Wall clock time and date at job start Mon Mar 30 2020 01:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32582 * 120.40104 * 2 1 4 4 C 1.31765 * 121.01127 * 180.02562 * 3 2 1 5 5 N 1.31766 * 121.83363 * 359.97438 * 4 3 2 6 6 C 1.32981 * 120.68807 * 0.02562 * 5 4 3 7 7 N 1.38644 * 120.52993 * 180.02562 * 6 5 4 8 8 C 1.39791 * 120.00532 * 354.61921 * 7 6 5 9 9 C 1.39335 * 119.94944 * 327.02957 * 8 7 6 10 10 C 1.38478 * 120.42101 * 179.71944 * 9 8 7 11 11 C 1.37691 * 120.32818 * 0.54985 * 10 9 8 12 12 C 1.40749 * 119.88725 * 359.72357 * 11 10 9 13 13 C 1.41412 * 120.20467 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00368 * 151.46224 * 13 12 11 15 15 C 1.39927 * 120.00021 * 331.45289 * 13 12 11 16 16 N 1.30833 * 120.00216 * 166.17330 * 15 13 12 17 17 Si 1.86797 * 120.00052 * 346.17829 * 15 13 12 18 18 H 1.48506 * 109.47329 * 95.31154 * 17 15 13 19 19 H 1.48506 * 109.47415 * 215.31053 * 17 15 13 20 20 H 1.48497 * 109.47104 * 335.31227 * 17 15 13 21 21 C 1.38277 * 119.95298 * 147.29384 * 8 7 6 22 22 C 1.38088 * 120.39765 * 180.02562 * 2 1 3 23 23 C 1.50700 * 120.83530 * 0.24837 * 22 2 1 24 24 H 1.09000 * 109.46959 * 269.97746 * 1 2 3 25 25 H 1.09006 * 109.46951 * 29.97567 * 1 2 3 26 26 H 1.08993 * 109.47655 * 149.97264 * 1 2 3 27 27 H 1.07996 * 119.08275 * 180.02562 * 4 3 2 28 28 H 0.96997 * 119.99545 * 174.62525 * 7 6 5 29 29 H 1.07994 * 119.78873 * 359.96850 * 9 8 7 30 30 H 1.08005 * 119.83481 * 180.25170 * 10 9 8 31 31 H 1.08002 * 120.05561 * 179.74907 * 11 10 9 32 32 H 0.96997 * 120.00345 * 180.02562 * 16 15 13 33 33 H 1.07996 * 120.16049 * 359.97438 * 21 8 7 34 34 H 1.08994 * 109.47124 * 269.72329 * 23 22 2 35 35 H 1.09005 * 109.46943 * 29.72259 * 23 22 2 36 36 H 1.08995 * 109.47300 * 149.72290 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1779 1.1435 0.0000 4 6 3.4955 1.1576 -0.0005 5 7 4.2024 0.0456 -0.0005 6 6 3.6014 -1.1407 -0.0005 7 7 4.3484 -2.3087 0.0000 8 6 5.7404 -2.2482 -0.1130 9 6 6.3337 -1.2409 -0.8711 10 6 7.7119 -1.1684 -0.9849 11 6 8.5112 -2.0985 -0.3588 12 6 7.9258 -3.1251 0.4057 13 6 8.7403 -4.0836 1.0520 14 1 8.3985 -4.5589 1.9595 15 6 9.9891 -4.4164 0.5155 16 7 10.8530 -5.0854 1.2352 17 14 10.4229 -3.9053 -1.2280 18 1 11.1802 -2.6283 -1.1957 19 1 11.2566 -4.9593 -1.8600 20 1 9.1768 -3.7220 -2.0146 21 6 6.5264 -3.1915 0.5232 22 6 2.2057 -1.1911 -0.0005 23 6 1.4805 -2.5121 -0.0067 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8903 -0.5135 26 1 -0.3634 -0.8896 -0.5142 27 1 4.0104 2.1069 -0.0001 28 1 3.9051 -3.1678 0.0786 29 1 5.7150 -0.5096 -1.3698 30 1 8.1619 -0.3811 -1.5716 31 1 9.5854 -2.0401 -0.4539 32 1 11.7188 -5.3157 0.8634 33 1 6.0674 -3.9750 1.1078 34 1 1.3062 -2.8356 1.0194 35 1 0.5252 -2.3997 -0.5196 36 1 2.0855 -3.2563 -0.5245 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001612391358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:34 Heat of formation + Delta-G solvation = 53.849771 kcal Electronic energy + Delta-G solvation = -19467.429610 eV Core-core repulsion = 16529.518129 eV Total energy + Delta-G solvation = -2937.911481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.15248 -39.94252 -37.40221 -35.59384 -35.31765 -33.35101 -32.16743 -30.34610 -29.73386 -27.83166 -27.03293 -24.02446 -23.71606 -22.69218 -22.09094 -19.82445 -18.77801 -18.30963 -17.72419 -16.63877 -16.51852 -16.14424 -15.94294 -15.41368 -15.26666 -14.70460 -14.43318 -14.19339 -14.05410 -13.89501 -13.76788 -13.53255 -13.30640 -12.88704 -12.76917 -12.64843 -12.53766 -12.06571 -11.70921 -11.54031 -11.50621 -11.10220 -10.63647 -10.03070 -9.87921 -9.52319 -8.88194 -8.50781 -6.52774 0.05739 0.20685 0.80814 0.97805 1.28465 1.42564 1.51137 2.02948 2.13716 2.61809 2.92169 3.29318 3.36299 3.51553 3.70492 4.02223 4.11690 4.30324 4.52219 4.54395 4.62389 4.65573 4.72892 4.83393 4.89008 4.97751 5.02370 5.08501 5.10882 5.19993 5.40414 5.53682 5.71914 5.76678 5.81720 5.97996 6.04564 6.28595 6.48017 6.62045 6.74161 6.85097 7.36553 8.20353 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039006 B = 0.004363 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.668576 B = 6416.431792 C = 6808.000088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.184 3.816 3 N -0.572 5.572 4 C 0.317 3.683 5 N -0.585 5.585 6 C 0.412 3.588 7 N -0.643 5.643 8 C 0.186 3.814 9 C -0.214 4.214 10 C -0.069 4.069 11 C -0.260 4.260 12 C 0.090 3.910 13 C -0.482 4.482 14 H 0.055 0.945 15 C 0.046 3.954 16 N -0.855 5.855 17 Si 0.970 3.030 18 H -0.261 1.261 19 H -0.282 1.282 20 H -0.248 1.248 21 C -0.247 4.247 22 C -0.252 4.252 23 C -0.100 4.100 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.214 0.786 28 H 0.425 0.575 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.293 0.707 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.264 6.910 -5.443 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.042 3.958 3 N -0.291 5.291 4 C 0.028 3.972 5 N -0.308 5.308 6 C 0.170 3.830 7 N -0.270 5.270 8 C 0.091 3.909 9 C -0.236 4.236 10 C -0.087 4.087 11 C -0.279 4.279 12 C 0.087 3.913 13 C -0.512 4.512 14 H 0.073 0.927 15 C -0.168 4.168 16 N -0.482 5.482 17 Si 0.795 3.205 18 H -0.186 1.186 19 H -0.209 1.209 20 H -0.172 1.172 21 C -0.269 4.269 22 C -0.261 4.261 23 C -0.157 4.157 24 H 0.115 0.885 25 H 0.102 0.898 26 H 0.121 0.879 27 H 0.230 0.770 28 H 0.265 0.735 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.480 7.623 -5.359 19.808 hybrid contribution 0.506 -1.174 0.012 1.279 sum -16.973 6.448 -5.346 18.928 Atomic orbital electron populations 1.20897 0.85316 1.05020 1.04591 1.21916 0.98927 0.86681 0.88325 1.68320 1.10039 1.30543 1.20226 1.25137 0.86894 0.96299 0.88857 1.68261 1.41888 0.98455 1.22167 1.18758 0.88534 0.86762 0.88909 1.42021 1.03850 1.06216 1.74898 1.17497 0.81735 0.96284 0.95366 1.20608 0.94213 1.02344 1.06418 1.20801 0.93379 0.97196 0.97359 1.21070 0.98169 0.99572 1.09126 1.17589 0.92044 0.91327 0.90335 1.19439 1.00593 1.21350 1.09850 0.92668 1.26822 0.94288 0.92417 1.03243 1.69696 1.07080 1.32309 1.39118 0.85433 0.79339 0.77614 0.78154 1.18639 1.20909 1.17152 1.20766 0.92942 1.04006 1.09210 1.21047 0.91736 1.00100 1.13265 1.20685 1.00829 0.90705 1.03518 0.88537 0.89848 0.87882 0.77011 0.73506 0.86002 0.85485 0.88564 0.89641 0.87659 0.89958 0.88099 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 9.84 71.24 0.70 -0.63 16 2 C 0.18 4.18 6.81 42.41 0.29 4.47 16 3 N -0.57 -15.15 10.37 -188.35 -1.95 -17.10 16 4 C 0.32 8.89 12.28 180.90 2.22 11.11 16 5 N -0.58 -19.57 7.23 -197.52 -1.43 -21.00 16 6 C 0.41 12.90 7.21 133.14 0.96 13.86 16 7 N -0.64 -21.13 5.36 -185.15 -0.99 -22.12 16 8 C 0.19 7.67 6.30 38.15 0.24 7.91 16 9 C -0.21 -8.87 8.60 22.59 0.19 -8.68 16 10 C -0.07 -2.92 10.01 22.20 0.22 -2.70 16 11 C -0.26 -12.53 6.94 22.75 0.16 -12.37 16 12 C 0.09 4.67 5.18 -21.31 -0.11 4.56 16 13 C -0.48 -27.45 9.61 23.46 0.23 -27.23 16 14 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 15 C 0.05 2.50 5.46 85.25 0.47 2.97 16 16 N -0.86 -47.63 13.93 21.82 0.30 -47.33 16 17 Si 0.97 43.53 24.37 68.60 1.67 45.20 16 18 H -0.26 -11.11 6.76 99.48 0.67 -10.44 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.25 -11.26 6.52 99.48 0.65 -10.61 16 21 C -0.25 -11.49 9.70 22.85 0.22 -11.27 16 22 C -0.25 -6.02 5.93 -19.56 -0.12 -6.14 16 23 C -0.10 -1.55 9.21 71.24 0.66 -0.89 16 24 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.10 0.87 6.06 -2.39 -0.01 0.85 16 27 H 0.21 4.62 8.06 -2.91 -0.02 4.60 16 28 H 0.42 11.44 7.03 -92.71 -0.65 10.78 16 29 H 0.12 4.78 6.23 -2.91 -0.02 4.76 16 30 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.10 4.62 4.23 -2.91 -0.01 4.60 16 32 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16 33 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.10 1.02 6.07 -2.38 -0.01 1.01 16 36 H 0.06 1.00 6.77 -2.39 -0.02 0.99 16 Total: -1.00 -66.71 296.09 4.31 -62.40 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.38 Total: 24.97 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 6.33 Total: -25.02 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.07 Total: -107.55 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.67 Total: 45.20 kcal Total: -66.71 4.31 -62.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001612391358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.248 kcal (2) G-P(sol) polarization free energy of solvation -66.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds