Wall clock time and date at job start Mon Mar 30 2020 00:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40083 * 126.03812 * 2 1 4 4 C 1.30844 * 108.20198 * 179.97438 * 3 2 1 5 5 C 1.39866 * 108.20609 * 359.97438 * 4 3 2 6 6 C 1.34951 * 126.03463 * 180.02562 * 2 1 3 7 7 C 1.50702 * 126.12865 * 359.95073 * 6 2 1 8 8 H 1.09004 * 109.47376 * 295.03443 * 7 6 2 9 9 N 1.46897 * 109.47107 * 175.03177 * 7 6 2 10 10 C 1.46904 * 111.00016 * 155.00582 * 9 7 6 11 11 C 1.52998 * 109.47018 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47122 * 59.99752 * 11 10 9 13 13 O 1.42898 * 109.46889 * 299.99514 * 11 10 9 14 14 C 1.50703 * 109.46709 * 179.97438 * 11 10 9 15 15 H 1.08000 * 120.00070 * 359.97438 * 14 11 10 16 16 C 1.37877 * 119.99548 * 179.97438 * 14 11 10 17 17 N 1.31513 * 120.00384 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99922 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47303 * 59.99473 * 18 16 14 20 20 H 1.48500 * 109.47457 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46866 * 299.99903 * 18 16 14 22 22 C 1.50709 * 109.46724 * 55.03261 * 7 6 2 23 23 O 1.20827 * 119.99560 * 120.00220 * 22 7 6 24 24 O 1.34228 * 119.99850 * 299.99630 * 22 7 6 25 25 H 1.09005 * 109.46927 * 90.02517 * 1 2 3 26 26 H 1.08994 * 109.47314 * 210.02353 * 1 2 3 27 27 H 1.08998 * 109.46715 * 330.02835 * 1 2 3 28 28 H 1.08004 * 125.89422 * 179.97438 * 4 3 2 29 29 H 1.07993 * 126.04141 * 180.02562 * 5 4 3 30 30 H 1.00905 * 110.99938 * 278.95474 * 9 7 6 31 31 H 1.09000 * 109.46613 * 300.00191 * 10 9 7 32 32 H 1.08997 * 109.47139 * 59.99076 * 10 9 7 33 33 H 0.96702 * 113.99776 * 299.99950 * 13 11 10 34 34 H 0.97004 * 120.00275 * 180.02562 * 17 16 14 35 35 H 0.96703 * 116.99609 * 179.97438 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 0.0006 5 6 3.5438 -0.6666 0.0015 6 6 2.2589 -1.0913 -0.0005 7 6 1.7973 -2.5259 -0.0001 8 1 1.2727 -2.7385 0.9314 9 7 2.9607 -3.4146 -0.1208 10 6 2.6739 -4.7377 0.4497 11 6 3.9063 -5.6329 0.3063 12 1 4.7459 -5.1829 0.8362 13 8 4.2356 -5.7720 -1.0772 14 6 3.6123 -6.9899 0.8921 15 1 2.6434 -7.1933 1.3239 16 6 4.5802 -7.9717 0.8768 17 7 5.7597 -7.7242 0.3506 18 14 4.2155 -9.6541 1.6023 19 1 3.0713 -10.2669 0.8808 20 1 5.4117 -10.5230 1.4633 21 1 3.8738 -9.5095 3.0403 22 6 0.8674 -2.7546 -1.1638 23 8 1.1454 -3.5740 -2.0072 24 8 -0.2695 -2.0482 -1.2634 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 4.4055 1.3709 0.0003 29 1 4.4211 -1.2964 0.0025 30 1 3.2584 -3.4921 -1.0818 31 1 2.4231 -4.6315 1.5051 32 1 1.8340 -5.1873 -0.0798 33 1 3.5325 -6.1667 -1.6111 34 1 6.4406 -8.4151 0.3396 35 1 -0.8337 -2.2297 -2.0275 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574472540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:42 Heat of formation + Delta-G solvation = -79.653677 kcal Electronic energy + Delta-G solvation = -20922.655759 eV Core-core repulsion = 17535.813120 eV Total energy + Delta-G solvation = -3386.842639 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.47532 -41.23855 -38.52290 -37.34251 -36.17307 -34.22997 -34.06405 -32.11679 -29.81406 -28.08420 -27.43958 -25.73948 -23.17348 -22.51237 -21.82730 -20.69547 -19.29187 -18.99608 -18.55614 -18.09683 -16.82542 -16.62030 -16.29847 -16.04214 -15.92396 -15.63401 -15.16802 -14.81966 -14.47520 -14.41675 -13.93805 -13.63752 -13.24199 -13.13304 -12.97919 -12.89020 -12.75098 -12.64057 -12.54451 -12.05789 -11.94392 -11.65953 -11.05848 -10.68385 -10.23062 -10.18963 -9.68126 -9.43034 -8.11155 -6.37068 0.71970 1.01672 1.43096 1.44570 1.52589 1.60479 1.80211 2.06557 2.40361 2.96993 3.15624 3.39368 3.78946 3.88935 4.13676 4.28886 4.42663 4.44998 4.53465 4.55877 4.80278 4.84417 4.89878 5.03826 5.28173 5.42047 5.62738 5.65047 5.78692 5.84511 6.01576 6.10083 6.23696 6.72556 6.74868 6.81596 7.35021 7.54556 8.93400 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029692 B = 0.004572 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.787662 B = 6122.735198 C = 6567.514035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.366 5.366 3 N -0.318 5.318 4 C 0.038 3.962 5 C -0.250 4.250 6 C 0.076 3.924 7 C 0.167 3.833 8 H 0.145 0.855 9 N -0.646 5.646 10 C 0.052 3.948 11 C 0.233 3.767 12 H 0.031 0.969 13 O -0.577 6.577 14 C -0.588 4.588 15 H 0.062 0.938 16 C 0.027 3.973 17 N -0.898 5.898 18 Si 0.960 3.040 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.266 1.266 22 C 0.457 3.543 23 O -0.534 6.534 24 O -0.496 6.496 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.210 0.790 29 H 0.149 0.851 30 H 0.354 0.646 31 H 0.081 0.919 32 H 0.028 0.972 33 H 0.352 0.648 34 H 0.261 0.739 35 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.282 14.266 -0.640 19.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.149 5.149 3 N -0.141 5.141 4 C -0.146 4.146 5 C -0.279 4.279 6 C -0.052 4.052 7 C 0.052 3.948 8 H 0.162 0.838 9 N -0.279 5.279 10 C -0.077 4.077 11 C 0.176 3.824 12 H 0.048 0.952 13 O -0.381 6.381 14 C -0.626 4.626 15 H 0.080 0.920 16 C -0.176 4.176 17 N -0.535 5.535 18 Si 0.784 3.216 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.191 1.191 22 C 0.297 3.703 23 O -0.423 6.423 24 O -0.309 6.309 25 H 0.111 0.889 26 H 0.123 0.877 27 H 0.110 0.890 28 H 0.227 0.773 29 H 0.167 0.833 30 H 0.176 0.824 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.196 0.804 34 H 0.070 0.930 35 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -12.874 15.586 0.188 20.216 hybrid contribution -0.666 -2.481 -1.069 2.783 sum -13.540 13.105 -0.882 18.863 Atomic orbital electron populations 1.22292 0.71976 1.04861 1.04902 1.48749 1.07756 1.02156 1.56289 1.77290 1.02562 1.08443 1.25768 1.24307 0.95766 0.95071 0.99429 1.21464 0.96971 0.95110 1.14398 1.20333 0.92110 0.88311 1.04477 1.19733 0.89252 0.89436 0.96398 0.83752 1.60598 1.28618 1.12365 1.26346 1.22640 0.98417 0.87324 0.99339 1.19227 0.91510 0.91809 0.79880 0.95162 1.86524 1.45519 1.84359 1.21678 1.21978 0.99892 0.98957 1.41769 0.92004 1.25885 0.94513 1.02712 0.94490 1.70215 1.04915 1.34828 1.43555 0.85618 0.77595 0.79105 0.79257 1.19404 1.21185 1.19108 1.24699 0.81413 0.77154 0.87014 1.90779 1.74760 1.34775 1.41967 1.84803 1.32641 1.60892 1.52613 0.88927 0.87721 0.88972 0.77315 0.83316 0.82399 0.90023 0.95422 0.80353 0.93011 0.71371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.49 9.31 127.77 1.19 2.68 16 2 N -0.37 -8.72 4.01 -356.02 -1.43 -10.15 16 3 N -0.32 -8.49 12.58 -57.02 -0.72 -9.21 16 4 C 0.04 0.96 12.03 85.23 1.02 1.98 16 5 C -0.25 -7.06 10.10 21.99 0.22 -6.83 16 6 C 0.08 2.03 6.25 41.41 0.26 2.29 16 7 C 0.17 4.36 2.59 43.43 0.11 4.47 16 8 H 0.15 3.21 7.80 -2.39 -0.02 3.19 16 9 N -0.65 -21.89 5.31 -499.34 -2.65 -24.54 16 10 C 0.05 2.00 5.02 86.30 0.43 2.43 16 11 C 0.23 11.72 3.10 29.85 0.09 11.82 16 12 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 13 O -0.58 -30.00 12.07 -148.98 -1.80 -31.80 16 14 C -0.59 -31.68 8.76 25.60 0.22 -31.45 16 15 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 16 C 0.03 1.48 5.40 84.65 0.46 1.94 16 17 N -0.90 -53.65 12.84 21.45 0.28 -53.38 16 18 Si 0.96 42.85 29.54 68.60 2.03 44.88 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 C 0.46 11.22 7.44 71.24 0.53 11.75 16 23 O -0.53 -17.34 16.06 21.96 0.35 -16.99 16 24 O -0.50 -7.07 8.25 -51.40 -0.42 -7.50 16 25 H 0.09 1.16 6.75 -2.38 -0.02 1.15 16 26 H 0.10 1.27 6.68 -2.39 -0.02 1.25 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.21 3.72 8.06 -2.91 -0.02 3.69 16 29 H 0.15 4.47 7.79 -2.91 -0.02 4.44 16 30 H 0.35 13.29 7.14 -89.69 -0.64 12.65 16 31 H 0.08 2.95 8.06 -2.39 -0.02 2.93 16 32 H 0.03 1.07 7.62 -2.39 -0.02 1.05 16 33 H 0.35 16.73 9.04 -74.06 -0.67 16.06 16 34 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.42 2.73 9.10 -74.06 -0.67 2.05 16 Total: -1.00 -71.98 302.36 -0.65 -72.63 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -0.83 Total: 34.98 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 4.55 Total: 1.07 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -4.52 Total: -97.27 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -1.87 Total: -56.28 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -71.98 -0.65 -72.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574472540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.028 kcal (2) G-P(sol) polarization free energy of solvation -71.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds