Wall clock time and date at job start Mon Mar 30 2020 00:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21280 * 119.99396 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00292 * 180.02562 * 13 12 2 16 16 C 1.52998 * 109.47052 * 180.02562 * 15 13 12 17 17 C 1.52993 * 109.47327 * 179.97438 * 16 15 13 18 18 H 1.09007 * 110.53231 * 54.29667 * 17 16 15 19 19 N 1.47314 * 110.60112 * 291.46990 * 17 16 15 20 20 C 1.34859 * 106.44065 * 241.51953 * 19 17 16 21 21 O 1.21539 * 123.72737 * 179.97438 * 20 19 17 22 22 N 1.33791 * 112.50238 * 359.86105 * 20 19 17 23 23 C 1.34767 * 111.64378 * 0.09147 * 22 20 19 24 24 O 1.21230 * 127.15922 * 179.97438 * 23 22 20 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 29 29 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 30 30 H 1.08994 * 109.47030 * 299.99967 * 15 13 12 31 31 H 1.08993 * 109.47006 * 59.99994 * 15 13 12 32 32 H 1.09005 * 109.47365 * 300.00129 * 16 15 13 33 33 H 1.09006 * 109.47288 * 59.99740 * 16 15 13 34 34 H 0.96999 * 126.68674 * 61.43641 * 19 17 16 35 35 H 0.97002 * 124.17937 * 180.11978 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 6 2.7010 0.2543 -4.7588 17 6 3.2111 -0.4669 -6.0080 18 1 2.6086 -1.3523 -6.2110 19 7 4.6304 -0.8300 -5.8537 20 6 5.2988 -0.1796 -6.8278 21 8 6.5009 -0.2574 -6.9891 22 7 4.4913 0.5585 -7.5979 23 6 3.2064 0.4668 -7.2022 24 8 2.2464 1.0168 -7.6978 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7082 1.1609 3.4844 29 1 2.2490 -1.6318 -1.1526 30 1 3.6479 -1.1215 -3.3986 31 1 1.9760 -1.5507 -3.8325 32 1 1.7021 0.6473 -4.9481 33 1 3.3742 1.0759 -4.5137 34 1 5.0081 -1.4196 -5.1824 35 1 4.7934 1.0933 -8.3487 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633299517.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:15 Heat of formation + Delta-G solvation = -127.138062 kcal Electronic energy + Delta-G solvation = -20080.730058 eV Core-core repulsion = 16691.828341 eV Total energy + Delta-G solvation = -3388.901716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.33642 -40.51995 -39.71145 -37.55690 -36.72579 -35.54694 -34.28283 -33.17029 -30.95396 -28.58097 -27.31658 -24.86741 -23.75026 -22.71558 -22.14329 -21.00999 -19.39589 -18.86737 -17.98632 -17.68036 -17.40180 -17.08619 -16.78182 -16.68853 -16.30694 -15.82951 -15.39630 -15.24757 -14.74156 -14.33493 -14.14816 -13.67698 -13.53696 -12.98749 -12.91188 -12.83506 -12.67718 -12.26049 -12.18499 -12.09356 -11.96490 -11.48985 -11.36530 -11.06465 -10.69516 -10.54786 -10.48241 -9.68159 -8.16193 -6.33525 0.53176 1.44664 1.45427 1.46968 1.58389 1.92382 1.95616 2.17054 2.38081 2.69565 2.97849 3.14754 3.64520 3.90042 3.95815 4.32539 4.36600 4.45075 4.70943 4.81246 4.95486 4.98441 5.08070 5.13799 5.19901 5.47622 5.65342 5.73833 5.83462 5.87742 5.94680 6.13636 6.39002 6.76395 7.04856 7.13278 7.35528 7.66479 8.90165 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034472 B = 0.003464 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.048050 B = 8081.997298 C = 8625.154010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.267 3.733 3 H -0.005 1.005 4 C -0.544 4.544 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.971 3.029 9 H -0.257 1.257 10 H -0.286 1.286 11 H -0.280 1.280 12 N -0.706 5.706 13 C 0.490 3.510 14 O -0.608 6.608 15 C -0.124 4.124 16 C -0.099 4.099 17 C 0.107 3.893 18 H 0.176 0.824 19 N -0.703 5.703 20 C 0.704 3.296 21 O -0.585 6.585 22 N -0.673 5.673 23 C 0.532 3.468 24 O -0.495 6.495 25 H 0.012 0.988 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.264 0.736 29 H 0.408 0.592 30 H 0.122 0.878 31 H 0.137 0.863 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.453 0.547 35 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 -8.871 -16.998 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.163 3.837 3 H 0.012 0.988 4 C -0.582 4.582 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.796 3.204 9 H -0.181 1.181 10 H -0.213 1.213 11 H -0.206 1.206 12 N -0.355 5.355 13 C 0.278 3.722 14 O -0.491 6.491 15 C -0.163 4.163 16 C -0.138 4.138 17 C -0.001 4.001 18 H 0.193 0.807 19 N -0.369 5.369 20 C 0.404 3.596 21 O -0.462 6.462 22 N -0.344 5.344 23 C 0.318 3.682 24 O -0.365 6.365 25 H 0.031 0.969 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.243 0.757 30 H 0.140 0.860 31 H 0.155 0.845 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.301 0.699 35 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 4.785 -7.738 -17.167 19.429 hybrid contribution 0.454 -0.009 1.022 1.118 sum 5.239 -7.746 -16.145 18.658 Atomic orbital electron populations 1.21891 0.98435 0.99496 0.99435 1.18304 0.91061 0.91861 0.82434 0.98758 1.21617 1.32319 1.13484 0.90778 0.90561 1.25816 0.94947 0.95582 1.02441 1.70068 1.37186 1.24103 1.24451 0.85309 0.78046 0.78564 0.78476 1.18064 1.21264 1.20611 1.46271 1.65172 1.14350 1.09726 1.21572 0.77398 0.87150 0.86053 1.90666 1.53383 1.18902 1.86106 1.21656 1.05469 0.99416 0.89779 1.21420 1.03078 0.97855 0.91458 1.22210 0.84754 1.00066 0.93091 0.80730 1.45628 1.07246 1.50487 1.33584 1.16026 0.84433 0.78710 0.80455 1.91046 1.12781 1.68003 1.74323 1.44263 1.09661 1.46832 1.33610 1.21042 0.82003 0.80590 0.84520 1.90863 1.37852 1.47493 1.60328 0.96885 0.91912 0.93886 0.92680 0.75683 0.86031 0.84534 0.89729 0.92118 0.69903 0.71768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.56 9.26 71.98 0.67 -5.90 16 2 C 0.27 13.30 2.56 44.25 0.11 13.41 16 3 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 4 C -0.54 -27.69 8.73 25.60 0.22 -27.46 16 5 H 0.08 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -52.17 11.32 21.45 0.24 -51.92 16 8 Si 0.97 40.94 29.54 68.60 2.03 42.97 16 9 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 10 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 12 N -0.71 -26.00 5.07 -446.09 -2.26 -28.26 16 13 C 0.49 16.61 7.79 87.66 0.68 17.29 16 14 O -0.61 -27.49 15.64 -3.03 -0.05 -27.54 16 15 C -0.12 -2.10 5.62 29.85 0.17 -1.93 16 16 C -0.10 -1.78 4.26 30.59 0.13 -1.65 16 17 C 0.11 1.18 3.65 44.37 0.16 1.34 16 18 H 0.18 0.63 8.14 -2.38 -0.02 0.61 16 19 N -0.70 -7.77 6.04 -459.13 -2.77 -10.54 16 20 C 0.70 12.33 9.00 179.34 1.61 13.94 16 21 O -0.58 -14.97 18.04 -3.84 -0.07 -15.04 16 22 N -0.67 -9.92 5.70 -440.87 -2.51 -12.43 16 23 C 0.53 8.73 8.14 87.94 0.72 9.44 16 24 O -0.49 -11.53 18.02 -2.88 -0.05 -11.59 16 25 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 27 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.41 11.83 8.54 -92.71 -0.79 11.03 16 30 H 0.12 1.34 7.54 -2.39 -0.02 1.33 16 31 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.84 8.10 -2.38 -0.02 1.82 16 33 H 0.06 1.40 8.10 -2.38 -0.02 1.38 16 34 H 0.45 3.12 8.51 -92.71 -0.79 2.33 16 35 H 0.44 5.10 8.96 -92.71 -0.83 4.26 16 Total: -1.00 -78.25 307.03 -1.77 -80.03 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -1.25 Total: 14.76 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 4.93 Total: 19.57 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -7.31 Total: -103.16 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -0.17 Total: -54.16 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -78.25 -1.77 -80.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633299517.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.111 kcal (2) G-P(sol) polarization free energy of solvation -78.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds