Wall clock time and date at job start Mon Mar 30 2020 00:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35356 * 117.00122 * 2 1 4 4 N 1.30545 * 125.44620 * 179.97438 * 3 2 1 5 5 C 1.36334 * 108.38147 * 180.02562 * 4 3 2 6 6 C 1.47365 * 126.41165 * 179.97438 * 5 4 3 7 7 O 1.21622 * 120.00082 * 173.53453 * 6 5 4 8 8 N 1.34784 * 120.00289 * 353.53233 * 6 5 4 9 9 C 1.46496 * 119.99612 * 3.41945 * 8 6 5 10 10 C 1.46494 * 119.99961 * 183.41449 * 8 6 5 11 11 C 1.53004 * 109.46974 * 90.00307 * 10 8 6 12 12 N 1.46502 * 109.46864 * 179.97438 * 11 10 8 13 13 C 1.36945 * 119.99805 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99633 * 359.97438 * 13 12 11 15 15 C 1.38809 * 119.99695 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00348 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99595 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46674 * 90.00422 * 17 15 13 19 19 H 1.48504 * 109.47189 * 210.00124 * 17 15 13 20 20 H 1.48501 * 109.47318 * 330.00307 * 17 15 13 21 21 C 1.35910 * 107.17575 * 0.02562 * 5 4 3 22 22 O 1.34204 * 125.44505 * 0.02562 * 3 2 1 23 23 H 1.08997 * 109.46972 * 60.00108 * 1 2 3 24 24 H 1.08997 * 109.46861 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47304 * 299.99773 * 1 2 3 26 26 H 1.08996 * 109.47306 * 84.10535 * 9 8 6 27 27 H 1.09004 * 109.46990 * 204.10902 * 9 8 6 28 28 H 1.08998 * 109.47403 * 324.10159 * 9 8 6 29 29 H 1.09004 * 109.47330 * 209.99954 * 10 8 6 30 30 H 1.09005 * 109.47727 * 330.00120 * 10 8 6 31 31 H 1.08995 * 109.46959 * 299.99742 * 11 10 8 32 32 H 1.08997 * 109.47279 * 60.00009 * 11 10 8 33 33 H 0.96997 * 120.00459 * 0.02562 * 12 11 10 34 34 H 0.97006 * 120.00047 * 179.97438 * 16 15 13 35 35 H 1.07998 * 126.45923 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 0.0005 5 6 3.5700 2.7406 0.0009 6 6 4.8892 3.3976 0.0020 7 8 4.9670 4.6055 -0.1163 8 7 6.0094 2.6599 0.1342 9 6 5.9207 1.1992 0.2015 10 6 7.3156 3.3188 0.2105 11 6 7.6493 3.6217 1.6727 12 7 8.9558 4.2800 1.7490 13 6 9.4672 4.6479 2.9650 14 1 8.9070 4.4529 3.8676 15 6 10.7053 5.2712 3.0374 16 7 11.3877 5.5092 1.9373 17 14 11.4025 5.7736 4.6961 18 1 12.2092 4.6577 5.2523 19 1 12.2639 6.9716 4.5287 20 1 10.2887 6.0906 5.6257 21 6 2.3603 3.3600 0.0012 22 8 1.4227 2.3958 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 5.8795 0.7907 -0.8082 27 1 6.7965 0.8054 0.7173 28 1 5.0202 0.9145 0.7456 29 1 8.0787 2.6624 -0.2078 30 1 7.2867 4.2496 -0.3559 31 1 6.8863 4.2780 2.0911 32 1 7.6783 2.6909 2.2391 33 1 9.4587 4.4554 0.9384 34 1 12.2528 5.9451 1.9879 35 1 2.1849 4.4257 0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567538045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:31 Heat of formation + Delta-G solvation = -9.107980 kcal Electronic energy + Delta-G solvation = -20054.848161 eV Core-core repulsion = 16671.064614 eV Total energy + Delta-G solvation = -3383.783548 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.71536 -39.65536 -39.08202 -35.89927 -35.27925 -34.13836 -31.35612 -30.35304 -28.22954 -27.85930 -26.43041 -24.62554 -23.16773 -22.60527 -21.39407 -20.11958 -18.46139 -17.82593 -17.32462 -17.01623 -16.69338 -15.80030 -15.62858 -15.56558 -15.11517 -14.42348 -13.96627 -13.60588 -13.32866 -13.22731 -12.78018 -12.76197 -12.70224 -12.43901 -12.28440 -11.39542 -11.14697 -10.95151 -10.86830 -10.64639 -10.49590 -10.10234 -9.98441 -9.67667 -8.99046 -8.82304 -8.37913 -6.87981 -5.71208 -3.00265 0.91738 1.60603 1.83930 2.44322 3.05854 3.30622 3.48128 3.52860 3.55207 4.19020 4.43159 4.51804 4.64290 4.67210 4.78929 4.96687 5.22068 5.39607 5.47455 5.58248 5.69590 5.74004 5.94973 6.08261 6.12046 6.20650 6.40308 6.63599 6.79970 6.96330 7.22884 7.53713 7.75329 8.21813 8.47424 9.58263 10.14661 10.50052 11.51804 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.040888 B = 0.003245 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.626174 B = 8627.225046 C = 8665.435492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.245 6.245 3 C 0.374 3.626 4 N -0.449 5.449 5 C -0.039 4.039 6 C 0.595 3.405 7 O -0.529 6.529 8 N -0.591 5.591 9 C 0.074 3.926 10 C 0.106 3.894 11 C 0.143 3.857 12 N -0.730 5.730 13 C -0.237 4.237 14 H 0.070 0.930 15 C -0.015 4.015 16 N -0.934 5.934 17 Si 0.909 3.091 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.001 3.999 22 O -0.227 6.227 23 H 0.067 0.933 24 H 0.118 0.882 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.023 0.977 32 H 0.020 0.980 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.040 -11.846 -6.382 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.153 6.153 3 C 0.129 3.871 4 N -0.196 5.196 5 C -0.157 4.157 6 C 0.381 3.619 7 O -0.406 6.406 8 N -0.322 5.322 9 C -0.069 4.069 10 C -0.016 4.016 11 C 0.014 3.986 12 N -0.375 5.375 13 C -0.368 4.368 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.583 5.583 17 Si 0.740 3.260 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.208 1.208 21 C -0.071 4.071 22 O -0.118 6.118 23 H 0.086 0.914 24 H 0.137 0.863 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.041 0.959 32 H 0.038 0.962 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -23.533 -11.923 -6.271 27.116 hybrid contribution -0.168 0.750 0.664 1.015 sum -23.701 -11.173 -5.607 26.796 Atomic orbital electron populations 1.23295 0.75192 1.05613 1.03006 1.86383 1.23606 1.16000 1.89291 1.23682 0.85914 0.79499 0.98017 1.71443 1.08767 1.15619 1.23756 1.21763 0.95982 0.88188 1.09784 1.16736 0.81868 0.85801 0.77478 1.90866 1.86149 1.12943 1.50648 1.47614 1.06280 1.07875 1.70477 1.22206 1.04116 0.78250 1.02332 1.21803 0.81822 0.98700 0.99268 1.20916 0.89281 0.95664 0.92731 1.42212 1.17126 1.71160 1.07016 1.19216 1.00236 1.31502 0.85845 0.91187 1.24747 0.97498 1.01701 0.97105 1.69664 1.14502 1.48250 1.25850 0.86159 0.78751 0.77780 0.83330 1.21724 1.21739 1.20756 1.24966 0.84826 0.93764 1.03501 1.84375 1.39624 1.15895 1.71898 0.91438 0.86336 0.91394 0.92700 0.91238 0.88255 0.90075 0.89434 0.95946 0.96232 0.78222 0.93503 0.74706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 10.73 101.05 1.08 1.18 16 2 O -0.25 -2.12 10.55 -40.99 -0.43 -2.55 16 3 C 0.37 4.04 8.98 52.22 0.47 4.51 16 4 N -0.45 -5.82 7.89 -11.72 -0.09 -5.91 16 5 C -0.04 -0.52 6.66 -82.99 -0.55 -1.08 16 6 C 0.60 9.92 7.67 -12.54 -0.10 9.82 16 7 O -0.53 -10.31 16.45 5.26 0.09 -10.22 16 8 N -0.59 -9.59 2.87 -182.87 -0.53 -10.12 16 9 C 0.07 0.98 9.61 59.84 0.57 1.55 16 10 C 0.11 1.95 5.52 -4.04 -0.02 1.92 16 11 C 0.14 3.15 6.58 -4.04 -0.03 3.12 16 12 N -0.73 -19.58 5.60 -59.91 -0.34 -19.91 16 13 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 14 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 15 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 16 N -0.93 -29.03 13.06 55.49 0.72 -28.30 16 17 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 C 0.00 0.02 11.94 29.90 0.36 0.37 16 22 O -0.23 -2.20 10.20 -17.76 -0.18 -2.38 16 23 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.12 0.17 8.14 -51.93 -0.42 -0.26 16 25 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.87 8.03 -51.93 -0.42 0.46 16 28 H 0.10 1.32 5.30 -51.93 -0.28 1.05 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.09 1.72 7.38 -51.93 -0.38 1.34 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 10.63 7.67 -40.82 -0.31 10.32 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.24 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 310.17 15.07 4.67 4.67 Total: -1.00 -35.40 310.17 -3.88 -39.28 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.31 Total: 3.64 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 1.54 Total: 13.78 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.23 Total: -64.24 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.53 Total: -15.15 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.40 -3.88 -39.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567538045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.172 kcal (2) G-P(sol) polarization free energy of solvation -35.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds