Wall clock time and date at job start Mon Mar 30 2020 00:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.34781 * 119.99874 * 85.00543 * 12 2 1 14 14 O 1.21278 * 120.00033 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00101 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.47006 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47141 * 180.02562 * 16 15 13 18 18 H 1.09003 * 110.53439 * 307.82978 * 17 16 15 19 19 N 1.47316 * 110.59957 * 70.82351 * 17 16 15 20 20 C 1.34522 * 106.61405 * 118.52995 * 19 17 16 21 21 O 1.21547 * 123.76521 * 180.02562 * 20 19 17 22 22 N 1.33783 * 112.46504 * 0.02562 * 20 19 17 23 23 C 1.34768 * 111.64179 * 0.02562 * 22 20 19 24 24 O 1.21239 * 127.15950 * 180.02562 * 23 22 20 25 25 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00410 * 264.99761 * 12 2 1 30 30 H 1.09002 * 109.46880 * 299.99754 * 15 13 12 31 31 H 1.09003 * 109.46851 * 59.99965 * 15 13 12 32 32 H 1.09002 * 109.47281 * 299.99730 * 16 15 13 33 33 H 1.08997 * 109.47550 * 59.99777 * 16 15 13 34 34 H 0.96999 * 126.69142 * 298.51295 * 19 17 16 35 35 H 0.97000 * 124.18207 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1583 -2.4117 15 6 2.6499 -0.7286 -3.5875 16 6 2.7007 0.2543 -4.7588 17 6 3.2106 -0.4670 -6.0081 18 1 4.1469 -0.9832 -5.7962 19 7 2.1974 -1.4105 -6.5117 20 6 1.8735 -1.0014 -7.7516 21 8 1.0579 -1.5628 -8.4566 22 7 2.5492 0.0922 -8.1220 23 6 3.3888 0.5094 -7.1538 24 8 4.1309 1.4674 -7.1908 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9040 -0.5274 4.4375 29 1 2.2490 -1.6319 -1.1526 30 1 3.6492 -1.1205 -3.3979 31 1 1.9776 -1.5509 -3.8325 32 1 1.7012 0.6458 -4.9483 33 1 3.3726 1.0769 -4.5141 34 1 1.8348 -2.1772 -6.0411 35 1 2.4476 0.5306 -8.9812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633299518.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:17 Heat of formation + Delta-G solvation = -88.986032 kcal Electronic energy + Delta-G solvation = -20146.814131 eV Core-core repulsion = 16759.566811 eV Total energy + Delta-G solvation = -3387.247320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.67030 -39.26069 -38.92041 -36.74644 -35.28667 -34.69055 -32.58931 -32.28236 -30.08358 -27.83833 -25.24907 -23.97231 -23.00824 -21.73982 -20.93673 -19.65852 -18.70709 -17.43269 -17.27939 -16.90429 -16.29691 -16.00476 -15.80040 -15.51532 -15.39496 -14.56835 -14.40746 -14.18635 -13.42705 -13.21194 -12.86925 -12.74273 -12.25146 -12.12473 -11.82284 -11.41696 -11.33379 -11.14749 -10.86123 -10.73379 -10.59193 -10.23603 -9.87641 -9.76486 -9.28651 -9.24077 -8.80591 -8.23355 -6.25537 -4.28506 1.24300 2.07600 2.66203 2.77575 3.12082 3.20394 3.32685 3.36601 3.58404 3.80082 4.27660 4.39771 4.51788 4.78386 5.00583 5.04391 5.09718 5.26717 5.52965 5.65464 5.74032 5.94114 6.25725 6.32213 6.38099 6.50798 6.54738 6.80220 7.02483 7.12721 7.22271 7.46336 7.78394 8.08064 8.45754 8.70155 8.84993 9.35252 10.86587 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038816 B = 0.003510 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.175348 B = 7975.773918 C = 8116.650165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.235 3.765 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.701 5.701 13 C 0.501 3.499 14 O -0.556 6.556 15 C -0.140 4.140 16 C -0.103 4.103 17 C 0.091 3.909 18 H 0.134 0.866 19 N -0.720 5.720 20 C 0.705 3.295 21 O -0.547 6.547 22 N -0.681 5.681 23 C 0.530 3.470 24 O -0.462 6.462 25 H 0.047 0.953 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.268 0.732 29 H 0.396 0.604 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.442 0.558 35 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 -2.249 -19.307 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.349 5.349 13 C 0.286 3.714 14 O -0.435 6.435 15 C -0.181 4.181 16 C -0.142 4.142 17 C -0.018 4.018 18 H 0.151 0.849 19 N -0.385 5.385 20 C 0.404 3.596 21 O -0.421 6.421 22 N -0.352 5.352 23 C 0.315 3.685 24 O -0.330 6.330 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.229 0.771 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.287 0.713 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 1.879 -1.207 -19.417 19.545 hybrid contribution -0.702 0.062 0.182 0.727 sum 1.177 -1.145 -19.235 19.305 Atomic orbital electron populations 1.22447 0.99315 1.00821 0.99322 1.19108 0.90127 0.94706 0.82863 0.93360 1.21033 1.33383 1.14472 0.88558 0.90199 1.24836 0.95472 0.96702 0.95535 1.69864 1.44818 1.40108 0.98080 0.86870 0.80512 0.83584 0.77489 1.20306 1.22112 1.18677 1.46204 1.64961 1.13842 1.09858 1.20373 0.78661 0.87527 0.84811 1.90678 1.51399 1.16172 1.85267 1.21646 1.03588 0.99218 0.93629 1.21556 1.04222 0.98375 0.90083 1.22254 0.94726 0.90244 0.94535 0.84890 1.45610 1.44844 1.32241 1.15828 1.15852 0.80733 0.80224 0.82818 1.91069 1.35457 1.59192 1.56393 1.44331 1.40961 1.29236 1.20697 1.20802 0.78616 0.84740 0.84346 1.90874 1.36146 1.26065 1.79926 0.93450 0.94605 0.92835 0.92238 0.77113 0.88430 0.89224 0.89724 0.88144 0.71281 0.72559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 8.96 37.16 0.33 -3.14 16 2 C 0.24 5.38 2.15 -69.08 -0.15 5.23 16 3 H 0.05 1.23 6.63 -51.93 -0.34 0.89 16 4 C -0.54 -14.03 9.31 -34.44 -0.32 -14.35 16 5 H 0.08 2.19 7.98 -52.49 -0.42 1.77 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 8 Si 0.89 21.38 24.37 -169.99 -4.14 17.23 16 9 H -0.28 -6.46 6.87 56.52 0.39 -6.07 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 12 N -0.70 -12.57 5.07 -54.93 -0.28 -12.84 16 13 C 0.50 8.16 7.79 -10.98 -0.09 8.07 16 14 O -0.56 -11.40 15.64 5.56 0.09 -11.31 16 15 C -0.14 -1.33 5.64 -27.88 -0.16 -1.49 16 16 C -0.10 -0.96 4.25 -26.73 -0.11 -1.07 16 17 C 0.09 0.61 3.64 -68.20 -0.25 0.36 16 18 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 19 N -0.72 -4.72 6.06 -59.19 -0.36 -5.08 16 20 C 0.70 6.45 8.99 -88.03 -0.79 5.66 16 21 O -0.55 -7.04 18.04 5.32 0.10 -6.94 16 22 N -0.68 -5.19 5.70 -15.79 -0.09 -5.28 16 23 C 0.53 4.57 8.15 -10.56 -0.09 4.49 16 24 O -0.46 -5.42 18.02 5.59 0.10 -5.32 16 25 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.40 6.03 8.54 -40.82 -0.35 5.69 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.62 7.68 -51.93 -0.40 0.23 16 32 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.10 1.09 8.10 -51.93 -0.42 0.66 16 34 H 0.44 2.13 8.61 -40.82 -0.35 1.77 16 35 H 0.43 2.51 8.96 -40.82 -0.37 2.15 16 LS Contribution 300.48 15.07 4.53 4.53 Total: -1.00 -35.02 300.48 -5.11 -40.13 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.11 Total: 4.23 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.72 Total: 5.80 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.05 Total: -48.35 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.28 Total: -23.58 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.14 Total: 17.23 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.02 -5.11 -40.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633299518.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.852 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds