Wall clock time and date at job start Mon Mar 30 2020 00:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35356 * 117.00122 * 2 1 4 4 N 1.30545 * 125.44620 * 179.97438 * 3 2 1 5 5 C 1.36334 * 108.38147 * 180.02562 * 4 3 2 6 6 C 1.47365 * 126.41165 * 179.97438 * 5 4 3 7 7 O 1.21622 * 120.00082 * 173.53453 * 6 5 4 8 8 N 1.34784 * 120.00289 * 353.53233 * 6 5 4 9 9 C 1.46496 * 119.99612 * 3.41945 * 8 6 5 10 10 C 1.46494 * 119.99961 * 183.41449 * 8 6 5 11 11 C 1.53004 * 109.46974 * 90.00307 * 10 8 6 12 12 N 1.46502 * 109.46864 * 179.97438 * 11 10 8 13 13 C 1.36945 * 119.99805 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99633 * 359.97438 * 13 12 11 15 15 C 1.38809 * 119.99695 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00348 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99595 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46674 * 90.00422 * 17 15 13 19 19 H 1.48504 * 109.47189 * 210.00124 * 17 15 13 20 20 H 1.48501 * 109.47318 * 330.00307 * 17 15 13 21 21 C 1.35910 * 107.17575 * 0.02562 * 5 4 3 22 22 O 1.34204 * 125.44505 * 0.02562 * 3 2 1 23 23 H 1.08997 * 109.46972 * 60.00108 * 1 2 3 24 24 H 1.08997 * 109.46861 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47304 * 299.99773 * 1 2 3 26 26 H 1.08996 * 109.47306 * 84.10535 * 9 8 6 27 27 H 1.09004 * 109.46990 * 204.10902 * 9 8 6 28 28 H 1.08998 * 109.47403 * 324.10159 * 9 8 6 29 29 H 1.09004 * 109.47330 * 209.99954 * 10 8 6 30 30 H 1.09005 * 109.47727 * 330.00120 * 10 8 6 31 31 H 1.08995 * 109.46959 * 299.99742 * 11 10 8 32 32 H 1.08997 * 109.47279 * 60.00009 * 11 10 8 33 33 H 0.96997 * 120.00459 * 0.02562 * 12 11 10 34 34 H 0.97006 * 120.00047 * 179.97438 * 16 15 13 35 35 H 1.07998 * 126.45923 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 0.0005 5 6 3.5700 2.7406 0.0009 6 6 4.8892 3.3976 0.0020 7 8 4.9670 4.6055 -0.1163 8 7 6.0094 2.6599 0.1342 9 6 5.9207 1.1992 0.2015 10 6 7.3156 3.3188 0.2105 11 6 7.6493 3.6217 1.6727 12 7 8.9558 4.2800 1.7490 13 6 9.4672 4.6479 2.9650 14 1 8.9070 4.4529 3.8676 15 6 10.7053 5.2712 3.0374 16 7 11.3877 5.5092 1.9373 17 14 11.4025 5.7736 4.6961 18 1 12.2092 4.6577 5.2523 19 1 12.2639 6.9716 4.5287 20 1 10.2887 6.0906 5.6257 21 6 2.3603 3.3600 0.0012 22 8 1.4227 2.3958 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 5.8795 0.7907 -0.8082 27 1 6.7965 0.8054 0.7173 28 1 5.0202 0.9145 0.7456 29 1 8.0787 2.6624 -0.2078 30 1 7.2867 4.2496 -0.3559 31 1 6.8863 4.2780 2.0911 32 1 7.6783 2.6909 2.2391 33 1 9.4587 4.4554 0.9384 34 1 12.2528 5.9451 1.9879 35 1 2.1849 4.4257 0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567538045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:30 Heat of formation + Delta-G solvation = -37.378424 kcal Electronic energy + Delta-G solvation = -20056.074060 eV Core-core repulsion = 16671.064614 eV Total energy + Delta-G solvation = -3385.009446 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.56687 -40.89866 -39.75227 -37.45607 -36.40796 -35.77595 -33.36068 -31.28958 -29.91600 -28.30365 -27.61763 -26.28501 -24.61503 -23.63984 -22.89951 -21.18256 -19.49968 -19.19042 -18.60103 -18.31888 -17.44895 -17.23061 -16.72943 -16.37523 -16.31360 -15.95472 -15.40959 -15.19934 -15.06463 -14.59675 -14.33222 -13.96097 -13.49000 -13.09556 -13.07533 -12.96480 -12.86999 -12.75044 -12.36222 -12.13621 -12.07342 -11.88224 -11.60672 -11.20274 -10.97906 -9.95458 -9.61011 -9.06939 -7.97429 -5.28527 0.00123 0.87376 0.90488 1.46780 1.49792 1.58137 1.64222 1.91452 2.13781 2.56083 3.19505 3.35798 3.74221 3.98060 4.04747 4.15274 4.22079 4.22215 4.27157 4.38935 4.44563 4.55228 4.58626 4.67621 4.79627 4.97821 5.06383 5.16165 5.42443 5.50635 5.65537 6.20103 6.24051 6.45172 6.95306 7.30183 8.00947 8.27384 9.26005 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.040888 B = 0.003245 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.626174 B = 8627.225046 C = 8665.435492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.254 6.254 3 C 0.381 3.619 4 N -0.473 5.473 5 C -0.072 4.072 6 C 0.592 3.408 7 O -0.568 6.568 8 N -0.594 5.594 9 C 0.077 3.923 10 C 0.121 3.879 11 C 0.149 3.851 12 N -0.742 5.742 13 C -0.252 4.252 14 H 0.073 0.927 15 C -0.073 4.073 16 N -0.968 5.968 17 Si 0.979 3.021 18 H -0.282 1.282 19 H -0.292 1.292 20 H -0.271 1.271 21 C 0.031 3.969 22 O -0.214 6.214 23 H 0.076 0.924 24 H 0.146 0.854 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.004 0.996 32 H 0.028 0.972 33 H 0.377 0.623 34 H 0.254 0.746 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.735 -12.878 -5.813 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.161 6.161 3 C 0.135 3.865 4 N -0.219 5.219 5 C -0.189 4.189 6 C 0.380 3.620 7 O -0.448 6.448 8 N -0.324 5.324 9 C -0.065 4.065 10 C -0.002 4.002 11 C 0.022 3.978 12 N -0.386 5.386 13 C -0.383 4.383 14 H 0.091 0.909 15 C -0.266 4.266 16 N -0.618 5.618 17 Si 0.807 3.193 18 H -0.209 1.209 19 H -0.218 1.218 20 H -0.196 1.196 21 C -0.042 4.042 22 O -0.105 6.105 23 H 0.095 0.905 24 H 0.164 0.836 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.022 0.978 32 H 0.046 0.954 33 H 0.209 0.791 34 H 0.063 0.937 35 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -25.278 -13.016 -5.697 28.997 hybrid contribution 0.188 0.990 0.462 1.108 sum -25.090 -12.026 -5.235 28.312 Atomic orbital electron populations 1.23702 0.72670 1.07769 1.03865 1.86422 1.26086 1.14753 1.88887 1.23741 0.85706 0.80252 0.96767 1.71291 1.10200 1.15280 1.25165 1.21346 0.95250 0.89004 1.13306 1.17135 0.82951 0.85483 0.76398 1.90832 1.86918 1.14549 1.52456 1.47680 1.05416 1.09009 1.70319 1.22312 1.04553 0.76342 1.03252 1.21470 0.83607 0.98720 0.96434 1.20936 0.86700 0.94855 0.95339 1.42379 1.18539 1.71550 1.06106 1.19594 1.00577 1.31327 0.86817 0.90884 1.25637 0.97934 1.02050 1.00933 1.69820 1.14766 1.49162 1.28056 0.85067 0.78017 0.77241 0.78959 1.20868 1.21847 1.19611 1.25468 0.83911 0.94733 1.00074 1.84423 1.38990 1.15578 1.71519 0.90493 0.83600 0.90606 0.91504 0.90534 0.88016 0.88366 0.91162 0.97803 0.95404 0.79120 0.93735 0.72092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 10.73 113.37 1.22 1.29 16 2 O -0.25 -3.85 10.55 -64.25 -0.68 -4.52 16 3 C 0.38 7.53 8.98 130.43 1.17 8.70 16 4 N -0.47 -11.68 7.89 -419.40 -3.31 -14.99 16 5 C -0.07 -1.89 6.66 40.31 0.27 -1.62 16 6 C 0.59 19.82 7.67 86.64 0.66 20.49 16 7 O -0.57 -22.56 16.45 -4.10 -0.07 -22.62 16 8 N -0.59 -19.21 2.87 -850.72 -2.44 -21.65 16 9 C 0.08 1.97 9.61 127.77 1.23 3.20 16 10 C 0.12 4.47 5.52 86.38 0.48 4.95 16 11 C 0.15 6.67 6.58 86.38 0.57 7.24 16 12 N -0.74 -40.38 5.60 -343.44 -1.92 -42.30 16 13 C -0.25 -14.81 9.99 84.03 0.84 -13.97 16 14 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 15 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 16 N -0.97 -60.76 13.06 21.65 0.28 -60.47 16 17 Si 0.98 47.34 29.55 68.60 2.03 49.37 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 C 0.03 0.60 11.94 67.28 0.80 1.40 16 22 O -0.21 -3.66 10.20 18.87 0.19 -3.47 16 23 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 24 H 0.15 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.83 8.03 -2.39 -0.02 1.81 16 28 H 0.10 2.62 5.30 -2.39 -0.01 2.61 16 29 H 0.10 3.28 8.07 -2.39 -0.02 3.26 16 30 H 0.07 2.85 7.38 -2.38 -0.02 2.83 16 31 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.38 21.32 7.67 -92.71 -0.71 20.61 16 34 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 35 H 0.26 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -76.21 310.17 2.19 -74.03 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.41 Total: 18.85 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: 7.70 Total: 27.79 kcal Atomic # 7 Polarization: -132.02 SS G_CDS: -7.40 Total: -139.42 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.55 Total: -30.62 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -76.21 2.19 -74.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567538045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.647 kcal (2) G-P(sol) polarization free energy of solvation -76.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds