Wall clock time and date at job start Mon Mar 30 2020 00:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40085 * 126.03714 * 2 1 4 4 C 1.30836 * 108.20327 * 179.97438 * 3 2 1 5 5 C 1.39876 * 108.20228 * 359.77868 * 4 3 2 6 6 C 1.34942 * 126.03535 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.12710 * 359.97438 * 6 2 1 8 8 H 1.09001 * 109.47410 * 64.99173 * 7 6 2 9 9 N 1.46902 * 109.46842 * 184.99339 * 7 6 2 10 10 C 1.46905 * 110.99871 * 204.99751 * 9 7 6 11 11 C 1.53000 * 109.47123 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47398 * 59.99875 * 11 10 9 13 13 O 1.42903 * 109.46726 * 299.99631 * 11 10 9 14 14 C 1.50699 * 109.47083 * 179.97438 * 11 10 9 15 15 H 1.08000 * 119.99792 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99902 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00126 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99745 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47319 * 60.00570 * 18 16 14 20 20 H 1.48503 * 109.46734 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47266 * 300.00384 * 18 16 14 22 22 C 1.50699 * 109.47082 * 304.98965 * 7 6 2 23 23 O 1.20828 * 119.99977 * 240.00556 * 22 7 6 24 24 O 1.34231 * 119.99861 * 60.00015 * 22 7 6 25 25 H 1.09004 * 109.47132 * 270.02683 * 1 2 3 26 26 H 1.09003 * 109.46691 * 30.02441 * 1 2 3 27 27 H 1.08997 * 109.47064 * 150.02949 * 1 2 3 28 28 H 1.08002 * 125.90038 * 179.97438 * 4 3 2 29 29 H 1.08001 * 126.03524 * 180.23082 * 5 4 3 30 30 H 1.00896 * 111.00682 * 328.94911 * 9 7 6 31 31 H 1.08992 * 109.47078 * 59.99994 * 10 9 7 32 32 H 1.09004 * 109.46829 * 299.99640 * 10 9 7 33 33 H 0.96700 * 114.00234 * 300.00043 * 13 11 10 34 34 H 0.96999 * 120.00073 * 179.97438 * 17 16 14 35 35 H 0.96698 * 116.99926 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7321 0.0006 5 6 3.5437 -0.6666 0.0061 6 6 2.2589 -1.0912 0.0005 7 6 1.7973 -2.5258 0.0017 8 1 1.2721 -2.7393 -0.9293 9 7 2.9608 -3.4144 0.1224 10 6 2.6737 -4.7380 -0.4467 11 6 3.9058 -5.6335 -0.3022 12 1 4.1568 -5.7386 0.7533 13 8 5.0067 -5.0446 -0.9974 14 6 3.6110 -6.9914 -0.8855 15 1 2.6417 -7.1954 -1.3159 16 6 4.5789 -7.9733 -0.8698 17 7 5.7591 -7.7250 -0.3453 18 14 4.2137 -9.6562 -1.5935 19 1 3.8713 -9.5131 -3.0314 20 1 5.4096 -10.5254 -1.4531 21 1 3.0698 -10.2683 -0.8709 22 6 0.8683 -2.7536 1.1662 23 8 1.1468 -3.5722 2.0101 24 8 -0.2687 -2.0470 1.2659 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 4.4055 1.3710 0.0003 29 1 4.4211 -1.2963 0.0113 30 1 3.7754 -3.0044 -0.3090 31 1 2.4222 -4.6328 -1.5020 32 1 1.8342 -5.1873 0.0839 33 1 4.8533 -4.9209 -1.9442 34 1 6.4398 -8.4159 -0.3339 35 1 -0.8323 -2.2278 2.0305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574472541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:43 Heat of formation + Delta-G solvation = -75.877949 kcal Electronic energy + Delta-G solvation = -20893.097381 eV Core-core repulsion = 17506.418470 eV Total energy + Delta-G solvation = -3386.678911 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.52701 -41.08408 -38.55661 -37.22182 -36.27032 -34.24412 -34.13258 -32.13325 -29.76637 -28.25189 -27.48154 -25.85814 -23.13580 -22.51701 -21.80405 -20.82256 -19.20323 -19.02224 -18.45919 -17.83425 -16.74811 -16.59460 -16.40172 -16.14275 -15.99941 -15.62664 -15.21868 -14.85624 -14.54268 -14.42154 -14.16015 -13.62280 -13.46298 -13.10924 -12.92919 -12.90249 -12.74735 -12.61437 -12.39462 -12.05802 -11.78127 -11.62437 -11.05880 -10.68679 -10.33266 -10.18796 -9.58383 -9.47353 -8.11603 -6.37775 0.65577 1.14439 1.42599 1.44726 1.52518 1.56522 1.74128 2.00379 2.40394 3.06128 3.15104 3.22245 3.71415 3.92052 4.15277 4.29261 4.40738 4.44418 4.49546 4.55067 4.68575 4.75718 4.90309 5.04415 5.10794 5.54039 5.62481 5.65045 5.68537 5.86967 5.99442 6.06960 6.33440 6.66711 6.74920 6.96648 7.35637 7.58229 8.93045 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029273 B = 0.004636 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.268451 B = 6038.218162 C = 6647.687522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.361 5.361 3 N -0.315 5.315 4 C 0.046 3.954 5 C -0.265 4.265 6 C 0.069 3.931 7 C 0.169 3.831 8 H 0.115 0.885 9 N -0.669 5.669 10 C 0.057 3.943 11 C 0.237 3.763 12 H 0.018 0.982 13 O -0.575 6.575 14 C -0.588 4.588 15 H 0.062 0.938 16 C 0.027 3.973 17 N -0.898 5.898 18 Si 0.961 3.039 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.271 1.271 22 C 0.482 3.518 23 O -0.520 6.520 24 O -0.500 6.500 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.214 0.786 29 H 0.154 0.846 30 H 0.366 0.634 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.356 0.644 34 H 0.261 0.739 35 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.278 15.443 -1.910 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.145 5.145 3 N -0.137 5.137 4 C -0.138 4.138 5 C -0.295 4.295 6 C -0.060 4.060 7 C 0.055 3.945 8 H 0.132 0.868 9 N -0.308 5.308 10 C -0.072 4.072 11 C 0.179 3.821 12 H 0.036 0.964 13 O -0.379 6.379 14 C -0.627 4.627 15 H 0.080 0.920 16 C -0.176 4.176 17 N -0.535 5.535 18 Si 0.785 3.215 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.196 1.196 22 C 0.322 3.678 23 O -0.407 6.407 24 O -0.315 6.315 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.231 0.769 29 H 0.172 0.828 30 H 0.191 0.809 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.201 0.799 34 H 0.070 0.930 35 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -12.619 16.058 -0.710 20.435 hybrid contribution 0.083 -1.793 -0.901 2.008 sum -12.535 14.266 -1.611 19.059 Atomic orbital electron populations 1.22328 0.71795 1.04948 1.05081 1.48767 1.07884 1.02064 1.55746 1.77317 1.02575 1.08329 1.25526 1.24302 0.95826 0.94768 0.98895 1.21486 0.96524 0.95894 1.15599 1.20416 0.92323 0.88576 1.04705 1.19302 0.92318 0.87597 0.95243 0.86822 1.59938 1.04429 1.02684 1.63717 1.22568 0.99866 0.88293 0.96458 1.19112 0.82170 0.88921 0.91886 0.96364 1.86538 1.44185 1.83888 1.23261 1.21971 0.99880 0.98759 1.42051 0.92005 1.25898 0.94617 1.02431 0.94676 1.70218 1.04832 1.34677 1.43792 0.85602 0.77533 0.79010 0.79342 1.18827 1.21127 1.19626 1.23329 0.80736 0.77392 0.86322 1.90768 1.74236 1.34287 1.41410 1.84734 1.32650 1.61288 1.52797 0.88809 0.88734 0.87705 0.76921 0.82808 0.80889 0.93770 0.92271 0.79879 0.92984 0.71172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.46 9.31 127.77 1.19 2.65 16 2 N -0.36 -8.44 4.01 -356.02 -1.43 -9.87 16 3 N -0.31 -8.09 12.58 -57.02 -0.72 -8.80 16 4 C 0.05 1.08 12.03 85.24 1.03 2.11 16 5 C -0.27 -6.98 9.81 21.99 0.22 -6.76 16 6 C 0.07 1.79 6.23 41.41 0.26 2.05 16 7 C 0.17 4.57 2.62 43.42 0.11 4.68 16 8 H 0.11 2.58 7.80 -2.39 -0.02 2.56 16 9 N -0.67 -23.26 5.72 -499.34 -2.86 -26.12 16 10 C 0.06 2.26 5.02 86.30 0.43 2.69 16 11 C 0.24 12.06 3.10 29.85 0.09 12.16 16 12 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 13 O -0.57 -28.46 12.07 -148.98 -1.80 -30.26 16 14 C -0.59 -32.00 8.76 25.60 0.22 -31.77 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 16 C 0.03 1.48 5.40 84.65 0.46 1.93 16 17 N -0.90 -53.90 12.84 21.45 0.28 -53.62 16 18 Si 0.96 43.01 29.54 68.60 2.03 45.03 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 C 0.48 13.11 7.49 71.24 0.53 13.64 16 23 O -0.52 -19.29 16.68 21.96 0.37 -18.93 16 24 O -0.50 -7.84 8.26 -51.43 -0.42 -8.27 16 25 H 0.09 1.20 6.75 -2.38 -0.02 1.19 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.10 1.29 6.68 -2.39 -0.02 1.27 16 28 H 0.21 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.15 4.06 6.78 -2.91 -0.02 4.04 16 30 H 0.37 12.31 5.86 -89.70 -0.53 11.78 16 31 H 0.04 1.56 8.05 -2.39 -0.02 1.54 16 32 H 0.06 2.47 7.62 -2.39 -0.02 2.45 16 33 H 0.36 15.07 9.04 -74.06 -0.67 14.40 16 34 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.43 3.30 9.10 -74.06 -0.67 2.62 16 Total: -1.00 -75.56 300.87 -0.73 -76.29 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: -0.71 Total: 31.18 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 4.54 Total: 3.37 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -4.73 Total: -98.41 kcal Atomic # 8 Polarization: -55.60 SS G_CDS: -1.86 Total: -57.46 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -75.56 -0.73 -76.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574472541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.409 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds