Wall clock time and date at job start Mon Mar 30 2020 00:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.42905 * 109.47264 * 119.99945 * 2 1 3 5 5 C 1.42890 * 113.99966 * 270.00126 * 4 2 1 6 6 C 1.50704 * 109.47451 * 179.97438 * 5 4 2 7 7 C 1.35352 * 126.74415 * 359.70937 * 6 5 4 8 8 N 1.35313 * 106.17129 * 179.85229 * 7 6 5 9 9 C 1.46499 * 125.87128 * 180.11900 * 8 7 6 10 10 C 1.52994 * 109.47472 * 125.32410 * 9 8 7 11 11 C 1.50699 * 109.47322 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00241 * 0.02562 * 11 10 9 13 13 C 1.37885 * 120.00199 * 179.97438 * 11 10 9 14 14 N 1.31508 * 119.99650 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99808 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47013 * 89.99803 * 15 13 11 17 17 H 1.48500 * 109.46763 * 209.99632 * 15 13 11 18 18 H 1.48501 * 109.47048 * 329.99582 * 15 13 11 19 19 N 1.28719 * 108.26333 * 0.41865 * 8 7 6 20 20 N 1.28630 * 110.17784 * 359.73404 * 19 8 7 21 21 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 22 22 O 1.20817 * 120.00048 * 245.00155 * 21 2 1 23 23 O 1.34231 * 119.99753 * 65.00084 * 21 2 1 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47426 * 299.99475 * 5 4 2 28 28 H 1.08994 * 109.47765 * 59.99757 * 5 4 2 29 29 H 1.07999 * 126.91830 * 0.02562 * 7 6 5 30 30 H 1.09000 * 109.47431 * 245.33221 * 9 8 7 31 31 H 1.09002 * 109.47001 * 5.32740 * 9 8 7 32 32 H 1.09005 * 109.47470 * 300.00316 * 10 9 8 33 33 H 1.09005 * 109.47006 * 60.00613 * 10 9 8 34 34 H 0.97005 * 119.99712 * 179.97438 * 14 13 11 35 35 H 0.96695 * 116.99889 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1829 2.2940 6 6 2.7003 -0.6284 3.4614 7 6 2.9352 -1.9612 3.4798 8 7 3.3737 -2.2494 4.7271 9 6 3.7572 -3.5757 5.2171 10 6 5.1748 -3.5177 5.7896 11 6 5.5695 -4.8822 6.2931 12 1 4.8785 -5.7082 6.2124 13 6 6.8132 -5.0762 6.8558 14 7 7.1573 -6.2669 7.2956 15 14 8.0087 -3.6477 6.9947 16 1 7.8039 -2.9552 8.2923 17 1 9.4011 -4.1585 6.9205 18 1 7.7714 -2.6937 5.8816 19 7 3.3900 -1.1590 5.4109 20 7 2.9939 -0.1740 4.6848 21 6 2.0323 -0.7105 -1.2305 22 8 2.6506 -1.7428 -1.1219 23 8 1.7929 -0.1964 -2.4471 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.9320 0.9513 2.0450 28 1 1.2539 0.6547 2.5589 29 1 2.8024 -2.6547 2.6626 30 1 3.0631 -3.8898 5.9966 31 1 3.7266 -4.2899 4.3942 32 1 5.8690 -3.2037 5.0100 33 1 5.2054 -2.8036 6.6125 34 1 8.0325 -6.4035 7.6912 35 1 2.1352 -0.6876 -3.2064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599846907.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:29 Heat of formation + Delta-G solvation = -41.630692 kcal Electronic energy + Delta-G solvation = -19801.132093 eV Core-core repulsion = 16415.938254 eV Total energy + Delta-G solvation = -3385.193838 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.90917 -40.69935 -38.41443 -36.38736 -35.24145 -32.98748 -32.53643 -30.85394 -30.41201 -26.89163 -25.80840 -25.22886 -22.26272 -21.70379 -21.37114 -20.16932 -18.47325 -17.64792 -17.15515 -16.94058 -16.24711 -16.08848 -15.98644 -15.22770 -14.71851 -14.32987 -14.20837 -13.82888 -13.50148 -13.20545 -12.82670 -12.78434 -12.48244 -11.94029 -11.89634 -11.80017 -11.44533 -11.17423 -10.82936 -10.69874 -10.66975 -10.28718 -10.21370 -9.98171 -9.50617 -9.43748 -8.84396 -8.68273 -6.19842 -4.22102 1.83786 2.01342 2.15998 2.72471 2.87443 3.26358 3.33473 3.38841 3.40925 4.34420 4.35222 4.44004 4.62535 4.76936 4.96744 5.04964 5.13958 5.18020 5.21229 5.28167 5.32362 5.60170 5.66208 5.74120 6.05167 6.10243 6.12504 6.31941 6.66658 6.82737 7.06199 7.09016 7.53882 7.54976 8.28776 8.79524 8.85005 9.40249 10.92307 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.027132 B = 0.003543 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.729842 B = 7900.251992 C = 8344.944013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 H 0.103 0.897 4 O -0.358 6.358 5 C 0.160 3.840 6 C -0.049 4.049 7 C -0.022 4.022 8 N -0.275 5.275 9 C 0.120 3.880 10 C -0.020 4.020 11 C -0.531 4.531 12 H 0.078 0.922 13 C 0.076 3.924 14 N -0.894 5.894 15 Si 0.879 3.121 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.266 1.266 19 N -0.075 5.075 20 N -0.276 5.276 21 C 0.477 3.523 22 O -0.488 6.488 23 O -0.516 6.516 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.191 0.809 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.024 0.976 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.680 13.855 -18.008 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.043 3.957 3 H 0.121 0.879 4 O -0.276 6.276 5 C 0.083 3.917 6 C -0.187 4.187 7 C -0.175 4.175 8 N -0.068 5.068 9 C 0.002 3.998 10 C -0.059 4.059 11 C -0.569 4.569 12 H 0.096 0.904 13 C -0.127 4.127 14 N -0.532 5.532 15 Si 0.706 3.294 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.191 1.191 19 N -0.055 5.055 20 N -0.144 5.144 21 C 0.316 3.684 22 O -0.373 6.373 23 O -0.329 6.329 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.208 0.792 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -13.146 14.049 -16.140 25.113 hybrid contribution 0.796 -0.216 -1.393 1.619 sum -12.350 13.832 -17.533 25.520 Atomic orbital electron populations 1.22246 0.92205 1.04257 1.04077 1.21276 0.95604 0.96028 0.82757 0.87908 1.87941 1.86677 1.34354 1.18645 1.20271 0.99924 0.89968 0.81584 1.21293 1.09677 0.92577 0.95173 1.23400 1.05514 0.98193 0.90357 1.47956 1.39801 1.10727 1.08339 1.22547 1.00979 0.75372 1.00947 1.19870 0.89444 0.99544 0.97006 1.20794 1.01687 0.93501 1.40918 0.90414 1.24915 0.97868 0.95682 0.94260 1.69883 1.21476 1.21748 1.40064 0.86782 0.80370 0.82843 0.79421 1.19826 1.21076 1.19081 1.78289 1.18710 0.88076 1.20387 1.74965 1.15464 1.22549 1.01421 1.23144 0.76854 0.83719 0.84638 1.90785 1.36472 1.23245 1.86836 1.84460 1.75104 1.56556 1.16769 0.90076 0.90335 0.90923 0.91022 0.90864 0.79185 0.88515 0.87966 0.95783 0.94923 0.92333 0.72584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 9.50 37.16 0.35 -0.62 16 2 C 0.10 0.80 3.24 -27.88 -0.09 0.71 16 3 H 0.10 0.54 7.79 -51.93 -0.40 0.14 16 4 O -0.36 -4.01 8.91 -55.13 -0.49 -4.51 16 5 C 0.16 1.76 6.37 36.01 0.23 1.99 16 6 C -0.05 -0.76 7.22 -82.78 -0.60 -1.36 16 7 C -0.02 -0.36 10.91 -17.05 -0.19 -0.55 16 8 N -0.28 -5.13 3.44 -61.26 -0.21 -5.34 16 9 C 0.12 2.27 6.39 -4.05 -0.03 2.25 16 10 C -0.02 -0.48 4.17 -27.89 -0.12 -0.59 16 11 C -0.53 -14.46 9.66 -34.44 -0.33 -14.80 16 12 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 13 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 14 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 15 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 19 N -0.07 -1.52 12.91 60.35 0.78 -0.74 16 20 N -0.28 -5.15 12.41 33.29 0.41 -4.74 16 21 C 0.48 4.43 7.66 36.01 0.28 4.71 16 22 O -0.49 -6.71 17.26 -25.46 -0.44 -7.15 16 23 O -0.52 -3.05 13.42 -39.26 -0.53 -3.58 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.38 7.87 -51.93 -0.41 -0.03 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 28 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 29 H 0.19 2.66 7.93 -52.49 -0.42 2.24 16 30 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 31 H 0.10 1.71 8.07 -51.93 -0.42 1.29 16 32 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 33 H 0.03 0.79 7.55 -51.93 -0.39 0.40 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.41 0.88 9.10 45.56 0.41 1.29 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -35.27 313.31 -3.92 -39.19 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -3.68 Total: -2.69 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -0.59 Total: -6.20 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 1.76 Total: -36.88 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -1.46 Total: -15.23 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.27 -3.92 -39.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599846907.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.443 kcal (2) G-P(sol) polarization free energy of solvation -35.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds