Wall clock time and date at job start Mon Mar 30 2020 00:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.47030 * 2 1 4 4 C 1.50699 * 109.47399 * 239.99761 * 2 1 3 5 5 H 1.08004 * 119.99894 * 245.45357 * 4 2 1 6 6 C 1.37877 * 119.99684 * 65.46087 * 4 2 1 7 7 N 1.31506 * 120.00300 * 9.55518 * 6 4 2 8 8 Si 1.86805 * 119.99591 * 189.55976 * 6 4 2 9 9 H 1.48498 * 109.47321 * 84.99031 * 8 6 4 10 10 H 1.48500 * 109.46803 * 204.99207 * 8 6 4 11 11 H 1.48500 * 109.47183 * 324.99178 * 8 6 4 12 12 N 1.46507 * 109.47295 * 119.99353 * 2 1 3 13 13 C 1.34776 * 120.00172 * 275.00274 * 12 2 1 14 14 O 1.21280 * 119.99840 * 0.02562 * 13 12 2 15 15 C 1.50693 * 119.99946 * 180.27396 * 13 12 2 16 16 C 1.52994 * 109.47385 * 179.72672 * 15 13 12 17 17 C 1.52997 * 109.47570 * 179.97438 * 16 15 13 18 18 H 1.08998 * 110.53984 * 302.17659 * 17 16 15 19 19 N 1.47318 * 110.59846 * 65.00079 * 17 16 15 20 20 C 1.34526 * 106.62113 * 118.52358 * 19 17 16 21 21 O 1.21541 * 123.77281 * 179.97438 * 20 19 17 22 22 N 1.33794 * 112.45762 * 0.02562 * 20 19 17 23 23 C 1.34774 * 111.64444 * 359.97438 * 22 20 19 24 24 O 1.21236 * 127.15553 * 180.02562 * 23 22 20 25 25 H 1.09005 * 109.46836 * 183.68232 * 1 2 3 26 26 H 1.09001 * 109.47443 * 303.67926 * 1 2 3 27 27 H 1.09003 * 109.47437 * 63.68436 * 1 2 3 28 28 H 0.97003 * 120.00290 * 179.97438 * 7 6 4 29 29 H 0.96998 * 119.99575 * 95.00628 * 12 2 1 30 30 H 1.09010 * 109.47142 * 299.72755 * 15 13 12 31 31 H 1.09002 * 109.47192 * 59.72457 * 15 13 12 32 32 H 1.09003 * 109.47240 * 300.00496 * 16 15 13 33 33 H 1.09002 * 109.47131 * 59.99748 * 16 15 13 34 34 H 0.96998 * 126.68459 * 298.50025 * 19 17 16 35 35 H 0.96998 * 124.18044 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5787 -1.6370 -1.1337 6 6 1.7946 -0.1774 -2.4795 7 7 1.2992 1.0355 -2.5935 8 14 2.1761 -1.1782 -4.0101 9 1 1.0242 -2.0612 -4.3239 10 1 2.4227 -0.2616 -5.1520 11 1 3.3846 -2.0074 -3.7708 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8581 1.1586 2.4117 15 6 2.6553 -0.7268 3.5861 16 6 2.7119 0.2576 4.7559 17 6 3.2273 -0.4621 6.0038 18 1 2.5890 -1.3117 6.2462 19 7 4.6209 -0.8992 5.8115 20 6 5.3547 -0.2673 6.7454 21 8 6.5561 -0.4048 6.8677 22 7 4.6140 0.5286 7.5251 23 6 3.3128 0.4961 7.1753 24 8 2.4006 1.1064 7.6903 25 1 -0.3633 -1.0256 0.0660 26 1 -0.3634 0.5699 0.8552 27 1 -0.3634 0.4556 -0.9212 28 1 1.1323 1.4106 -3.4724 29 1 2.2491 -1.6316 1.1527 30 1 1.9840 -1.5488 3.8352 31 1 3.6537 -1.1190 3.3926 32 1 3.3830 1.0796 4.5068 33 1 1.7135 0.6498 4.9494 34 1 4.9460 -1.5216 5.1423 35 1 4.9695 1.0630 8.2523 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633299519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:19 Heat of formation + Delta-G solvation = -128.169511 kcal Electronic energy + Delta-G solvation = -20087.549768 eV Core-core repulsion = 16698.603325 eV Total energy + Delta-G solvation = -3388.946443 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.35599 -40.51619 -39.71197 -37.56047 -36.70283 -35.54792 -34.27327 -33.17014 -31.03949 -28.61738 -27.27495 -24.87479 -23.75606 -22.72954 -22.14848 -21.01001 -19.39378 -18.85941 -18.00916 -17.66620 -17.39527 -17.08359 -16.77790 -16.66513 -16.31507 -15.82460 -15.40851 -15.24355 -14.74084 -14.32787 -14.15341 -13.66733 -13.61191 -12.99168 -12.94232 -12.84297 -12.64541 -12.33231 -12.18022 -12.10857 -11.97156 -11.48682 -11.36013 -11.13052 -10.64008 -10.53921 -10.49061 -9.68919 -8.19078 -6.32403 0.53539 1.45156 1.46372 1.47240 1.56673 1.92675 1.96350 2.17409 2.38517 2.69207 2.97794 3.13689 3.64587 3.90533 3.95577 4.32811 4.36897 4.45050 4.70538 4.78486 4.92124 4.98318 5.07572 5.08855 5.19953 5.46686 5.64560 5.66783 5.83078 5.88366 5.94361 6.06895 6.38976 6.77858 7.05099 7.13531 7.35531 7.66902 8.90049 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034069 B = 0.003480 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.661107 B = 8043.471585 C = 8554.876207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.265 3.735 3 H -0.002 1.002 4 C -0.546 4.546 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.968 3.032 9 H -0.270 1.270 10 H -0.291 1.291 11 H -0.261 1.261 12 N -0.706 5.706 13 C 0.490 3.510 14 O -0.608 6.608 15 C -0.124 4.124 16 C -0.099 4.099 17 C 0.108 3.892 18 H 0.177 0.823 19 N -0.703 5.703 20 C 0.704 3.296 21 O -0.586 6.586 22 N -0.674 5.674 23 C 0.531 3.469 24 O -0.495 6.495 25 H 0.050 0.950 26 H 0.016 0.984 27 H 0.044 0.956 28 H 0.264 0.736 29 H 0.408 0.592 30 H 0.138 0.862 31 H 0.120 0.880 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.453 0.547 35 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.016 -9.425 17.130 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.161 3.839 3 H 0.016 0.984 4 C -0.585 4.585 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.217 1.217 11 H -0.185 1.185 12 N -0.355 5.355 13 C 0.278 3.722 14 O -0.490 6.490 15 C -0.163 4.163 16 C -0.138 4.138 17 C 0.000 4.000 18 H 0.194 0.806 19 N -0.369 5.369 20 C 0.404 3.596 21 O -0.463 6.463 22 N -0.344 5.344 23 C 0.318 3.682 24 O -0.366 6.366 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.243 0.757 30 H 0.156 0.844 31 H 0.138 0.862 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.301 0.699 35 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 3.836 -8.265 17.293 19.546 hybrid contribution 0.425 -0.032 -1.067 1.149 sum 4.261 -8.297 16.225 18.715 Atomic orbital electron populations 1.21830 0.98480 0.99422 0.98925 1.18314 0.90864 0.92249 0.82427 0.98357 1.21552 1.36962 1.09023 0.90915 0.90513 1.25812 0.94853 0.95425 1.02491 1.70136 1.45271 1.15621 1.24860 0.85422 0.79052 0.78292 0.77963 1.19555 1.21724 1.18530 1.46260 1.65192 1.14358 1.09682 1.21561 0.77433 0.87129 0.86046 1.90669 1.53406 1.18884 1.86068 1.21650 1.05349 0.99483 0.89851 1.21413 1.03095 0.97804 0.91485 1.22225 0.85618 0.98960 0.93244 0.80646 1.45567 1.07364 1.48362 1.35559 1.15947 0.84560 0.78865 0.80259 1.91048 1.12769 1.68335 1.74100 1.44275 1.10259 1.44755 1.35139 1.21047 0.81774 0.81217 0.84136 1.90864 1.42099 1.45333 1.58267 0.93080 0.96470 0.93676 0.92689 0.75670 0.84386 0.86198 0.92314 0.89543 0.69931 0.71798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 9.36 71.98 0.67 -5.43 16 2 C 0.27 13.14 2.42 44.24 0.11 13.25 16 3 H 0.00 -0.09 7.52 -2.38 -0.02 -0.11 16 4 C -0.55 -27.80 8.66 25.60 0.22 -27.58 16 5 H 0.08 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.01 0.76 5.17 84.66 0.44 1.20 16 7 N -0.92 -52.93 12.16 21.45 0.26 -52.67 16 8 Si 0.97 40.95 29.55 68.60 2.03 42.98 16 9 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 12 N -0.71 -25.84 5.07 -446.09 -2.26 -28.10 16 13 C 0.49 16.58 7.79 87.65 0.68 17.26 16 14 O -0.61 -27.50 15.64 -3.03 -0.05 -27.55 16 15 C -0.12 -2.09 5.60 29.84 0.17 -1.93 16 16 C -0.10 -1.77 4.28 30.59 0.13 -1.64 16 17 C 0.11 1.18 3.70 44.37 0.16 1.35 16 18 H 0.18 0.60 8.14 -2.39 -0.02 0.58 16 19 N -0.70 -7.78 5.94 -459.60 -2.73 -10.51 16 20 C 0.70 12.40 8.99 179.44 1.61 14.01 16 21 O -0.59 -15.08 18.04 -3.84 -0.07 -15.15 16 22 N -0.67 -10.00 5.70 -441.10 -2.52 -12.52 16 23 C 0.53 8.75 8.14 87.94 0.72 9.46 16 24 O -0.49 -11.55 18.02 -2.89 -0.05 -11.61 16 25 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.04 2.38 6.83 -2.39 -0.02 2.36 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.41 11.69 8.53 -92.71 -0.79 10.90 16 30 H 0.14 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.12 1.36 7.36 -2.39 -0.02 1.34 16 32 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 33 H 0.09 1.85 8.10 -2.39 -0.02 1.83 16 34 H 0.45 3.13 8.37 -92.71 -0.78 2.35 16 35 H 0.44 5.16 8.96 -92.71 -0.83 4.33 16 Total: -1.00 -78.98 307.96 -1.71 -80.69 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -1.24 Total: 14.49 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 4.92 Total: 19.96 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -7.25 Total: -103.80 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -0.17 Total: -54.31 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -78.98 -1.71 -80.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633299519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.479 kcal (2) G-P(sol) polarization free energy of solvation -78.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds