Wall clock time and date at job start Mon Mar 30 2020 00:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.34781 * 119.99874 * 85.00543 * 12 2 1 14 14 O 1.21278 * 120.00033 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00101 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.47006 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47141 * 180.02562 * 16 15 13 18 18 H 1.09003 * 110.53439 * 307.82978 * 17 16 15 19 19 N 1.47316 * 110.59957 * 70.82351 * 17 16 15 20 20 C 1.34522 * 106.61405 * 118.52995 * 19 17 16 21 21 O 1.21547 * 123.76521 * 180.02562 * 20 19 17 22 22 N 1.33783 * 112.46504 * 0.02562 * 20 19 17 23 23 C 1.34768 * 111.64179 * 0.02562 * 22 20 19 24 24 O 1.21239 * 127.15950 * 180.02562 * 23 22 20 25 25 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00410 * 264.99761 * 12 2 1 30 30 H 1.09002 * 109.46880 * 299.99754 * 15 13 12 31 31 H 1.09003 * 109.46851 * 59.99965 * 15 13 12 32 32 H 1.09002 * 109.47281 * 299.99730 * 16 15 13 33 33 H 1.08997 * 109.47550 * 59.99777 * 16 15 13 34 34 H 0.96999 * 126.69142 * 298.51295 * 19 17 16 35 35 H 0.97000 * 124.18207 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1583 -2.4117 15 6 2.6499 -0.7286 -3.5875 16 6 2.7007 0.2543 -4.7588 17 6 3.2106 -0.4670 -6.0081 18 1 4.1469 -0.9832 -5.7962 19 7 2.1974 -1.4105 -6.5117 20 6 1.8735 -1.0014 -7.7516 21 8 1.0579 -1.5628 -8.4566 22 7 2.5492 0.0922 -8.1220 23 6 3.3888 0.5094 -7.1538 24 8 4.1309 1.4674 -7.1908 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9040 -0.5274 4.4375 29 1 2.2490 -1.6319 -1.1526 30 1 3.6492 -1.1205 -3.3979 31 1 1.9776 -1.5509 -3.8325 32 1 1.7012 0.6458 -4.9483 33 1 3.3726 1.0769 -4.5141 34 1 1.8348 -2.1772 -6.0411 35 1 2.4476 0.5306 -8.9812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633299518.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:17 Heat of formation + Delta-G solvation = -120.544196 kcal Electronic energy + Delta-G solvation = -20148.182595 eV Core-core repulsion = 16759.566811 eV Total energy + Delta-G solvation = -3388.615785 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.35603 -40.61390 -39.71454 -37.57034 -36.84738 -35.54820 -34.36883 -33.26007 -31.66634 -28.68708 -27.20098 -24.92282 -23.75488 -22.72706 -22.14332 -21.10641 -19.40369 -19.05047 -17.97596 -17.76718 -17.59577 -17.26645 -16.79183 -16.67341 -16.34329 -15.93147 -15.36438 -15.27398 -14.88878 -14.74590 -14.16120 -13.99589 -13.89545 -13.36339 -13.14688 -12.90565 -12.75934 -12.19194 -12.12937 -11.96173 -11.61615 -11.48737 -11.37139 -11.25133 -10.86363 -10.67681 -10.49661 -9.81159 -8.37147 -6.42289 0.53426 1.27748 1.36526 1.45101 1.45431 1.85721 1.96143 2.16615 2.26816 2.54244 2.96780 2.99743 3.60891 3.89751 3.95011 4.29805 4.35289 4.41647 4.48849 4.59596 4.71712 4.76953 4.98779 5.03960 5.08359 5.19339 5.35540 5.46263 5.70776 5.83336 5.88475 6.16085 6.39003 6.60714 6.95411 7.13685 7.21954 7.55068 8.77970 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038816 B = 0.003510 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.175348 B = 7975.773918 C = 8116.650165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.239 3.761 3 H 0.020 0.980 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.029 3.971 7 N -0.934 5.934 8 Si 0.937 3.063 9 H -0.261 1.261 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.702 5.702 13 C 0.496 3.504 14 O -0.602 6.602 15 C -0.126 4.126 16 C -0.099 4.099 17 C 0.106 3.894 18 H 0.174 0.826 19 N -0.702 5.702 20 C 0.705 3.295 21 O -0.586 6.586 22 N -0.674 5.674 23 C 0.531 3.469 24 O -0.495 6.495 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.269 0.731 29 H 0.410 0.590 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.453 0.547 35 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 -3.158 -20.562 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.134 3.866 3 H 0.038 0.962 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.171 4.171 7 N -0.573 5.573 8 Si 0.765 3.235 9 H -0.187 1.187 10 H -0.222 1.222 11 H -0.189 1.189 12 N -0.351 5.351 13 C 0.284 3.716 14 O -0.484 6.484 15 C -0.165 4.165 16 C -0.138 4.138 17 C -0.002 4.002 18 H 0.191 0.809 19 N -0.368 5.368 20 C 0.404 3.596 21 O -0.462 6.462 22 N -0.344 5.344 23 C 0.318 3.682 24 O -0.366 6.366 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.246 0.754 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.301 0.699 35 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 1.834 -2.156 -20.687 20.880 hybrid contribution -0.632 0.337 0.530 0.892 sum 1.201 -1.819 -20.157 20.274 Atomic orbital electron populations 1.22338 0.98062 1.01656 0.99235 1.18720 0.91045 0.93176 0.83680 0.96248 1.21294 1.32155 1.13560 0.89869 0.92142 1.25536 0.96858 0.99174 0.95521 1.69970 1.46756 1.41922 0.98643 0.86035 0.79823 0.80583 0.77069 1.18730 1.22179 1.18888 1.46040 1.65393 1.14512 1.09154 1.21520 0.77166 0.87120 0.85796 1.90664 1.53133 1.18542 1.86047 1.21674 1.05983 0.99181 0.89693 1.21427 1.02999 0.98236 0.91119 1.22216 0.95984 0.89700 0.92313 0.80946 1.45546 1.44289 1.32118 1.14809 1.15937 0.80295 0.80119 0.83251 1.91052 1.37202 1.60352 1.57643 1.44276 1.40319 1.28801 1.21028 1.21049 0.77917 0.84354 0.84870 1.90869 1.37577 1.27535 1.80614 0.94491 0.93670 0.91507 0.92127 0.75409 0.84913 0.85605 0.91539 0.89780 0.69913 0.71800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.43 8.96 71.98 0.65 -5.79 16 2 C 0.24 10.73 2.15 44.25 0.10 10.82 16 3 H 0.02 1.00 6.63 -2.39 -0.02 0.98 16 4 C -0.53 -27.70 9.31 25.60 0.24 -27.46 16 5 H 0.06 3.32 7.98 -2.91 -0.02 3.30 16 6 C 0.03 1.59 5.45 84.65 0.46 2.05 16 7 N -0.93 -54.80 13.96 21.45 0.30 -54.50 16 8 Si 0.94 44.00 24.37 68.60 1.67 45.67 16 9 H -0.26 -11.57 6.87 99.48 0.68 -10.88 16 10 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 11 H -0.26 -12.37 6.53 99.48 0.65 -11.72 16 12 N -0.70 -23.86 5.07 -446.09 -2.26 -26.12 16 13 C 0.50 15.06 7.79 87.66 0.68 15.74 16 14 O -0.60 -24.22 15.64 -3.02 -0.05 -24.26 16 15 C -0.13 -1.87 5.64 29.85 0.17 -1.70 16 16 C -0.10 -1.56 4.25 30.59 0.13 -1.43 16 17 C 0.11 1.03 3.64 44.37 0.16 1.20 16 18 H 0.17 0.51 8.14 -2.39 -0.02 0.49 16 19 N -0.70 -6.76 6.06 -459.60 -2.79 -9.54 16 20 C 0.70 11.42 8.99 179.44 1.61 13.03 16 21 O -0.59 -14.27 18.04 -3.86 -0.07 -14.34 16 22 N -0.67 -9.15 5.70 -441.13 -2.52 -11.66 16 23 C 0.53 8.12 8.15 87.94 0.72 8.83 16 24 O -0.50 -11.07 18.02 -2.90 -0.05 -11.12 16 25 H 0.04 1.60 3.27 -2.39 -0.01 1.59 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 29 H 0.41 11.49 8.54 -92.71 -0.79 10.69 16 30 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.13 1.06 7.68 -2.39 -0.02 1.04 16 32 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 33 H 0.08 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.45 2.44 8.61 -92.71 -0.80 1.65 16 35 H 0.44 4.64 8.96 -92.71 -0.83 3.81 16 Total: -1.00 -77.95 300.48 -2.18 -80.14 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -1.33 Total: 10.45 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 4.91 Total: 15.30 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -7.26 Total: -101.82 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: -0.17 Total: -49.73 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.67 Total: 45.67 kcal Total: -77.95 -2.18 -80.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633299518.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.407 kcal (2) G-P(sol) polarization free energy of solvation -77.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds