Wall clock time and date at job start Mon Mar 30 2020 00:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47214 * 2 1 4 4 C 1.50696 * 109.47272 * 120.00703 * 2 1 3 5 5 H 1.07999 * 120.00333 * 119.99745 * 4 2 1 6 6 C 1.37885 * 119.99789 * 299.99861 * 4 2 1 7 7 N 1.31516 * 119.99501 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99992 * 179.72567 * 6 4 2 9 9 H 1.48500 * 109.47307 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47218 * 120.00207 * 8 6 4 11 11 H 1.48503 * 109.47128 * 240.00178 * 8 6 4 12 12 N 1.46509 * 109.47369 * 240.00503 * 2 1 3 13 13 C 1.34778 * 119.99886 * 84.99389 * 12 2 1 14 14 O 1.21280 * 119.99990 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99720 * 179.97438 * 13 12 2 16 16 H 1.08991 * 115.55080 * 307.87775 * 15 13 12 17 17 C 1.52981 * 117.48902 * 162.19869 * 15 13 12 18 18 C 1.53095 * 117.48942 * 93.53147 * 15 13 12 19 19 C 1.52927 * 117.37142 * 0.22997 * 18 15 13 20 20 C 1.53077 * 109.68716 * 279.49794 * 19 18 15 21 21 S 1.81630 * 109.05430 * 299.82352 * 20 19 18 22 22 C 1.81618 * 102.50750 * 55.76361 * 21 20 19 23 23 C 1.52933 * 117.36991 * 214.77370 * 18 15 13 24 24 H 1.08998 * 109.47330 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47093 * 299.99505 * 1 2 3 26 26 H 1.09008 * 109.47099 * 59.99775 * 1 2 3 27 27 H 0.97003 * 119.99642 * 179.97438 * 7 6 4 28 28 H 0.96997 * 120.00025 * 265.00471 * 12 2 1 29 29 H 1.08991 * 117.50083 * 359.97438 * 17 15 13 30 30 H 1.09000 * 117.49692 * 145.00990 * 17 15 13 31 31 H 1.09004 * 109.43698 * 39.56565 * 19 18 15 32 32 H 1.09002 * 109.44095 * 159.42614 * 19 18 15 33 33 H 1.08998 * 109.53820 * 179.97438 * 20 19 18 34 34 H 1.08999 * 109.53777 * 59.69257 * 20 19 18 35 35 H 1.09004 * 109.54289 * 184.36071 * 22 21 20 36 36 H 1.09000 * 109.54524 * 64.10665 * 22 21 20 37 37 H 1.08999 * 109.43495 * 200.57207 * 23 18 15 38 38 H 1.09010 * 109.43363 * 320.47747 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9427 0.8294 2.6034 8 14 2.3156 -1.1247 4.0078 9 1 3.1357 -2.2949 3.6036 10 1 3.1433 -0.1960 4.8186 11 1 1.1572 -1.5874 4.8137 12 7 2.0184 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8589 1.1588 -2.4115 15 6 2.6500 -0.7283 -3.5876 16 1 3.5855 -1.2740 -3.4659 17 6 2.3895 -0.0655 -4.9415 18 6 1.6060 -1.3183 -4.5393 19 6 0.1337 -1.1355 -4.1686 20 6 -0.2681 -2.1786 -3.1227 21 16 -0.0214 -3.8391 -3.8162 22 6 1.7280 -3.8060 -4.3032 23 6 1.9611 -2.6255 -5.2493 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.7081 1.1606 3.4844 28 1 2.2490 -1.6317 -1.1528 29 1 1.8540 0.8838 -4.9425 30 1 3.1537 -0.1753 -5.7109 31 1 -0.0162 -0.1361 -3.7602 32 1 -0.4827 -1.2587 -5.0591 33 1 -1.3176 -2.0459 -2.8600 34 1 0.3501 -2.0596 -2.2330 35 1 1.9827 -4.7361 -4.8113 36 1 2.3513 -3.6911 -3.4164 37 1 1.3340 -2.7399 -6.1335 38 1 3.0091 -2.6027 -5.5484 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565695118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:24 Heat of formation + Delta-G solvation = -47.758641 kcal Electronic energy + Delta-G solvation = -19375.285469 eV Core-core repulsion = 16536.119117 eV Total energy + Delta-G solvation = -2839.166352 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.33852 -38.88996 -36.71140 -34.32270 -33.36812 -32.63823 -30.95273 -27.39079 -26.38762 -24.77179 -24.19211 -22.50579 -21.25260 -20.20433 -18.75493 -17.70149 -17.67029 -17.12046 -16.19130 -16.03120 -15.58029 -15.22285 -15.02298 -14.66646 -14.58414 -14.41399 -13.83525 -13.72398 -13.63329 -13.23629 -13.03993 -12.90027 -12.81498 -12.75603 -12.33494 -12.26959 -12.15871 -11.50932 -11.32485 -11.11404 -11.02783 -10.69125 -10.58727 -10.53077 -9.75502 -8.62616 -8.20465 -6.37923 0.85982 1.41882 1.42980 1.54836 1.63031 1.68124 2.31705 2.52990 2.71670 3.10186 3.59671 3.62694 3.71719 3.79885 4.01391 4.17406 4.24116 4.38755 4.46251 4.53424 4.71016 4.74075 4.81035 4.86355 4.88754 4.94536 4.98638 5.05470 5.10054 5.19567 5.26913 5.40999 5.58788 5.65567 5.87515 6.07665 6.70237 6.94287 7.29919 7.53478 8.86003 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022848 B = 0.005749 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.200813 B = 4869.135884 C = 5358.880121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.273 3.727 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.072 0.928 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.971 3.029 9 H -0.260 1.260 10 H -0.283 1.283 11 H -0.279 1.279 12 N -0.699 5.699 13 C 0.529 3.471 14 O -0.602 6.602 15 C -0.191 4.191 16 H 0.149 0.851 17 C -0.126 4.126 18 C -0.099 4.099 19 C -0.084 4.084 20 C -0.080 4.080 21 S -0.290 6.290 22 C -0.075 4.075 23 C -0.072 4.072 24 H 0.038 0.962 25 H 0.064 0.936 26 H 0.010 0.990 27 H 0.265 0.735 28 H 0.401 0.599 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.791 -10.382 -16.137 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.170 3.830 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.090 0.910 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.795 3.205 9 H -0.184 1.184 10 H -0.209 1.209 11 H -0.204 1.204 12 N -0.347 5.347 13 C 0.316 3.684 14 O -0.484 6.484 15 C -0.212 4.212 16 H 0.167 0.833 17 C -0.163 4.163 18 C -0.099 4.099 19 C -0.123 4.123 20 C -0.228 4.228 21 S -0.064 6.064 22 C -0.223 4.223 23 C -0.111 4.111 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.235 0.765 29 H 0.101 0.899 30 H 0.156 0.844 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.147 0.853 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.758 -10.294 -16.088 19.180 hybrid contribution 0.851 0.898 1.620 2.039 sum 2.609 -9.396 -14.467 17.447 Atomic orbital electron populations 1.21847 0.98231 0.99206 0.99365 1.18298 0.91072 0.91684 0.81942 0.98692 1.21569 1.32544 1.13462 0.90867 0.91024 1.25789 0.94843 0.95554 1.02309 1.70060 1.36963 1.24003 1.24557 0.85316 0.78127 0.78569 0.78465 1.18371 1.20870 1.20426 1.46264 1.64907 1.13794 1.09697 1.20320 0.76787 0.86388 0.84855 1.90626 1.53404 1.18422 1.85934 1.22490 1.02815 1.06377 0.89472 0.83325 1.23182 1.02418 0.95745 0.94924 1.21718 0.91311 0.96669 1.00250 1.21275 0.94726 0.97443 0.98896 1.23377 1.05114 0.93642 1.00662 1.86734 1.17932 1.21019 1.80722 1.23507 0.92461 1.03368 1.02934 1.21337 1.04171 0.88375 0.97181 0.94264 0.91688 0.97084 0.92541 0.76480 0.89898 0.84394 0.93354 0.88686 0.88668 0.90549 0.85322 0.89732 0.88750 0.87596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 9.26 71.98 0.67 -5.82 16 2 C 0.27 14.22 2.56 44.24 0.11 14.33 16 3 H 0.00 -0.30 7.58 -2.39 -0.02 -0.32 16 4 C -0.55 -29.05 8.73 25.60 0.22 -28.82 16 5 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 6 C 0.02 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -52.97 11.32 21.45 0.24 -52.73 16 8 Si 0.97 42.24 29.54 68.60 2.03 44.26 16 9 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 N -0.70 -28.82 3.87 -446.09 -1.73 -30.55 16 13 C 0.53 20.80 5.68 87.66 0.50 21.30 16 14 O -0.60 -29.57 15.96 -3.03 -0.05 -29.62 16 15 C -0.19 -5.02 5.90 -11.51 -0.07 -5.09 16 16 H 0.15 3.09 8.14 -2.39 -0.02 3.07 16 17 C -0.13 -2.79 9.39 30.63 0.29 -2.50 16 18 C -0.10 -2.11 1.76 -52.15 -0.09 -2.20 16 19 C -0.08 -2.19 4.89 30.60 0.15 -2.04 16 20 C -0.08 -2.21 6.42 72.01 0.46 -1.75 16 21 S -0.29 -6.84 22.25 -56.49 -1.26 -8.10 16 22 C -0.07 -1.22 6.47 72.00 0.47 -0.75 16 23 C -0.07 -1.02 5.46 30.59 0.17 -0.85 16 24 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.06 3.64 6.07 -2.39 -0.01 3.63 16 26 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.40 14.32 8.26 -92.71 -0.77 13.55 16 29 H 0.08 2.30 7.78 -2.39 -0.02 2.28 16 30 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 1.59 7.24 -2.38 -0.02 1.57 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.08 2.43 6.10 -2.39 -0.01 2.42 16 35 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.11 0.99 8.08 -2.38 -0.02 0.97 16 Total: -1.00 -67.56 316.53 2.84 -64.72 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.28 Total: 24.95 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 3.32 Total: -12.94 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -1.48 Total: -83.28 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.05 Total: -29.62 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: -6.84 SS G_CDS: -1.26 Total: -8.10 kcal Total: -67.56 2.84 -64.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.960 kcal (2) G-P(sol) polarization free energy of solvation -67.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds