Wall clock time and date at job start Mon Mar 30 2020 00:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40083 * 126.03812 * 2 1 4 4 C 1.30844 * 108.20198 * 179.97438 * 3 2 1 5 5 C 1.39866 * 108.20609 * 359.97438 * 4 3 2 6 6 C 1.34951 * 126.03463 * 180.02562 * 2 1 3 7 7 C 1.50702 * 126.12865 * 359.95073 * 6 2 1 8 8 H 1.09004 * 109.47376 * 295.03443 * 7 6 2 9 9 N 1.46897 * 109.47107 * 175.03177 * 7 6 2 10 10 C 1.46904 * 111.00016 * 155.00582 * 9 7 6 11 11 C 1.52998 * 109.47018 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47122 * 59.99752 * 11 10 9 13 13 O 1.42898 * 109.46889 * 299.99514 * 11 10 9 14 14 C 1.50703 * 109.46709 * 179.97438 * 11 10 9 15 15 H 1.08000 * 120.00070 * 359.97438 * 14 11 10 16 16 C 1.37877 * 119.99548 * 179.97438 * 14 11 10 17 17 N 1.31513 * 120.00384 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99922 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47303 * 59.99473 * 18 16 14 20 20 H 1.48500 * 109.47457 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46866 * 299.99903 * 18 16 14 22 22 C 1.50709 * 109.46724 * 55.03261 * 7 6 2 23 23 O 1.20827 * 119.99560 * 120.00220 * 22 7 6 24 24 O 1.34228 * 119.99850 * 299.99630 * 22 7 6 25 25 H 1.09005 * 109.46927 * 90.02517 * 1 2 3 26 26 H 1.08994 * 109.47314 * 210.02353 * 1 2 3 27 27 H 1.08998 * 109.46715 * 330.02835 * 1 2 3 28 28 H 1.08004 * 125.89422 * 179.97438 * 4 3 2 29 29 H 1.07993 * 126.04141 * 180.02562 * 5 4 3 30 30 H 1.00905 * 110.99938 * 278.95474 * 9 7 6 31 31 H 1.09000 * 109.46613 * 300.00191 * 10 9 7 32 32 H 1.08997 * 109.47139 * 59.99076 * 10 9 7 33 33 H 0.96702 * 113.99776 * 299.99950 * 13 11 10 34 34 H 0.97004 * 120.00275 * 180.02562 * 17 16 14 35 35 H 0.96703 * 116.99609 * 179.97438 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 0.0006 5 6 3.5438 -0.6666 0.0015 6 6 2.2589 -1.0913 -0.0005 7 6 1.7973 -2.5259 -0.0001 8 1 1.2727 -2.7385 0.9314 9 7 2.9607 -3.4146 -0.1208 10 6 2.6739 -4.7377 0.4497 11 6 3.9063 -5.6329 0.3063 12 1 4.7459 -5.1829 0.8362 13 8 4.2356 -5.7720 -1.0772 14 6 3.6123 -6.9899 0.8921 15 1 2.6434 -7.1933 1.3239 16 6 4.5802 -7.9717 0.8768 17 7 5.7597 -7.7242 0.3506 18 14 4.2155 -9.6541 1.6023 19 1 3.0713 -10.2669 0.8808 20 1 5.4117 -10.5230 1.4633 21 1 3.8738 -9.5095 3.0403 22 6 0.8674 -2.7546 -1.1638 23 8 1.1454 -3.5740 -2.0072 24 8 -0.2695 -2.0482 -1.2634 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 4.4055 1.3709 0.0003 29 1 4.4211 -1.2964 0.0025 30 1 3.2584 -3.4921 -1.0818 31 1 2.4231 -4.6315 1.5051 32 1 1.8340 -5.1873 -0.0798 33 1 3.5325 -6.1667 -1.6111 34 1 6.4406 -8.4151 0.3396 35 1 -0.8337 -2.2297 -2.0275 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574472540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:42 Heat of formation + Delta-G solvation = -51.526197 kcal Electronic energy + Delta-G solvation = -20921.436060 eV Core-core repulsion = 17535.813120 eV Total energy + Delta-G solvation = -3385.622940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.44527 -40.20143 -37.07131 -36.12941 -34.66523 -33.13384 -32.12138 -30.78752 -28.25865 -26.83086 -26.39408 -24.03594 -22.06463 -21.00571 -20.56826 -19.66594 -18.26011 -17.54948 -17.15539 -16.78093 -15.71523 -15.15386 -14.81962 -14.57307 -14.32596 -14.24065 -13.97334 -13.67892 -13.22391 -13.02063 -12.71189 -12.36792 -12.14937 -12.01949 -11.60751 -11.35942 -11.06030 -10.90759 -10.86049 -10.78691 -10.60284 -10.11685 -9.23707 -9.10333 -8.59338 -8.39946 -8.36000 -8.14166 -6.01577 -4.20487 1.75773 2.05794 2.53086 2.79333 3.06860 3.28425 3.34107 3.35211 4.17428 4.40870 4.48350 4.66269 4.95919 5.05786 5.23184 5.25712 5.26691 5.56737 5.76268 5.85423 5.99625 6.11527 6.25935 6.32244 6.37114 6.75539 6.79719 6.97235 7.15698 7.53729 7.66911 7.73648 7.77569 7.88484 8.16853 8.81839 9.37802 9.56815 11.02675 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.004572 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.787662 B = 6122.735198 C = 6567.514035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.368 5.368 3 N -0.299 5.299 4 C 0.038 3.962 5 C -0.227 4.227 6 C 0.080 3.920 7 C 0.165 3.835 8 H 0.126 0.874 9 N -0.642 5.642 10 C 0.029 3.971 11 C 0.235 3.765 12 H 0.067 0.933 13 O -0.564 6.564 14 C -0.575 4.575 15 H 0.054 0.946 16 C 0.081 3.919 17 N -0.856 5.856 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.446 3.554 23 O -0.495 6.495 24 O -0.518 6.518 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.184 0.816 29 H 0.160 0.840 30 H 0.364 0.636 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.344 0.656 34 H 0.262 0.738 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.169 13.860 -1.140 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.152 5.152 3 N -0.121 5.121 4 C -0.147 4.147 5 C -0.257 4.257 6 C -0.048 4.048 7 C 0.050 3.950 8 H 0.143 0.857 9 N -0.276 5.276 10 C -0.099 4.099 11 C 0.177 3.823 12 H 0.084 0.916 13 O -0.366 6.366 14 C -0.614 4.614 15 H 0.072 0.928 16 C -0.125 4.125 17 N -0.492 5.492 18 Si 0.717 3.283 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C 0.284 3.716 23 O -0.380 6.380 24 O -0.330 6.330 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.200 0.800 29 H 0.178 0.822 30 H 0.187 0.813 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.188 0.812 34 H 0.071 0.929 35 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -10.695 15.142 -0.321 18.541 hybrid contribution -1.246 -2.469 -0.886 2.904 sum -11.941 12.673 -1.207 17.454 Atomic orbital electron populations 1.21951 0.74090 1.03426 1.03672 1.48474 1.06589 1.02958 1.57179 1.77324 1.02045 1.07712 1.25015 1.23885 0.95108 0.95300 1.00420 1.21386 0.96883 0.94327 1.13056 1.20379 0.91864 0.88109 1.04398 1.19812 0.89903 0.90229 0.95085 0.85688 1.60764 1.26397 1.13384 1.27043 1.23101 1.01349 0.86924 0.98564 1.19380 0.90660 0.91548 0.80668 0.91563 1.86577 1.44671 1.84116 1.21223 1.21540 0.99713 0.97901 1.42203 0.92755 1.25011 0.94780 0.98634 0.94121 1.70066 1.03798 1.33556 1.41736 0.86723 0.77786 0.84028 0.79722 1.20225 1.21152 1.20139 1.25095 0.80726 0.77744 0.88045 1.90776 1.73662 1.32889 1.40697 1.84882 1.34013 1.62499 1.51590 0.90177 0.89147 0.90280 0.79958 0.82198 0.81326 0.91126 0.95380 0.81204 0.92864 0.73933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.99 9.31 59.85 0.56 1.55 16 2 N -0.37 -4.77 4.01 -63.88 -0.26 -5.02 16 3 N -0.30 -4.23 12.58 30.63 0.39 -3.84 16 4 C 0.04 0.49 12.03 -17.36 -0.21 0.28 16 5 C -0.23 -3.25 10.10 -40.01 -0.40 -3.65 16 6 C 0.08 1.12 6.25 -82.26 -0.51 0.60 16 7 C 0.17 2.28 2.59 -70.01 -0.18 2.10 16 8 H 0.13 1.55 7.80 -51.93 -0.40 1.14 16 9 N -0.64 -10.91 5.31 -109.18 -0.58 -11.49 16 10 C 0.03 0.57 5.02 -3.82 -0.02 0.55 16 11 C 0.24 5.80 3.10 -27.88 -0.09 5.71 16 12 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 13 O -0.56 -14.28 12.07 -35.23 -0.43 -14.71 16 14 C -0.58 -15.48 8.76 -34.44 -0.30 -15.78 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 16 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 17 N -0.86 -25.10 12.84 55.43 0.71 -24.39 16 18 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.45 5.90 7.44 36.01 0.27 6.17 16 23 O -0.49 -8.30 16.06 -18.75 -0.30 -8.60 16 24 O -0.52 -4.54 8.25 -39.25 -0.32 -4.86 16 25 H 0.08 0.64 6.75 -51.93 -0.35 0.29 16 26 H 0.09 0.71 6.68 -51.93 -0.35 0.36 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.18 1.75 8.06 -52.48 -0.42 1.33 16 29 H 0.16 2.33 7.79 -52.49 -0.41 1.92 16 30 H 0.36 6.72 7.14 -39.29 -0.28 6.44 16 31 H 0.07 1.32 8.06 -51.93 -0.42 0.90 16 32 H 0.03 0.55 7.62 -51.93 -0.40 0.16 16 33 H 0.34 8.02 9.04 45.56 0.41 8.43 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.40 2.03 9.10 45.56 0.41 2.44 16 LS Contribution 302.36 15.07 4.56 4.56 Total: -1.00 -33.27 302.36 -4.83 -38.10 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -2.59 Total: 14.67 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -0.99 Total: -0.32 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.26 Total: -44.74 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -1.05 Total: -28.17 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.27 -4.83 -38.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574472540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.429 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds