Wall clock time and date at job start Mon Mar 30 2020 00:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.42905 * 109.47264 * 119.99945 * 2 1 3 5 5 C 1.42890 * 113.99966 * 270.00126 * 4 2 1 6 6 C 1.50704 * 109.47451 * 179.97438 * 5 4 2 7 7 C 1.35352 * 126.74415 * 359.70937 * 6 5 4 8 8 N 1.35313 * 106.17129 * 179.85229 * 7 6 5 9 9 C 1.46499 * 125.87128 * 180.11900 * 8 7 6 10 10 C 1.52994 * 109.47472 * 125.32410 * 9 8 7 11 11 C 1.50699 * 109.47322 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00241 * 0.02562 * 11 10 9 13 13 C 1.37885 * 120.00199 * 179.97438 * 11 10 9 14 14 N 1.31508 * 119.99650 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99808 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47013 * 89.99803 * 15 13 11 17 17 H 1.48500 * 109.46763 * 209.99632 * 15 13 11 18 18 H 1.48501 * 109.47048 * 329.99582 * 15 13 11 19 19 N 1.28719 * 108.26333 * 0.41865 * 8 7 6 20 20 N 1.28630 * 110.17784 * 359.73404 * 19 8 7 21 21 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 22 22 O 1.20817 * 120.00048 * 245.00155 * 21 2 1 23 23 O 1.34231 * 119.99753 * 65.00084 * 21 2 1 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47426 * 299.99475 * 5 4 2 28 28 H 1.08994 * 109.47765 * 59.99757 * 5 4 2 29 29 H 1.07999 * 126.91830 * 0.02562 * 7 6 5 30 30 H 1.09000 * 109.47431 * 245.33221 * 9 8 7 31 31 H 1.09002 * 109.47001 * 5.32740 * 9 8 7 32 32 H 1.09005 * 109.47470 * 300.00316 * 10 9 8 33 33 H 1.09005 * 109.47006 * 60.00613 * 10 9 8 34 34 H 0.97005 * 119.99712 * 179.97438 * 14 13 11 35 35 H 0.96695 * 116.99889 * 179.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1829 2.2940 6 6 2.7003 -0.6284 3.4614 7 6 2.9352 -1.9612 3.4798 8 7 3.3737 -2.2494 4.7271 9 6 3.7572 -3.5757 5.2171 10 6 5.1748 -3.5177 5.7896 11 6 5.5695 -4.8822 6.2931 12 1 4.8785 -5.7082 6.2124 13 6 6.8132 -5.0762 6.8558 14 7 7.1573 -6.2669 7.2956 15 14 8.0087 -3.6477 6.9947 16 1 7.8039 -2.9552 8.2923 17 1 9.4011 -4.1585 6.9205 18 1 7.7714 -2.6937 5.8816 19 7 3.3900 -1.1590 5.4109 20 7 2.9939 -0.1740 4.6848 21 6 2.0323 -0.7105 -1.2305 22 8 2.6506 -1.7428 -1.1219 23 8 1.7929 -0.1964 -2.4471 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.9320 0.9513 2.0450 28 1 1.2539 0.6547 2.5589 29 1 2.8024 -2.6547 2.6626 30 1 3.0631 -3.8898 5.9966 31 1 3.7266 -4.2899 4.3942 32 1 5.8690 -3.2037 5.0100 33 1 5.2054 -2.8036 6.6125 34 1 8.0325 -6.4035 7.6912 35 1 2.1352 -0.6876 -3.2064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599846907.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:28 Heat of formation + Delta-G solvation = -67.897965 kcal Electronic energy + Delta-G solvation = -19802.271127 eV Core-core repulsion = 16415.938254 eV Total energy + Delta-G solvation = -3386.332873 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.25696 -41.37791 -39.13516 -37.06527 -36.81854 -34.85019 -33.49013 -32.20100 -31.80526 -28.00798 -27.38734 -25.87076 -23.95020 -22.88304 -22.17756 -21.62266 -19.37541 -19.11842 -18.21271 -17.69426 -17.51815 -17.41675 -16.76326 -16.36738 -16.09337 -15.69435 -15.45053 -15.19438 -14.81211 -14.30407 -13.91516 -13.75744 -13.43197 -13.21681 -13.05806 -12.78404 -12.57553 -12.52338 -12.39469 -12.20020 -11.94222 -11.86686 -11.59276 -11.45643 -11.09888 -10.86172 -10.84651 -10.05502 -8.38777 -6.44469 0.66306 1.16686 1.30173 1.32426 1.42388 1.44650 1.47596 1.57013 2.27494 2.69853 2.96704 3.50316 3.80785 3.86998 3.94911 4.07104 4.13418 4.17334 4.23956 4.42570 4.47608 4.47996 4.69877 4.83097 4.86561 5.01505 5.04812 5.24375 5.27510 5.39573 5.58711 5.69103 5.97895 6.11221 6.62258 6.98615 7.21060 7.48454 8.76522 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.027132 B = 0.003543 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.729842 B = 7900.251992 C = 8344.944013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.096 3.904 3 H 0.135 0.865 4 O -0.382 6.382 5 C 0.163 3.837 6 C -0.044 4.044 7 C -0.023 4.023 8 N -0.282 5.282 9 C 0.130 3.870 10 C -0.013 4.013 11 C -0.532 4.532 12 H 0.056 0.944 13 C 0.021 3.979 14 N -0.937 5.937 15 Si 0.939 3.061 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.262 1.262 19 N -0.117 5.117 20 N -0.290 5.290 21 C 0.481 3.519 22 O -0.543 6.543 23 O -0.503 6.503 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.211 0.789 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.017 0.983 33 H 0.023 0.977 34 H 0.270 0.730 35 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.611 16.061 -19.693 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.152 0.848 4 O -0.301 6.301 5 C 0.086 3.914 6 C -0.183 4.183 7 C -0.175 4.175 8 N -0.075 5.075 9 C 0.011 3.989 10 C -0.052 4.052 11 C -0.570 4.570 12 H 0.074 0.926 13 C -0.178 4.178 14 N -0.577 5.577 15 Si 0.763 3.237 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.186 1.186 19 N -0.096 5.096 20 N -0.157 5.157 21 C 0.324 3.676 22 O -0.432 6.432 23 O -0.317 6.317 24 H 0.118 0.882 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.228 0.772 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.036 0.964 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -14.100 16.291 -17.851 27.980 hybrid contribution 0.982 -0.883 -1.015 1.665 sum -13.119 15.408 -18.866 27.667 Atomic orbital electron populations 1.22241 0.90512 1.03827 1.05638 1.21610 0.96767 0.96927 0.80911 0.84765 1.87895 1.87182 1.35489 1.19555 1.20413 1.01596 0.89194 0.80227 1.22051 1.07987 0.92824 0.95484 1.23853 1.04811 0.99085 0.89775 1.47849 1.40402 1.10142 1.09142 1.22312 0.98337 0.76289 1.02003 1.19668 0.92207 0.96808 0.96470 1.21098 1.01163 0.94713 1.40072 0.92577 1.25735 0.99870 0.97962 0.94274 1.69997 1.22292 1.23757 1.41620 0.85829 0.78460 0.79828 0.79554 1.19260 1.20285 1.18648 1.78274 1.20835 0.88861 1.21646 1.74907 1.15702 1.22415 1.02666 1.23533 0.75475 0.82817 0.85782 1.90770 1.39169 1.25650 1.87649 1.84427 1.74499 1.56231 1.16543 0.88239 0.89038 0.92347 0.89269 0.88105 0.77246 0.87829 0.85813 0.96437 0.95863 0.92082 0.70635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.50 71.98 0.68 -0.69 16 2 C 0.10 1.22 3.24 29.85 0.10 1.31 16 3 H 0.13 0.84 7.79 -2.39 -0.02 0.82 16 4 O -0.38 -7.59 8.91 -129.95 -1.16 -8.75 16 5 C 0.16 3.06 6.37 71.24 0.45 3.51 16 6 C -0.04 -1.29 7.22 41.60 0.30 -0.99 16 7 C -0.02 -0.71 10.91 83.49 0.91 0.20 16 8 N -0.28 -10.25 3.44 -347.74 -1.20 -11.44 16 9 C 0.13 4.80 6.39 86.38 0.55 5.36 16 10 C -0.01 -0.61 4.17 29.85 0.12 -0.49 16 11 C -0.53 -29.28 9.66 25.60 0.25 -29.03 16 12 H 0.06 3.25 7.99 -2.91 -0.02 3.23 16 13 C 0.02 1.18 5.47 84.66 0.46 1.65 16 14 N -0.94 -57.08 13.96 21.45 0.30 -56.78 16 15 Si 0.94 44.95 27.47 68.60 1.88 46.83 16 16 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 19 N -0.12 -4.70 12.91 37.02 0.48 -4.22 16 20 N -0.29 -10.43 12.41 -48.60 -0.60 -11.03 16 21 C 0.48 8.03 7.66 71.24 0.55 8.57 16 22 O -0.54 -14.56 17.26 28.41 0.49 -14.07 16 23 O -0.50 -4.65 13.42 -51.42 -0.69 -5.34 16 24 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.09 0.54 7.87 -2.39 -0.02 0.52 16 26 H 0.06 0.66 8.14 -2.38 -0.02 0.65 16 27 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 28 H 0.10 1.35 7.87 -2.39 -0.02 1.33 16 29 H 0.21 5.47 7.93 -2.91 -0.02 5.44 16 30 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 31 H 0.12 4.00 8.07 -2.39 -0.02 3.98 16 32 H 0.02 0.83 7.20 -2.38 -0.02 0.81 16 33 H 0.02 1.12 7.55 -2.38 -0.02 1.10 16 34 H 0.27 15.38 8.31 -92.70 -0.77 14.60 16 35 H 0.43 0.89 9.10 -74.06 -0.67 0.21 16 Total: -1.00 -77.07 313.31 4.27 -72.80 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 0.39 Total: 2.61 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 4.38 Total: -10.61 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -1.02 Total: -83.48 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.36 Total: -28.16 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Total: -77.07 4.27 -72.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599846907.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.902 kcal (2) G-P(sol) polarization free energy of solvation -77.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds