Wall clock time and date at job start Mon Mar 30 2020 00:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00383 * 2 1 4 4 C 1.50698 * 109.46763 * 270.00308 * 3 2 1 5 5 H 1.07997 * 120.00223 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99796 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00249 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47567 * 89.99515 * 8 6 4 10 10 H 1.48501 * 109.47241 * 209.99755 * 8 6 4 11 11 H 1.48508 * 109.47003 * 329.99179 * 8 6 4 12 12 C 1.34782 * 119.99990 * 179.97438 * 2 1 3 13 13 O 1.21276 * 120.00014 * 179.97438 * 12 2 1 14 14 C 1.50704 * 119.99841 * 359.97438 * 12 2 1 15 15 H 1.09004 * 115.54755 * 37.18141 * 14 12 2 16 16 C 1.52986 * 117.49744 * 182.83737 * 14 12 2 17 17 C 1.53102 * 60.03734 * 107.49694 * 16 14 12 18 18 C 1.52928 * 117.37247 * 252.72962 * 17 16 14 19 19 C 1.53076 * 109.68765 * 279.49691 * 18 17 16 20 20 S 1.81636 * 109.05632 * 299.81467 * 19 18 17 21 21 C 1.81626 * 102.49542 * 55.77147 * 20 19 18 22 22 C 1.52930 * 117.37091 * 107.27549 * 17 16 14 23 23 H 1.09001 * 109.46818 * 269.99976 * 1 2 3 24 24 H 1.08998 * 109.47344 * 30.00153 * 1 2 3 25 25 H 1.08999 * 109.47408 * 150.00223 * 1 2 3 26 26 H 1.09000 * 109.46636 * 29.99382 * 3 2 1 27 27 H 1.08998 * 109.47573 * 149.99803 * 3 2 1 28 28 H 0.97004 * 120.00255 * 180.02562 * 7 6 4 29 29 H 1.08996 * 117.49308 * 215.00291 * 16 14 12 30 30 H 1.08995 * 117.48923 * 359.97438 * 16 14 12 31 31 H 1.09003 * 109.43531 * 39.56327 * 18 17 16 32 32 H 1.08997 * 109.43502 * 159.43127 * 18 17 16 33 33 H 1.09004 * 109.54230 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.54100 * 59.68767 * 19 18 17 35 35 H 1.09004 * 109.53859 * 184.35793 * 21 20 19 36 36 H 1.09002 * 109.54010 * 64.10362 * 21 20 19 37 37 H 1.09003 * 109.43314 * 200.56699 * 22 17 16 38 38 H 1.08995 * 109.43694 * 320.47890 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7036 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1270 2.8773 -1.6729 7 7 3.5544 3.6174 -0.6733 8 14 3.4376 3.4169 -3.4340 9 1 2.3079 4.2605 -3.8999 10 1 4.6983 4.1991 -3.4970 11 1 3.5538 2.2199 -4.3053 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3853 -2.4724 0.0017 15 1 0.4715 -2.4881 -0.5923 16 6 2.2059 -3.7617 0.0694 17 6 1.4059 -3.2995 1.2902 18 6 2.1926 -2.7345 2.4736 19 6 2.7588 -3.8832 3.3121 20 16 1.3859 -4.8994 3.9297 21 6 0.5177 -5.3575 2.4015 22 6 0.1408 -4.0843 1.6400 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6084 2.0283 0.5137 27 1 3.1500 1.1384 0.5138 28 1 4.0313 4.4433 -0.8505 29 1 1.8318 -4.6257 -0.4798 30 1 3.2908 -3.6660 0.1127 31 1 3.0116 -2.1177 2.1034 32 1 1.5318 -2.1262 3.0911 33 1 3.3194 -3.4778 4.1545 34 1 3.4166 -4.4953 2.6950 35 1 -0.3856 -5.9153 2.6486 36 1 1.1699 -5.9732 1.7822 37 1 -0.5078 -3.4679 2.2625 38 1 -0.3845 -4.3527 0.7235 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625791019.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:14 Heat of formation + Delta-G solvation = -20.233767 kcal Electronic energy + Delta-G solvation = -18974.713118 eV Core-core repulsion = 16136.740334 eV Total energy + Delta-G solvation = -2837.972784 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.01732 -37.54879 -34.80321 -32.70975 -32.28652 -31.78816 -28.03268 -25.93808 -25.04109 -24.19611 -23.36300 -21.75088 -19.36442 -18.09542 -16.73762 -16.66330 -16.42422 -15.44093 -15.19954 -14.71704 -14.37258 -13.96590 -13.75706 -13.59398 -13.36063 -12.94107 -12.49226 -12.42306 -12.21672 -12.13603 -12.00814 -11.61907 -11.38326 -11.22587 -10.91401 -10.61972 -10.56811 -10.25674 -10.14857 -9.88663 -9.74040 -9.63349 -8.91818 -8.45162 -7.79048 -7.64749 -6.05885 -4.10791 1.68252 2.43745 3.05330 3.28859 3.35605 3.40147 3.85244 3.93064 4.42930 4.56232 4.62552 4.65918 4.80518 4.90981 5.04726 5.20064 5.21592 5.28319 5.33048 5.42975 5.50925 5.63171 5.72823 5.77715 5.81323 5.90152 5.95117 6.06161 6.15557 6.23255 6.29416 7.04089 7.41479 7.52326 7.90458 8.21485 8.40434 8.88305 9.08135 9.54463 11.02157 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038632 B = 0.004288 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.604941 B = 6528.597937 C = 6650.251218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.597 5.597 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.534 3.466 13 O -0.541 6.541 14 C -0.170 4.170 15 H 0.120 0.880 16 C -0.143 4.143 17 C -0.111 4.111 18 C -0.092 4.092 19 C -0.070 4.070 20 S -0.276 6.276 21 C -0.075 4.075 22 C -0.082 4.082 23 H 0.044 0.956 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.373 -16.113 5.693 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.328 5.328 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.321 3.679 13 O -0.420 6.420 14 C -0.191 4.191 15 H 0.137 0.863 16 C -0.180 4.180 17 C -0.112 4.112 18 C -0.131 4.131 19 C -0.218 4.218 20 S -0.050 6.050 21 C -0.223 4.223 22 C -0.121 4.121 23 H 0.063 0.937 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.876 -16.183 6.801 19.240 hybrid contribution 0.315 0.802 -2.349 2.502 sum -7.560 -15.382 4.452 17.708 Atomic orbital electron populations 1.21635 0.81440 1.02371 1.00437 1.48075 1.06208 1.07640 1.70860 1.19295 0.92512 0.78043 0.97521 1.21430 1.36547 1.06302 0.92276 0.92504 1.24936 0.95317 0.96379 0.97454 1.69933 1.38380 1.14324 1.30739 0.86494 0.77702 0.78590 0.84634 1.20619 1.21046 1.19903 1.19289 0.87368 0.84039 0.77215 1.90653 1.13740 1.87032 1.50557 1.22553 1.02516 0.92225 1.01846 0.86258 1.23083 0.99833 0.95854 0.99218 1.21536 0.98458 1.01572 0.89625 1.21371 1.00346 0.96672 0.94728 1.23356 0.97017 0.98536 1.02868 1.86711 1.35106 1.67114 1.16109 1.23322 1.02611 1.00026 0.96361 1.21295 0.95511 0.94673 1.00580 0.93732 0.90898 0.92476 0.94989 0.93866 0.92698 0.88419 0.87393 0.88994 0.90375 0.87749 0.89716 0.87889 0.89813 0.90053 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 10.26 59.85 0.61 1.97 16 2 N -0.60 -12.65 2.86 -182.96 -0.52 -13.17 16 3 C 0.25 6.43 5.16 -5.20 -0.03 6.41 16 4 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 12 C 0.53 10.96 6.27 -10.98 -0.07 10.89 16 13 O -0.54 -13.36 14.82 5.56 0.08 -13.27 16 14 C -0.17 -2.51 4.90 -91.71 -0.45 -2.96 16 15 H 0.12 1.52 6.55 -51.93 -0.34 1.18 16 16 C -0.14 -1.84 9.47 -26.69 -0.25 -2.09 16 17 C -0.11 -1.36 1.76 -154.46 -0.27 -1.63 16 18 C -0.09 -1.24 5.06 -26.73 -0.14 -1.38 16 19 C -0.07 -0.80 6.47 37.20 0.24 -0.56 16 20 S -0.28 -3.09 22.26 -107.50 -2.39 -5.48 16 21 C -0.07 -0.67 6.47 37.19 0.24 -0.43 16 22 C -0.08 -0.77 5.46 -26.73 -0.15 -0.92 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 25 H 0.06 0.75 6.04 -51.93 -0.31 0.43 16 26 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 27 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.11 1.60 7.67 -51.93 -0.40 1.21 16 31 H 0.09 1.53 6.21 -51.93 -0.32 1.20 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.10 1.13 8.14 -51.92 -0.42 0.70 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 LS Contribution 319.58 15.07 4.82 4.82 Total: -1.00 -32.33 319.58 -8.92 -41.25 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.94 Total: -0.76 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -0.68 Total: -4.36 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.21 Total: -39.07 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.39 Total: -5.48 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.33 -8.92 -41.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625791019.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.014 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds