Wall clock time and date at job start Mon Mar 30 2020 00:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00383 * 2 1 4 4 C 1.50698 * 109.46763 * 270.00308 * 3 2 1 5 5 H 1.07997 * 120.00223 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99796 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00249 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47567 * 89.99515 * 8 6 4 10 10 H 1.48501 * 109.47241 * 209.99755 * 8 6 4 11 11 H 1.48508 * 109.47003 * 329.99179 * 8 6 4 12 12 C 1.34782 * 119.99990 * 179.97438 * 2 1 3 13 13 O 1.21276 * 120.00014 * 179.97438 * 12 2 1 14 14 C 1.50704 * 119.99841 * 359.97438 * 12 2 1 15 15 H 1.09004 * 115.54755 * 37.18141 * 14 12 2 16 16 C 1.52986 * 117.49744 * 182.83737 * 14 12 2 17 17 C 1.53102 * 60.03734 * 107.49694 * 16 14 12 18 18 C 1.52928 * 117.37247 * 252.72962 * 17 16 14 19 19 C 1.53076 * 109.68765 * 279.49691 * 18 17 16 20 20 S 1.81636 * 109.05632 * 299.81467 * 19 18 17 21 21 C 1.81626 * 102.49542 * 55.77147 * 20 19 18 22 22 C 1.52930 * 117.37091 * 107.27549 * 17 16 14 23 23 H 1.09001 * 109.46818 * 269.99976 * 1 2 3 24 24 H 1.08998 * 109.47344 * 30.00153 * 1 2 3 25 25 H 1.08999 * 109.47408 * 150.00223 * 1 2 3 26 26 H 1.09000 * 109.46636 * 29.99382 * 3 2 1 27 27 H 1.08998 * 109.47573 * 149.99803 * 3 2 1 28 28 H 0.97004 * 120.00255 * 180.02562 * 7 6 4 29 29 H 1.08996 * 117.49308 * 215.00291 * 16 14 12 30 30 H 1.08995 * 117.48923 * 359.97438 * 16 14 12 31 31 H 1.09003 * 109.43531 * 39.56327 * 18 17 16 32 32 H 1.08997 * 109.43502 * 159.43127 * 18 17 16 33 33 H 1.09004 * 109.54230 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.54100 * 59.68767 * 19 18 17 35 35 H 1.09004 * 109.53859 * 184.35793 * 21 20 19 36 36 H 1.09002 * 109.54010 * 64.10362 * 21 20 19 37 37 H 1.09003 * 109.43314 * 200.56699 * 22 17 16 38 38 H 1.08995 * 109.43694 * 320.47890 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7036 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1270 2.8773 -1.6729 7 7 3.5544 3.6174 -0.6733 8 14 3.4376 3.4169 -3.4340 9 1 2.3079 4.2605 -3.8999 10 1 4.6983 4.1991 -3.4970 11 1 3.5538 2.2199 -4.3053 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3853 -2.4724 0.0017 15 1 0.4715 -2.4881 -0.5923 16 6 2.2059 -3.7617 0.0694 17 6 1.4059 -3.2995 1.2902 18 6 2.1926 -2.7345 2.4736 19 6 2.7588 -3.8832 3.3121 20 16 1.3859 -4.8994 3.9297 21 6 0.5177 -5.3575 2.4015 22 6 0.1408 -4.0843 1.6400 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6084 2.0283 0.5137 27 1 3.1500 1.1384 0.5138 28 1 4.0313 4.4433 -0.8505 29 1 1.8318 -4.6257 -0.4798 30 1 3.2908 -3.6660 0.1127 31 1 3.0116 -2.1177 2.1034 32 1 1.5318 -2.1262 3.0911 33 1 3.3194 -3.4778 4.1545 34 1 3.4166 -4.4953 2.6950 35 1 -0.3856 -5.9153 2.6486 36 1 1.1699 -5.9732 1.7822 37 1 -0.5078 -3.4679 2.2625 38 1 -0.3845 -4.3527 0.7235 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625791019.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:14 Heat of formation + Delta-G solvation = -39.668885 kcal Electronic energy + Delta-G solvation = -18975.555888 eV Core-core repulsion = 16136.740334 eV Total energy + Delta-G solvation = -2838.815554 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.35929 -38.91113 -36.57014 -34.74191 -33.39762 -32.64821 -30.00278 -27.41338 -26.15423 -25.78761 -24.24480 -23.41540 -20.43122 -19.50360 -18.72795 -18.04207 -17.60796 -17.11847 -16.43280 -16.28378 -15.78161 -15.19196 -14.81174 -14.73734 -14.47529 -14.18422 -13.93368 -13.73895 -13.53154 -13.46726 -13.29714 -13.09264 -13.01888 -12.72636 -12.52102 -12.28379 -12.22824 -11.74535 -11.47611 -11.32248 -10.92149 -10.68624 -10.66290 -10.48764 -9.42948 -8.65475 -8.24882 -6.40435 0.85001 1.34664 1.37871 1.48093 1.61603 1.64882 2.28133 2.42218 2.74135 3.04397 3.51846 3.58071 3.71816 3.79921 3.97889 4.01851 4.20060 4.32391 4.37725 4.48005 4.55616 4.67749 4.72641 4.79525 4.83832 4.90181 4.94843 4.95749 4.98661 5.07171 5.17608 5.21141 5.30144 5.53485 5.82074 6.03054 6.67051 6.78036 7.25781 7.47834 8.82182 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038632 B = 0.004288 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.604941 B = 6528.597937 C = 6650.251218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.607 5.607 3 C 0.260 3.740 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.525 3.475 13 O -0.598 6.598 14 C -0.179 4.179 15 H 0.153 0.847 16 C -0.136 4.136 17 C -0.091 4.091 18 C -0.092 4.092 19 C -0.064 4.064 20 S -0.297 6.297 21 C -0.067 4.067 22 C -0.075 4.075 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.022 0.978 27 H -0.005 1.005 28 H 0.268 0.732 29 H 0.137 0.863 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.881 -18.232 4.449 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.337 5.337 3 C 0.139 3.861 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.314 3.686 13 O -0.480 6.480 14 C -0.200 4.200 15 H 0.170 0.830 16 C -0.174 4.174 17 C -0.092 4.092 18 C -0.131 4.131 19 C -0.212 4.212 20 S -0.071 6.071 21 C -0.215 4.215 22 C -0.114 4.114 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.040 0.960 27 H 0.013 0.987 28 H 0.076 0.924 29 H 0.155 0.845 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.146 0.854 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.436 -18.319 5.567 21.806 hybrid contribution 1.116 1.453 -1.884 2.628 sum -9.321 -16.866 3.683 19.619 Atomic orbital electron populations 1.21912 0.77953 1.03874 1.02367 1.48106 1.08395 1.06252 1.70949 1.18733 0.90943 0.80394 0.96053 1.21694 1.36982 1.06636 0.92945 0.92912 1.25886 0.94788 0.96367 1.02126 1.70056 1.38883 1.14793 1.33132 0.85387 0.78150 0.78216 0.78886 1.18648 1.20572 1.19770 1.20322 0.87124 0.85659 0.75482 1.90616 1.16550 1.88030 1.52810 1.22485 1.03412 0.89285 1.04830 0.82987 1.23179 0.98389 0.95895 0.99898 1.21634 0.99426 1.00124 0.88054 1.21299 0.99174 0.96990 0.95677 1.23227 0.97466 0.97961 1.02557 1.86824 1.35161 1.66659 1.18488 1.23447 1.03358 0.99992 0.94654 1.21333 0.93631 0.94305 1.02126 0.91538 0.91662 0.88673 0.96027 0.98652 0.92353 0.84540 0.90261 0.93209 0.90915 0.87858 0.89545 0.85410 0.88769 0.89796 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.46 10.26 127.77 1.31 3.77 16 2 N -0.61 -26.28 2.86 -851.14 -2.43 -28.71 16 3 C 0.26 14.39 5.16 85.63 0.44 14.84 16 4 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.42 5.46 84.66 0.46 0.89 16 7 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 8 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 9 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 12 C 0.52 22.05 6.27 87.66 0.55 22.60 16 13 O -0.60 -31.41 14.82 -3.02 -0.04 -31.45 16 14 C -0.18 -4.93 4.90 -11.50 -0.06 -4.99 16 15 H 0.15 3.17 6.55 -2.38 -0.02 3.15 16 16 C -0.14 -3.24 9.47 30.62 0.29 -2.95 16 17 C -0.09 -2.03 1.76 -52.15 -0.09 -2.13 16 18 C -0.09 -2.52 5.06 30.60 0.15 -2.36 16 19 C -0.06 -1.46 6.47 72.01 0.47 -1.00 16 20 S -0.30 -6.05 22.26 -56.49 -1.26 -7.30 16 21 C -0.07 -0.90 6.47 72.01 0.47 -0.44 16 22 C -0.08 -1.08 5.46 30.59 0.17 -0.91 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 25 H 0.09 2.14 6.04 -2.39 -0.01 2.13 16 26 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 27 H 0.00 -0.30 7.42 -2.39 -0.02 -0.31 16 28 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.08 2.38 7.67 -2.39 -0.02 2.37 16 31 H 0.05 1.79 6.21 -2.39 -0.01 1.77 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.00 8.08 -2.39 -0.02 0.98 16 Total: -1.00 -75.34 319.58 4.01 -71.32 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.03 Total: 9.85 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 4.40 Total: -4.37 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -2.15 Total: -85.37 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.04 Total: -31.45 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: -6.05 SS G_CDS: -1.26 Total: -7.30 kcal Total: -75.34 4.01 -71.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625791019.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.655 kcal (2) G-P(sol) polarization free energy of solvation -75.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds