Wall clock time and date at job start Mon Mar 30 2020 00:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40085 * 126.03714 * 2 1 4 4 C 1.30836 * 108.20327 * 179.97438 * 3 2 1 5 5 C 1.39876 * 108.20228 * 359.77868 * 4 3 2 6 6 C 1.34942 * 126.03535 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.12710 * 359.97438 * 6 2 1 8 8 H 1.09001 * 109.47410 * 64.99173 * 7 6 2 9 9 N 1.46902 * 109.46842 * 184.99339 * 7 6 2 10 10 C 1.46905 * 110.99871 * 204.99751 * 9 7 6 11 11 C 1.53000 * 109.47123 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47398 * 59.99875 * 11 10 9 13 13 O 1.42903 * 109.46726 * 299.99631 * 11 10 9 14 14 C 1.50699 * 109.47083 * 179.97438 * 11 10 9 15 15 H 1.08000 * 119.99792 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99902 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00126 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99745 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47319 * 60.00570 * 18 16 14 20 20 H 1.48503 * 109.46734 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47266 * 300.00384 * 18 16 14 22 22 C 1.50699 * 109.47082 * 304.98965 * 7 6 2 23 23 O 1.20828 * 119.99977 * 240.00556 * 22 7 6 24 24 O 1.34231 * 119.99861 * 60.00015 * 22 7 6 25 25 H 1.09004 * 109.47132 * 270.02683 * 1 2 3 26 26 H 1.09003 * 109.46691 * 30.02441 * 1 2 3 27 27 H 1.08997 * 109.47064 * 150.02949 * 1 2 3 28 28 H 1.08002 * 125.90038 * 179.97438 * 4 3 2 29 29 H 1.08001 * 126.03524 * 180.23082 * 5 4 3 30 30 H 1.00896 * 111.00682 * 328.94911 * 9 7 6 31 31 H 1.08992 * 109.47078 * 59.99994 * 10 9 7 32 32 H 1.09004 * 109.46829 * 299.99640 * 10 9 7 33 33 H 0.96700 * 114.00234 * 300.00043 * 13 11 10 34 34 H 0.96999 * 120.00073 * 179.97438 * 17 16 14 35 35 H 0.96698 * 116.99926 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7321 0.0006 5 6 3.5437 -0.6666 0.0061 6 6 2.2589 -1.0912 0.0005 7 6 1.7973 -2.5258 0.0017 8 1 1.2721 -2.7393 -0.9293 9 7 2.9608 -3.4144 0.1224 10 6 2.6737 -4.7380 -0.4467 11 6 3.9058 -5.6335 -0.3022 12 1 4.1568 -5.7386 0.7533 13 8 5.0067 -5.0446 -0.9974 14 6 3.6110 -6.9914 -0.8855 15 1 2.6417 -7.1954 -1.3159 16 6 4.5789 -7.9733 -0.8698 17 7 5.7591 -7.7250 -0.3453 18 14 4.2137 -9.6562 -1.5935 19 1 3.8713 -9.5131 -3.0314 20 1 5.4096 -10.5254 -1.4531 21 1 3.0698 -10.2683 -0.8709 22 6 0.8683 -2.7536 1.1662 23 8 1.1468 -3.5722 2.0101 24 8 -0.2687 -2.0470 1.2659 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 4.4055 1.3710 0.0003 29 1 4.4211 -1.2963 0.0113 30 1 3.7754 -3.0044 -0.3090 31 1 2.4222 -4.6328 -1.5020 32 1 1.8342 -5.1873 0.0839 33 1 4.8533 -4.9209 -1.9442 34 1 6.4398 -8.4159 -0.3339 35 1 -0.8323 -2.2278 2.0305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574472541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:44 Heat of formation + Delta-G solvation = -46.185492 kcal Electronic energy + Delta-G solvation = -20891.809820 eV Core-core repulsion = 17506.418470 eV Total energy + Delta-G solvation = -3385.391349 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.52178 -40.00374 -37.01597 -36.03346 -34.74150 -33.24256 -32.13024 -30.80423 -28.23822 -26.98945 -26.46878 -24.11743 -21.94078 -21.15015 -20.48658 -19.77684 -18.11677 -17.54119 -16.91688 -16.72878 -15.51332 -15.17994 -14.99989 -14.57743 -14.53594 -14.12955 -14.06064 -13.71108 -13.30806 -13.09045 -12.73435 -12.47217 -12.29275 -12.08658 -11.47446 -11.15106 -11.07547 -10.89249 -10.82915 -10.68537 -10.49407 -10.11889 -9.35813 -9.08080 -8.58482 -8.54994 -8.29469 -8.09788 -6.01187 -4.20061 1.67192 2.23566 2.46911 2.73155 3.00198 3.28687 3.34376 3.35669 4.22182 4.30619 4.45028 4.58126 4.99734 5.08418 5.17840 5.24051 5.26197 5.57023 5.62784 5.70105 6.01061 6.08061 6.09928 6.32411 6.42925 6.62891 6.78822 6.86808 7.16756 7.56335 7.65960 7.75350 7.90440 7.94345 8.17264 8.82377 9.34676 9.56423 11.03141 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029273 B = 0.004636 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.268451 B = 6038.218162 C = 6647.687522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.362 5.362 3 N -0.296 5.296 4 C 0.046 3.954 5 C -0.248 4.248 6 C 0.076 3.924 7 C 0.167 3.833 8 H 0.092 0.908 9 N -0.656 5.656 10 C 0.034 3.966 11 C 0.235 3.765 12 H 0.068 0.932 13 O -0.564 6.564 14 C -0.575 4.575 15 H 0.054 0.946 16 C 0.081 3.919 17 N -0.856 5.856 18 Si 0.891 3.109 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.473 3.527 23 O -0.469 6.469 24 O -0.524 6.524 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.186 0.814 29 H 0.158 0.842 30 H 0.364 0.636 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.341 0.659 34 H 0.262 0.738 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.590 14.764 -0.777 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.146 5.146 3 N -0.118 5.118 4 C -0.139 4.139 5 C -0.277 4.277 6 C -0.052 4.052 7 C 0.053 3.947 8 H 0.109 0.891 9 N -0.294 5.294 10 C -0.094 4.094 11 C 0.177 3.823 12 H 0.086 0.914 13 O -0.366 6.366 14 C -0.613 4.613 15 H 0.073 0.927 16 C -0.126 4.126 17 N -0.491 5.491 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 C 0.311 3.689 23 O -0.351 6.351 24 O -0.338 6.338 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.203 0.797 29 H 0.175 0.825 30 H 0.189 0.811 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.184 0.816 34 H 0.071 0.929 35 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -10.870 15.337 0.437 18.804 hybrid contribution -0.378 -1.703 -1.278 2.162 sum -11.248 13.635 -0.841 17.696 Atomic orbital electron populations 1.22007 0.73731 1.03521 1.03998 1.48493 1.06780 1.02802 1.56490 1.77347 1.01964 1.07676 1.24788 1.23837 0.95211 0.94909 0.99968 1.21333 0.96413 0.95129 1.14866 1.20508 0.91915 0.88663 1.04150 1.19328 0.93307 0.87893 0.94150 0.89120 1.60129 1.02867 1.02941 1.63450 1.23064 1.03136 0.87838 0.95351 1.19394 0.80326 0.87941 0.94608 0.91394 1.86611 1.43929 1.84054 1.22042 1.21534 0.99680 0.97588 1.42511 0.92746 1.25015 0.94876 0.98348 0.94317 1.70068 1.03683 1.33336 1.42061 0.86717 0.77807 0.84043 0.79664 1.20199 1.21147 1.20152 1.23363 0.80040 0.78245 0.87258 1.90770 1.72800 1.31894 1.39636 1.84794 1.34152 1.63040 1.51826 0.89837 0.90177 0.88990 0.79713 0.82453 0.81131 0.95813 0.91148 0.81551 0.92862 0.73645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.97 9.31 59.85 0.56 1.52 16 2 N -0.36 -4.62 4.01 -63.88 -0.26 -4.88 16 3 N -0.30 -4.07 12.58 30.63 0.39 -3.68 16 4 C 0.05 0.57 12.03 -17.36 -0.21 0.36 16 5 C -0.25 -3.37 9.81 -40.01 -0.39 -3.76 16 6 C 0.08 1.04 6.23 -82.27 -0.51 0.53 16 7 C 0.17 2.38 2.62 -70.01 -0.18 2.20 16 8 H 0.09 1.15 7.80 -51.93 -0.40 0.74 16 9 N -0.66 -11.46 5.72 -109.18 -0.62 -12.08 16 10 C 0.03 0.69 5.02 -3.82 -0.02 0.67 16 11 C 0.24 5.86 3.10 -27.88 -0.09 5.77 16 12 H 0.07 1.95 8.14 -51.93 -0.42 1.53 16 13 O -0.56 -13.77 12.07 -35.23 -0.43 -14.20 16 14 C -0.57 -15.58 8.76 -34.44 -0.30 -15.88 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 17 N -0.86 -25.20 12.84 55.43 0.71 -24.49 16 18 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.47 6.77 7.49 36.01 0.27 7.04 16 23 O -0.47 -8.72 16.68 -18.75 -0.31 -9.03 16 24 O -0.52 -4.84 8.26 -39.26 -0.32 -5.17 16 25 H 0.08 0.67 6.75 -51.93 -0.35 0.32 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.72 6.68 -51.93 -0.35 0.38 16 28 H 0.19 1.66 8.06 -52.49 -0.42 1.23 16 29 H 0.16 2.08 6.78 -52.49 -0.36 1.72 16 30 H 0.36 6.12 5.86 -39.29 -0.23 5.89 16 31 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 32 H 0.07 1.47 7.62 -51.93 -0.40 1.08 16 33 H 0.34 7.26 9.04 45.56 0.41 7.67 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.40 2.17 9.10 45.56 0.41 2.59 16 LS Contribution 300.87 15.07 4.53 4.53 Total: -1.00 -34.61 300.87 -4.79 -39.40 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -2.49 Total: 13.00 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -0.97 Total: 0.61 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.22 Total: -45.13 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -1.06 Total: -28.40 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.61 -4.79 -39.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574472541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.782 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds