Wall clock time and date at job start Mon Mar 30 2020 00:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50693 * 109.47543 * 269.99803 * 3 2 1 5 5 H 1.08003 * 119.99819 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00092 * 179.72116 * 4 3 2 7 7 N 1.31513 * 119.99971 * 0.28586 * 6 4 3 8 8 Si 1.86798 * 119.99999 * 180.27521 * 6 4 3 9 9 H 1.48504 * 109.47180 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47122 * 120.00444 * 8 6 4 11 11 H 1.48501 * 109.47455 * 240.00260 * 8 6 4 12 12 C 1.34777 * 119.99893 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99996 * 179.97438 * 12 2 1 14 14 C 1.50708 * 120.00000 * 0.02562 * 12 2 1 15 15 H 1.09002 * 115.54481 * 316.75566 * 14 12 2 16 16 C 1.52974 * 117.49225 * 171.07879 * 14 12 2 17 17 C 1.53087 * 117.49476 * 102.40425 * 14 12 2 18 18 C 1.52933 * 117.36877 * 0.23659 * 17 14 12 19 19 C 1.53068 * 109.68279 * 279.49174 * 18 17 14 20 20 S 1.81625 * 109.06065 * 299.82180 * 19 18 17 21 21 C 1.81631 * 102.50504 * 55.76756 * 20 19 18 22 22 C 1.52929 * 117.37188 * 214.77401 * 17 14 12 23 23 H 1.09005 * 109.46894 * 89.99455 * 1 2 3 24 24 H 1.08999 * 109.47685 * 209.99626 * 1 2 3 25 25 H 1.08997 * 109.47136 * 329.99989 * 1 2 3 26 26 H 1.09009 * 109.46831 * 150.00091 * 3 2 1 27 27 H 1.09000 * 109.47254 * 30.00755 * 3 2 1 28 28 H 0.97002 * 119.99949 * 180.02562 * 7 6 4 29 29 H 1.08998 * 117.50032 * 359.97438 * 16 14 12 30 30 H 1.09003 * 117.49190 * 145.00714 * 16 14 12 31 31 H 1.08995 * 109.43926 * 39.55802 * 18 17 14 32 32 H 1.09002 * 109.43249 * 159.42737 * 18 17 14 33 33 H 1.08999 * 109.53987 * 179.97438 * 19 18 17 34 34 H 1.08996 * 109.60987 * 59.74410 * 19 18 17 35 35 H 1.09000 * 109.54177 * 184.36070 * 21 20 19 36 36 H 1.09004 * 109.54018 * 64.10346 * 21 20 19 37 37 H 1.09009 * 109.43405 * 200.56906 * 22 17 14 38 38 H 1.09000 * 109.43615 * 320.43423 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0975 1.0962 -2.2416 6 6 3.1215 2.8806 -1.6726 7 7 3.5489 3.6206 -0.6729 8 14 3.4262 3.4237 -3.4337 9 1 2.8494 2.4231 -4.3672 10 1 2.7833 4.7425 -3.6632 11 1 4.8877 3.5377 -3.6708 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0010 14 6 1.3853 -2.4724 -0.0017 15 1 0.5296 -2.5217 0.6717 16 6 2.1932 -3.7541 -0.2127 17 6 1.2850 -3.2294 -1.3285 18 6 1.9630 -2.6034 -2.5481 19 6 1.0645 -1.5111 -3.1334 20 16 -0.5174 -2.2495 -3.6343 21 6 -1.0871 -3.0372 -2.1001 22 6 -0.0069 -4.0007 -1.6021 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5138 26 1 3.1500 1.1383 0.5139 27 1 1.6085 2.0283 0.5139 28 1 4.0219 4.4487 -0.8501 29 1 3.2697 -3.6534 -0.3511 30 1 1.8690 -4.6470 0.3219 31 1 2.9162 -2.1675 -2.2493 32 1 2.1366 -3.3723 -3.3009 33 1 1.5500 -1.0663 -4.0020 34 1 0.8862 -0.7423 -2.3816 35 1 -2.0070 -3.5892 -2.2933 36 1 -1.2707 -2.2734 -1.3444 37 1 0.1785 -4.7613 -2.3607 38 1 -0.3444 -4.4805 -0.6833 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625791018.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:12 Heat of formation + Delta-G solvation = -38.131127 kcal Electronic energy + Delta-G solvation = -19740.436651 eV Core-core repulsion = 16901.687779 eV Total energy + Delta-G solvation = -2838.748871 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.41526 -38.81003 -36.62967 -34.72209 -33.36535 -32.62705 -30.07112 -27.44350 -26.61621 -25.16227 -24.23467 -23.34974 -20.72739 -19.46409 -18.76006 -18.08062 -17.71611 -17.03882 -16.24595 -16.03231 -15.74624 -15.33095 -14.87385 -14.69403 -14.59031 -14.23561 -13.93640 -13.71785 -13.63942 -13.49285 -13.19893 -13.07151 -12.89802 -12.72616 -12.55737 -12.32357 -12.17811 -11.70780 -11.47782 -11.29695 -10.95536 -10.67492 -10.56643 -10.52052 -9.44760 -8.63216 -8.24978 -6.38263 0.85455 1.31956 1.33611 1.44959 1.62960 1.68397 2.24931 2.40716 2.75074 3.04961 3.52953 3.64404 3.72712 3.74941 3.97776 4.05054 4.20236 4.32407 4.41060 4.47772 4.51855 4.63007 4.75412 4.81550 4.85793 4.89914 4.95524 4.98009 5.03294 5.11377 5.19954 5.23162 5.29918 5.55900 5.81693 6.03784 6.68641 6.77329 7.27004 7.48105 8.82536 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019922 B = 0.007297 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.120804 B = 3836.155870 C = 4471.129398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.603 5.603 3 C 0.260 3.740 4 C -0.532 4.532 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.929 5.929 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.527 3.473 13 O -0.598 6.598 14 C -0.186 4.186 15 H 0.155 0.845 16 C -0.127 4.127 17 C -0.098 4.098 18 C -0.085 4.085 19 C -0.080 4.080 20 S -0.289 6.289 21 C -0.074 4.074 22 C -0.071 4.071 23 H 0.050 0.950 24 H 0.099 0.901 25 H 0.070 0.930 26 H -0.004 1.004 27 H 0.022 0.978 28 H 0.266 0.734 29 H 0.078 0.922 30 H 0.143 0.857 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.413 -16.903 -0.815 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.333 5.333 3 C 0.138 3.862 4 C -0.571 4.571 5 H 0.074 0.926 6 C -0.190 4.190 7 N -0.569 5.569 8 Si 0.784 3.216 9 H -0.192 1.192 10 H -0.195 1.195 11 H -0.208 1.208 12 C 0.317 3.683 13 O -0.480 6.480 14 C -0.207 4.207 15 H 0.173 0.827 16 C -0.164 4.164 17 C -0.099 4.099 18 C -0.124 4.124 19 C -0.228 4.228 20 S -0.063 6.063 21 C -0.221 4.221 22 C -0.110 4.110 23 H 0.069 0.931 24 H 0.117 0.883 25 H 0.089 0.911 26 H 0.014 0.986 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.161 0.839 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.150 0.850 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.240 -16.658 -1.771 20.747 hybrid contribution 1.478 1.357 0.397 2.045 sum -10.763 -15.301 -1.374 18.758 Atomic orbital electron populations 1.21923 0.78376 1.03882 1.01889 1.48040 1.08002 1.06246 1.71001 1.18771 0.90990 0.80302 0.96109 1.21696 1.36337 1.06117 0.92952 0.92636 1.25789 0.95149 0.96602 1.01480 1.70051 1.39324 1.14744 1.32782 0.85491 0.77881 0.78538 0.79721 1.19177 1.19455 1.20787 1.20299 0.87072 0.85606 0.75348 1.90626 1.16619 1.88015 1.52741 1.22497 1.04180 0.90130 1.03876 0.82734 1.23205 0.97619 0.95751 0.99807 1.21683 0.99618 1.00614 0.87941 1.21258 0.97001 0.97123 0.97064 1.23360 0.95471 1.00202 1.03753 1.86666 1.26170 1.70486 1.23016 1.23554 1.01965 1.01276 0.95352 1.21345 0.89316 0.96269 1.04031 0.93101 0.88297 0.91074 0.98610 0.95970 0.92480 0.90304 0.83912 0.93737 0.88997 0.89988 0.90438 0.84963 0.89310 0.88912 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.46 9.93 127.77 1.27 3.73 16 2 N -0.60 -25.42 2.36 -851.13 -2.01 -27.43 16 3 C 0.26 14.11 5.20 85.63 0.45 14.55 16 4 C -0.53 -30.73 9.39 25.60 0.24 -30.49 16 5 H 0.06 3.17 7.08 -2.91 -0.02 3.15 16 6 C 0.01 0.50 5.46 84.65 0.46 0.96 16 7 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 8 Si 0.96 45.76 29.54 68.60 2.03 47.78 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 12 C 0.53 21.71 5.60 87.66 0.49 22.20 16 13 O -0.60 -31.19 15.30 -3.03 -0.05 -31.24 16 14 C -0.19 -5.00 4.78 -11.52 -0.06 -5.05 16 15 H 0.16 2.99 6.81 -2.39 -0.02 2.97 16 16 C -0.13 -2.94 9.39 30.63 0.29 -2.65 16 17 C -0.10 -2.25 1.76 -52.15 -0.09 -2.34 16 18 C -0.09 -2.58 4.89 30.59 0.15 -2.43 16 19 C -0.08 -2.59 6.42 72.00 0.46 -2.13 16 20 S -0.29 -7.41 22.25 -56.49 -1.26 -8.67 16 21 C -0.07 -1.20 6.47 72.01 0.47 -0.74 16 22 C -0.07 -1.03 5.46 30.60 0.17 -0.87 16 23 H 0.05 1.54 6.83 -2.38 -0.02 1.53 16 24 H 0.10 2.09 6.16 -2.39 -0.01 2.08 16 25 H 0.07 2.10 7.89 -2.39 -0.02 2.08 16 26 H 0.00 -0.27 7.42 -2.38 -0.02 -0.28 16 27 H 0.02 1.23 7.89 -2.39 -0.02 1.21 16 28 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.08 2.35 7.70 -2.39 -0.02 2.33 16 30 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.04 1.72 6.89 -2.39 -0.02 1.71 16 32 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.08 2.90 4.43 -2.39 -0.01 2.89 16 35 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.11 0.95 8.08 -2.39 -0.02 0.93 16 Total: -1.00 -74.99 313.16 4.34 -70.65 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 1.05 Total: 10.71 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 4.29 Total: -5.26 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -1.72 Total: -83.98 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.05 Total: -31.24 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 16 Polarization: -7.41 SS G_CDS: -1.26 Total: -8.67 kcal Total: -74.99 4.34 -70.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625791018.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.521 kcal (2) G-P(sol) polarization free energy of solvation -74.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds