Wall clock time and date at job start Mon Mar 30 2020 00:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.47030 * 2 1 4 4 C 1.50699 * 109.47399 * 239.99761 * 2 1 3 5 5 H 1.08004 * 119.99894 * 245.45357 * 4 2 1 6 6 C 1.37877 * 119.99684 * 65.46087 * 4 2 1 7 7 N 1.31506 * 120.00300 * 9.55518 * 6 4 2 8 8 Si 1.86805 * 119.99591 * 189.55976 * 6 4 2 9 9 H 1.48498 * 109.47321 * 84.99031 * 8 6 4 10 10 H 1.48500 * 109.46803 * 204.99207 * 8 6 4 11 11 H 1.48500 * 109.47183 * 324.99178 * 8 6 4 12 12 N 1.46507 * 109.47295 * 119.99353 * 2 1 3 13 13 C 1.34776 * 120.00172 * 275.00274 * 12 2 1 14 14 O 1.21280 * 119.99840 * 0.02562 * 13 12 2 15 15 C 1.50693 * 119.99946 * 180.27396 * 13 12 2 16 16 C 1.52994 * 109.47385 * 179.72672 * 15 13 12 17 17 C 1.52997 * 109.47570 * 179.97438 * 16 15 13 18 18 H 1.08998 * 110.53984 * 302.17659 * 17 16 15 19 19 N 1.47318 * 110.59846 * 65.00079 * 17 16 15 20 20 C 1.34526 * 106.62113 * 118.52358 * 19 17 16 21 21 O 1.21541 * 123.77281 * 179.97438 * 20 19 17 22 22 N 1.33794 * 112.45762 * 0.02562 * 20 19 17 23 23 C 1.34774 * 111.64444 * 359.97438 * 22 20 19 24 24 O 1.21236 * 127.15553 * 180.02562 * 23 22 20 25 25 H 1.09005 * 109.46836 * 183.68232 * 1 2 3 26 26 H 1.09001 * 109.47443 * 303.67926 * 1 2 3 27 27 H 1.09003 * 109.47437 * 63.68436 * 1 2 3 28 28 H 0.97003 * 120.00290 * 179.97438 * 7 6 4 29 29 H 0.96998 * 119.99575 * 95.00628 * 12 2 1 30 30 H 1.09010 * 109.47142 * 299.72755 * 15 13 12 31 31 H 1.09002 * 109.47192 * 59.72457 * 15 13 12 32 32 H 1.09003 * 109.47240 * 300.00496 * 16 15 13 33 33 H 1.09002 * 109.47131 * 59.99748 * 16 15 13 34 34 H 0.96998 * 126.68459 * 298.50025 * 19 17 16 35 35 H 0.96998 * 124.18044 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5787 -1.6370 -1.1337 6 6 1.7946 -0.1774 -2.4795 7 7 1.2992 1.0355 -2.5935 8 14 2.1761 -1.1782 -4.0101 9 1 1.0242 -2.0612 -4.3239 10 1 2.4227 -0.2616 -5.1520 11 1 3.3846 -2.0074 -3.7708 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8581 1.1586 2.4117 15 6 2.6553 -0.7268 3.5861 16 6 2.7119 0.2576 4.7559 17 6 3.2273 -0.4621 6.0038 18 1 2.5890 -1.3117 6.2462 19 7 4.6209 -0.8992 5.8115 20 6 5.3547 -0.2673 6.7454 21 8 6.5561 -0.4048 6.8677 22 7 4.6140 0.5286 7.5251 23 6 3.3128 0.4961 7.1753 24 8 2.4006 1.1064 7.6903 25 1 -0.3633 -1.0256 0.0660 26 1 -0.3634 0.5699 0.8552 27 1 -0.3634 0.4556 -0.9212 28 1 1.1323 1.4106 -3.4724 29 1 2.2491 -1.6316 1.1527 30 1 1.9840 -1.5488 3.8352 31 1 3.6537 -1.1190 3.3926 32 1 3.3830 1.0796 4.5068 33 1 1.7135 0.6498 4.9494 34 1 4.9460 -1.5216 5.1423 35 1 4.9695 1.0630 8.2523 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633299519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:19 Heat of formation + Delta-G solvation = -98.301536 kcal Electronic energy + Delta-G solvation = -20086.254595 eV Core-core repulsion = 16698.603325 eV Total energy + Delta-G solvation = -3387.651271 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.61907 -39.06957 -38.86134 -36.68772 -35.09153 -34.57845 -32.51103 -32.19153 -29.38834 -27.63431 -25.26990 -23.87395 -22.93963 -21.67885 -20.86405 -19.45888 -18.64601 -17.29843 -17.24166 -16.85204 -16.17380 -15.82691 -15.61611 -15.45459 -15.11486 -14.52326 -14.29286 -14.13501 -13.43539 -12.94860 -12.61544 -12.45216 -12.03161 -11.82735 -11.33081 -11.20050 -11.07571 -11.00958 -10.80502 -10.68508 -10.53411 -10.41119 -10.31543 -9.81737 -9.17914 -9.08302 -8.54927 -7.99969 -6.18697 -4.24686 1.29285 2.12656 2.71481 2.83052 3.21965 3.28058 3.29729 3.31192 3.64665 3.93732 4.30990 4.47953 4.62108 4.86280 5.07648 5.11739 5.15477 5.35502 5.66852 5.70540 5.82068 6.02296 6.43381 6.59890 6.70585 6.83784 7.03128 7.07320 7.36819 7.48918 7.62492 7.79550 7.83584 8.01944 8.59979 8.74332 9.05616 9.41646 10.89748 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034069 B = 0.003480 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.661107 B = 8043.471585 C = 8554.876207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.261 3.739 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.069 3.931 7 N -0.880 5.880 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.708 5.708 13 C 0.499 3.501 14 O -0.554 6.554 15 C -0.141 4.141 16 C -0.103 4.103 17 C 0.092 3.908 18 H 0.133 0.867 19 N -0.720 5.720 20 C 0.705 3.295 21 O -0.547 6.547 22 N -0.681 5.681 23 C 0.530 3.470 24 O -0.463 6.463 25 H 0.028 0.972 26 H 0.019 0.981 27 H 0.072 0.928 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.442 0.558 35 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.582 -6.414 16.581 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.159 3.841 3 H 0.073 0.927 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.517 5.517 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.356 5.356 13 C 0.284 3.716 14 O -0.433 6.433 15 C -0.181 4.181 16 C -0.142 4.142 17 C -0.017 4.017 18 H 0.150 0.850 19 N -0.385 5.385 20 C 0.404 3.596 21 O -0.421 6.421 22 N -0.352 5.352 23 C 0.315 3.685 24 O -0.331 6.331 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.287 0.713 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 3.388 -5.193 16.728 17.840 hybrid contribution 0.561 -1.038 -0.939 1.508 sum 3.948 -6.231 15.789 17.427 Atomic orbital electron populations 1.22011 0.98841 0.98569 1.00563 1.18763 0.90584 0.94584 0.80130 0.92694 1.21159 1.37351 1.08703 0.90463 0.92083 1.24892 0.94928 0.94614 0.99078 1.69977 1.43690 1.13727 1.24298 0.86522 0.78721 0.79949 0.82269 1.20406 1.21146 1.19896 1.46523 1.64948 1.13538 1.10586 1.20303 0.78972 0.87581 0.84788 1.90684 1.51397 1.16106 1.85139 1.21647 1.03029 0.99393 0.94078 1.21539 1.04214 0.98142 0.90260 1.22258 0.85343 0.98434 0.95683 0.85004 1.45623 1.07737 1.49049 1.36123 1.15855 0.85003 0.78873 0.79897 1.91065 1.11055 1.67050 1.72939 1.44333 1.10532 1.45158 1.35202 1.20801 0.82128 0.81580 0.83950 1.90868 1.41216 1.44009 1.57003 0.95264 0.96143 0.90898 0.92498 0.77928 0.88819 0.89384 0.89767 0.88201 0.71270 0.72579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.36 37.15 0.35 -2.99 16 2 C 0.26 6.39 2.42 -69.08 -0.17 6.22 16 3 H 0.06 1.59 7.52 -51.92 -0.39 1.19 16 4 C -0.54 -13.84 8.66 -34.44 -0.30 -14.14 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.82 5.17 -17.82 -0.09 1.73 16 7 N -0.88 -24.65 12.16 55.43 0.67 -23.97 16 8 Si 0.90 20.19 29.55 -169.99 -5.02 15.16 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 12 N -0.71 -13.45 5.07 -54.93 -0.28 -13.73 16 13 C 0.50 8.74 7.79 -10.99 -0.09 8.66 16 14 O -0.55 -12.26 15.64 5.56 0.09 -12.17 16 15 C -0.14 -1.46 5.60 -27.89 -0.16 -1.62 16 16 C -0.10 -1.04 4.28 -26.74 -0.11 -1.15 16 17 C 0.09 0.66 3.70 -68.20 -0.25 0.41 16 18 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 19 N -0.72 -5.20 5.94 -59.19 -0.35 -5.55 16 20 C 0.70 6.88 8.99 -88.02 -0.79 6.09 16 21 O -0.55 -7.37 18.04 5.33 0.10 -7.27 16 22 N -0.68 -5.55 5.70 -15.79 -0.09 -5.64 16 23 C 0.53 4.84 8.14 -10.55 -0.09 4.76 16 24 O -0.46 -5.63 18.02 5.60 0.10 -5.52 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 1.88 6.83 -51.93 -0.35 1.52 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.39 6.15 8.53 -40.82 -0.35 5.81 16 30 H 0.09 0.72 8.14 -51.92 -0.42 0.29 16 31 H 0.09 0.72 7.36 -51.93 -0.38 0.34 16 32 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 33 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 34 H 0.44 2.45 8.37 -40.82 -0.34 2.11 16 35 H 0.43 2.72 8.96 -40.82 -0.37 2.36 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -34.33 307.96 -6.10 -40.42 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.26 Total: 5.68 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -1.70 Total: 7.96 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.05 Total: -48.89 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: 0.28 Total: -24.97 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.33 -6.10 -40.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633299519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.880 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds