Wall clock time and date at job start Mon Mar 30 2020 00:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50693 * 109.47543 * 269.99803 * 3 2 1 5 5 H 1.08003 * 119.99819 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00092 * 179.72116 * 4 3 2 7 7 N 1.31513 * 119.99971 * 0.28586 * 6 4 3 8 8 Si 1.86798 * 119.99999 * 180.27521 * 6 4 3 9 9 H 1.48504 * 109.47180 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47122 * 120.00444 * 8 6 4 11 11 H 1.48501 * 109.47455 * 240.00260 * 8 6 4 12 12 C 1.34777 * 119.99893 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99996 * 179.97438 * 12 2 1 14 14 C 1.50708 * 120.00000 * 0.02562 * 12 2 1 15 15 H 1.09002 * 115.54481 * 316.75566 * 14 12 2 16 16 C 1.52974 * 117.49225 * 171.07879 * 14 12 2 17 17 C 1.53087 * 117.49476 * 102.40425 * 14 12 2 18 18 C 1.52933 * 117.36877 * 0.23659 * 17 14 12 19 19 C 1.53068 * 109.68279 * 279.49174 * 18 17 14 20 20 S 1.81625 * 109.06065 * 299.82180 * 19 18 17 21 21 C 1.81631 * 102.50504 * 55.76756 * 20 19 18 22 22 C 1.52929 * 117.37188 * 214.77401 * 17 14 12 23 23 H 1.09005 * 109.46894 * 89.99455 * 1 2 3 24 24 H 1.08999 * 109.47685 * 209.99626 * 1 2 3 25 25 H 1.08997 * 109.47136 * 329.99989 * 1 2 3 26 26 H 1.09009 * 109.46831 * 150.00091 * 3 2 1 27 27 H 1.09000 * 109.47254 * 30.00755 * 3 2 1 28 28 H 0.97002 * 119.99949 * 180.02562 * 7 6 4 29 29 H 1.08998 * 117.50032 * 359.97438 * 16 14 12 30 30 H 1.09003 * 117.49190 * 145.00714 * 16 14 12 31 31 H 1.08995 * 109.43926 * 39.55802 * 18 17 14 32 32 H 1.09002 * 109.43249 * 159.42737 * 18 17 14 33 33 H 1.08999 * 109.53987 * 179.97438 * 19 18 17 34 34 H 1.08996 * 109.60987 * 59.74410 * 19 18 17 35 35 H 1.09000 * 109.54177 * 184.36070 * 21 20 19 36 36 H 1.09004 * 109.54018 * 64.10346 * 21 20 19 37 37 H 1.09009 * 109.43405 * 200.56906 * 22 17 14 38 38 H 1.09000 * 109.43615 * 320.43423 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0975 1.0962 -2.2416 6 6 3.1215 2.8806 -1.6726 7 7 3.5489 3.6206 -0.6729 8 14 3.4262 3.4237 -3.4337 9 1 2.8494 2.4231 -4.3672 10 1 2.7833 4.7425 -3.6632 11 1 4.8877 3.5377 -3.6708 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0010 14 6 1.3853 -2.4724 -0.0017 15 1 0.5296 -2.5217 0.6717 16 6 2.1932 -3.7541 -0.2127 17 6 1.2850 -3.2294 -1.3285 18 6 1.9630 -2.6034 -2.5481 19 6 1.0645 -1.5111 -3.1334 20 16 -0.5174 -2.2495 -3.6343 21 6 -1.0871 -3.0372 -2.1001 22 6 -0.0069 -4.0007 -1.6021 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5138 26 1 3.1500 1.1383 0.5139 27 1 1.6085 2.0283 0.5139 28 1 4.0219 4.4487 -0.8501 29 1 3.2697 -3.6534 -0.3511 30 1 1.8690 -4.6470 0.3219 31 1 2.9162 -2.1675 -2.2493 32 1 2.1366 -3.3723 -3.3009 33 1 1.5500 -1.0663 -4.0020 34 1 0.8862 -0.7423 -2.3816 35 1 -2.0070 -3.5892 -2.2933 36 1 -1.2707 -2.2734 -1.3444 37 1 0.1785 -4.7613 -2.3607 38 1 -0.3444 -4.4805 -0.6833 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625791018.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:12 Heat of formation + Delta-G solvation = -19.273082 kcal Electronic energy + Delta-G solvation = -19739.618904 eV Core-core repulsion = 16901.687779 eV Total energy + Delta-G solvation = -2837.931125 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05908 -37.42789 -34.88146 -32.63878 -32.24246 -31.60273 -28.12988 -25.98276 -25.18574 -23.66190 -23.20636 -21.80275 -19.55499 -18.02924 -16.85311 -16.68383 -16.32602 -15.26098 -14.85964 -14.55591 -14.32476 -14.04402 -13.72863 -13.50009 -13.24124 -12.77679 -12.55176 -12.36990 -12.14537 -12.08939 -11.95719 -11.55872 -11.24771 -11.23039 -10.89142 -10.63824 -10.42076 -10.23319 -10.16248 -9.87155 -9.60523 -9.49546 -8.92800 -8.45877 -7.69002 -7.54406 -6.06702 -4.11236 1.91121 2.67512 3.10527 3.28145 3.35964 3.39090 3.76124 3.99443 4.41768 4.62232 4.70861 4.77585 4.85560 5.00545 5.20335 5.23977 5.29790 5.39369 5.48231 5.55310 5.59843 5.67570 5.79706 5.80378 5.89598 5.95350 6.07227 6.11164 6.19738 6.35442 6.37547 7.02433 7.40479 7.50972 7.89531 8.20057 8.37356 8.87354 9.06502 9.54011 11.01542 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019922 B = 0.007297 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.120804 B = 3836.155870 C = 4471.129398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.597 5.597 3 C 0.245 3.755 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.535 3.465 13 O -0.540 6.540 14 C -0.179 4.179 15 H 0.117 0.883 16 C -0.137 4.137 17 C -0.111 4.111 18 C -0.087 4.087 19 C -0.079 4.079 20 S -0.277 6.277 21 C -0.080 4.080 22 C -0.080 4.080 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.032 0.968 28 H 0.263 0.737 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.583 -14.335 -0.525 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.328 5.328 3 C 0.126 3.874 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.322 3.678 13 O -0.418 6.418 14 C -0.200 4.200 15 H 0.135 0.865 16 C -0.174 4.174 17 C -0.111 4.111 18 C -0.126 4.126 19 C -0.227 4.227 20 S -0.051 6.051 21 C -0.228 4.228 22 C -0.118 4.118 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.126 0.874 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.361 -14.075 -1.482 16.968 hybrid contribution 0.596 0.575 0.288 0.877 sum -8.765 -13.500 -1.194 16.140 Atomic orbital electron populations 1.21680 0.81654 1.01533 1.01118 1.48076 1.06005 1.07684 1.71075 1.19328 0.92519 0.77924 0.97643 1.21438 1.36473 1.06096 0.92184 0.92300 1.24922 0.95408 0.96425 0.97299 1.69938 1.38557 1.14220 1.30636 0.86495 0.78070 0.78496 0.84720 1.19716 1.20934 1.20891 1.19290 0.87377 0.84000 0.77176 1.90662 1.13724 1.87012 1.50375 1.22533 1.03095 0.93023 1.01395 0.86481 1.23089 0.99119 0.95318 0.99859 1.21598 0.98117 1.01535 0.89898 1.21318 0.98854 0.97087 0.95343 1.23567 0.93478 1.00323 1.05317 1.86633 1.28135 1.70193 1.20100 1.23346 1.00771 1.01085 0.97618 1.21294 0.91830 0.96858 1.01863 0.93189 0.92708 0.91341 0.93888 0.95039 0.92770 0.87350 0.88309 0.89344 0.90477 0.87877 0.87895 0.88021 0.89788 0.90039 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 9.93 59.84 0.59 1.93 16 2 N -0.60 -12.32 2.36 -182.96 -0.43 -12.75 16 3 C 0.24 6.30 5.20 -5.20 -0.03 6.27 16 4 C -0.52 -14.46 9.39 -34.44 -0.32 -14.78 16 5 H 0.06 1.61 7.08 -52.48 -0.37 1.24 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 8 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.54 10.80 5.60 -10.98 -0.06 10.74 16 13 O -0.54 -13.25 15.30 5.56 0.08 -13.16 16 14 C -0.18 -2.63 4.78 -91.74 -0.44 -3.07 16 15 H 0.12 1.45 6.81 -51.93 -0.35 1.09 16 16 C -0.14 -1.77 9.39 -26.67 -0.25 -2.02 16 17 C -0.11 -1.43 1.76 -154.46 -0.27 -1.71 16 18 C -0.09 -1.32 4.89 -26.73 -0.13 -1.45 16 19 C -0.08 -1.28 6.42 37.19 0.24 -1.04 16 20 S -0.28 -3.85 22.25 -107.50 -2.39 -6.24 16 21 C -0.08 -0.85 6.47 37.20 0.24 -0.61 16 22 C -0.08 -0.80 5.46 -26.73 -0.15 -0.95 16 23 H 0.05 0.79 6.83 -51.93 -0.35 0.44 16 24 H 0.05 0.69 6.16 -51.93 -0.32 0.37 16 25 H 0.07 1.05 7.89 -51.93 -0.41 0.64 16 26 H 0.04 1.26 7.42 -51.92 -0.39 0.87 16 27 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.11 1.61 7.70 -51.93 -0.40 1.22 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.61 6.89 -51.93 -0.36 1.25 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 34 H 0.10 1.89 4.43 -51.93 -0.23 1.66 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 LS Contribution 313.16 15.07 4.72 4.72 Total: -1.00 -31.56 313.16 -8.66 -40.22 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.68 Total: 1.21 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -0.67 Total: -5.05 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.31 Total: -38.44 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -2.39 Total: -6.24 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.56 -8.66 -40.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625791018.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.946 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds