Wall clock time and date at job start Mon Mar 30 2020 00:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47214 * 2 1 4 4 C 1.50696 * 109.47272 * 120.00703 * 2 1 3 5 5 H 1.07999 * 120.00333 * 119.99745 * 4 2 1 6 6 C 1.37885 * 119.99789 * 299.99861 * 4 2 1 7 7 N 1.31516 * 119.99501 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99992 * 179.72567 * 6 4 2 9 9 H 1.48500 * 109.47307 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47218 * 120.00207 * 8 6 4 11 11 H 1.48503 * 109.47128 * 240.00178 * 8 6 4 12 12 N 1.46509 * 109.47369 * 240.00503 * 2 1 3 13 13 C 1.34778 * 119.99886 * 84.99389 * 12 2 1 14 14 O 1.21280 * 119.99990 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99720 * 179.97438 * 13 12 2 16 16 H 1.08991 * 115.55080 * 307.87775 * 15 13 12 17 17 C 1.52981 * 117.48902 * 162.19869 * 15 13 12 18 18 C 1.53095 * 117.48942 * 93.53147 * 15 13 12 19 19 C 1.52927 * 117.37142 * 0.22997 * 18 15 13 20 20 C 1.53077 * 109.68716 * 279.49794 * 19 18 15 21 21 S 1.81630 * 109.05430 * 299.82352 * 20 19 18 22 22 C 1.81618 * 102.50750 * 55.76361 * 21 20 19 23 23 C 1.52933 * 117.36991 * 214.77370 * 18 15 13 24 24 H 1.08998 * 109.47330 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47093 * 299.99505 * 1 2 3 26 26 H 1.09008 * 109.47099 * 59.99775 * 1 2 3 27 27 H 0.97003 * 119.99642 * 179.97438 * 7 6 4 28 28 H 0.96997 * 120.00025 * 265.00471 * 12 2 1 29 29 H 1.08991 * 117.50083 * 359.97438 * 17 15 13 30 30 H 1.09000 * 117.49692 * 145.00990 * 17 15 13 31 31 H 1.09004 * 109.43698 * 39.56565 * 19 18 15 32 32 H 1.09002 * 109.44095 * 159.42614 * 19 18 15 33 33 H 1.08998 * 109.53820 * 179.97438 * 20 19 18 34 34 H 1.08999 * 109.53777 * 59.69257 * 20 19 18 35 35 H 1.09004 * 109.54289 * 184.36071 * 22 21 20 36 36 H 1.09000 * 109.54524 * 64.10665 * 22 21 20 37 37 H 1.08999 * 109.43495 * 200.57207 * 23 18 15 38 38 H 1.09010 * 109.43363 * 320.47747 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9427 0.8294 2.6034 8 14 2.3156 -1.1247 4.0078 9 1 3.1357 -2.2949 3.6036 10 1 3.1433 -0.1960 4.8186 11 1 1.1572 -1.5874 4.8137 12 7 2.0184 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8589 1.1588 -2.4115 15 6 2.6500 -0.7283 -3.5876 16 1 3.5855 -1.2740 -3.4659 17 6 2.3895 -0.0655 -4.9415 18 6 1.6060 -1.3183 -4.5393 19 6 0.1337 -1.1355 -4.1686 20 6 -0.2681 -2.1786 -3.1227 21 16 -0.0214 -3.8391 -3.8162 22 6 1.7280 -3.8060 -4.3032 23 6 1.9611 -2.6255 -5.2493 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.7081 1.1606 3.4844 28 1 2.2490 -1.6317 -1.1528 29 1 1.8540 0.8838 -4.9425 30 1 3.1537 -0.1753 -5.7109 31 1 -0.0162 -0.1361 -3.7602 32 1 -0.4827 -1.2587 -5.0591 33 1 -1.3176 -2.0459 -2.8600 34 1 0.3501 -2.0596 -2.2330 35 1 1.9827 -4.7361 -4.8113 36 1 2.3513 -3.6911 -3.4164 37 1 1.3340 -2.7399 -6.1335 38 1 3.0091 -2.6027 -5.5484 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565695118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:24 Heat of formation + Delta-G solvation = -30.445216 kcal Electronic energy + Delta-G solvation = -19374.534702 eV Core-core repulsion = 16536.119117 eV Total energy + Delta-G solvation = -2838.415585 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.01399 -37.50875 -34.83327 -32.38694 -32.33733 -31.69745 -29.04230 -25.40712 -25.13645 -23.51779 -23.26356 -20.82040 -19.78405 -18.89174 -17.21839 -16.60877 -15.97808 -15.27016 -14.98112 -14.61112 -14.18867 -14.08140 -13.82294 -13.40380 -13.24998 -12.86158 -12.59349 -12.40069 -12.28043 -11.83398 -11.67748 -11.37931 -11.13765 -10.98445 -10.78882 -10.51080 -10.39649 -10.31346 -10.24078 -9.90040 -9.61278 -9.08129 -9.02588 -8.57886 -7.95428 -7.62108 -6.15009 -4.24224 1.82177 2.58023 3.09271 3.22231 3.30238 3.32842 3.74879 3.99676 4.34316 4.60094 4.62595 4.69335 4.88769 4.92829 5.15816 5.17788 5.33314 5.38056 5.50813 5.55822 5.57287 5.71261 5.80499 5.86676 5.92877 6.11238 6.14837 6.22329 6.78419 6.91436 7.11165 7.41680 7.52377 7.66637 7.88273 8.12050 8.62907 8.75643 9.08919 9.43699 10.90980 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022848 B = 0.005749 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.200813 B = 4869.135884 C = 5358.880121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.704 5.704 13 C 0.532 3.468 14 O -0.553 6.553 15 C -0.179 4.179 16 H 0.120 0.880 17 C -0.134 4.134 18 C -0.116 4.116 19 C -0.086 4.086 20 C -0.080 4.080 21 S -0.273 6.273 22 C -0.080 4.080 23 C -0.080 4.080 24 H 0.026 0.974 25 H 0.090 0.910 26 H 0.013 0.987 27 H 0.264 0.736 28 H 0.387 0.613 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 -7.749 -14.559 16.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.351 5.351 13 C 0.316 3.684 14 O -0.432 6.432 15 C -0.200 4.200 16 H 0.138 0.862 17 C -0.172 4.172 18 C -0.117 4.117 19 C -0.125 4.125 20 C -0.228 4.228 21 S -0.047 6.047 22 C -0.228 4.228 23 C -0.119 4.119 24 H 0.046 0.954 25 H 0.109 0.891 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.219 0.781 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.137 -7.624 -14.484 16.368 hybrid contribution 1.380 0.041 1.170 1.809 sum 1.517 -7.583 -13.314 15.397 Atomic orbital electron populations 1.22075 0.98409 0.99054 1.00864 1.18747 0.91018 0.93932 0.79976 0.93456 1.21250 1.32434 1.13186 0.90326 0.92071 1.24883 0.94782 0.94928 0.99066 1.69912 1.35845 1.22515 1.23797 0.86404 0.78624 0.79562 0.82590 1.19736 1.20868 1.20823 1.46538 1.64772 1.13350 1.10446 1.19427 0.78241 0.86865 0.83858 1.90653 1.51463 1.15971 1.85108 1.22555 1.00983 1.04957 0.91544 0.86215 1.23064 1.01918 0.96653 0.95517 1.21625 0.93058 0.95094 1.01883 1.21304 0.92913 0.99582 0.98659 1.23521 1.05955 0.92162 1.01196 1.86667 1.14790 1.22446 1.80786 1.23347 0.95246 1.01729 1.02517 1.21295 1.02032 0.90942 0.97594 0.95449 0.89150 0.96756 0.92615 0.78050 0.87466 0.88231 0.89914 0.90292 0.87820 0.88365 0.87905 0.89696 0.90032 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.26 37.16 0.34 -3.18 16 2 C 0.26 6.61 2.56 -69.08 -0.18 6.43 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.76 11.32 55.43 0.63 -24.13 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.70 -14.24 3.87 -54.93 -0.21 -14.46 16 13 C 0.53 10.27 5.68 -10.98 -0.06 10.20 16 14 O -0.55 -12.94 15.96 5.56 0.09 -12.85 16 15 C -0.18 -2.53 5.90 -91.73 -0.54 -3.07 16 16 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 17 C -0.13 -1.65 9.39 -26.67 -0.25 -1.90 16 18 C -0.12 -1.38 1.76 -154.46 -0.27 -1.66 16 19 C -0.09 -1.13 4.89 -26.73 -0.13 -1.27 16 20 C -0.08 -1.12 6.42 37.20 0.24 -0.88 16 21 S -0.27 -3.49 22.25 -107.50 -2.39 -5.89 16 22 C -0.08 -0.82 6.47 37.19 0.24 -0.57 16 23 C -0.08 -0.76 5.46 -26.73 -0.15 -0.90 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 26 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.39 6.99 8.26 -40.82 -0.34 6.66 16 29 H 0.11 1.50 7.78 -51.93 -0.40 1.10 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.30 7.24 -51.93 -0.38 0.92 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.10 1.56 6.10 -51.93 -0.32 1.24 16 35 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.60 8.08 -51.92 -0.42 0.18 16 LS Contribution 316.53 15.07 4.77 4.77 Total: -1.00 -29.58 316.53 -9.20 -38.78 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.91 Total: 7.60 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.15 Total: -9.43 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.41 Total: -38.59 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -2.39 Total: -5.89 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.58 -9.20 -38.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.335 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds