 18 C -0.100 4.100 19 C -0.111 4.111 20 C -0.223 4.223 21 S -0.067 6.067 22 C -0.228 4.228 23 C -0.123 4.123 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.236 0.764 29 H 0.153 0.847 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.144 0.856 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.554 -4.803 19.435 20.182 hybrid contribution 0.959 1.496 -1.194 2.141 sum -1.595 -3.307 18.241 18.607 Atomic orbital electron populations 1.22101 0.97140 1.01091 0.99420 1.18820 0.91875 0.92890 0.83111 0.95498 1.21186 1.44228 0.94711 0.96324 0.92619 1.25597 0.93692 1.02287 0.95098 1.69975 1.45506 1.37753 1.03521 0.86072 0.79685 0.81453 0.77693 1.20143 1.20171 1.18040 1.46382 1.64892 1.14038 1.09289 1.20282 0.76662 0.86430 0.84713 1.90617 1.53386 1.17986 1.85942 1.22490 1.02800 1.06518 0.89659 0.83728 1.23184 1.02340 0.95836 0.94719 1.21729 0.91564 0.96535 1.00204 1.21329 1.04063 0.88544 0.97187 1.23489 0.92615 1.03370 1.02854 1.86780 1.17765 1.21434 1.80747 1.23406 1.05363 0.93383 1.00669 1.21286 0.94394 0.97674 0.98955 0.92465 0.94441 0.93500 0.92009 0.76384 0.84694 0.89456 0.87861 0.88721 0.85579 0.89950 0.88158 0.90491 0.88666 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.91 9.46 71.98 0.68 -5.23 16 2 C 0.24 11.10 2.18 44.24 0.10 11.20 16 3 H 0.03 1.40 4.84 -2.38 -0.01 1.38 16 4 C -0.53 -28.38 9.05 25.60 0.23 -28.15 16 5 H 0.06 3.21 8.06 -2.91 -0.02 3.18 16 6 C 0.03 1.90 5.47 84.65 0.46 2.37 16 7 N -0.93 -55.35 13.96 21.45 0.30 -55.05 16 8 Si 0.93 44.73 26.80 68.60 1.84 46.57 16 9 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.26 -12.07 6.71 99.48 0.67 -11.41 16 12 N -0.70 -27.14 3.87 -446.09 -1.72 -28.86 16 13 C 0.53 19.36 5.69 87.66 0.50 19.86 16 14 O -0.60 -26.57 15.97 -3.04 -0.05 -26.62 16 15 C -0.19 -4.84 5.90 -11.52 -0.07 -4.91 16 16 H 0.15 2.98 8.14 -2.39 -0.02 2.96 16 17 C -0.12 -2.54 9.39 30.63 0.29 -2.26 16 18 C -0.10 -1.98 1.76 -52.15 -0.09 -2.07 16 19 C -0.07 -1.00 5.46 30.59 0.17 -0.83 16 20 C -0.08 -1.23 6.47 72.00 0.47 -0.76 16 21 S -0.29 -6.69 22.25 -56.49 -1.26 -7.95 16 22 C -0.08 -2.02 6.42 72.01 0.46 -1.56 16 23 C -0.08 -1.97 4.89 30.60 0.15 -1.82 16 24 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 2.02 7.81 -2.39 -0.02 2.01 16 27 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.40 14.14 8.31 -92.71 -0.77 13.37 16 29 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.09 2.20 7.79 -2.38 -0.02 2.18 16 31 H 0.10 0.97 8.08 -2.39 -0.02 0.95 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.08 2.25 6.09 -2.39 -0.01 2.23 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 38 H 0.05 1.59 7.24 -2.39 -0.02 1.57 16 Total: -1.00 -66.59 315.71 2.69 -63.89 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.24 Total: 22.19 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 3.34 Total: -14.17 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -1.43 Total: -83.91 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.05 Total: -26.62 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.84 Total: 46.57 kcal Atomic # 16 Polarization: -6.69 SS G_CDS: -1.26 Total: -7.95 kcal Total: -66.59 2.69 -63.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.790 kcal (2) G-P(sol) polarization free energy of solvation -66.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds