Wall clock time and date at job start Mon Mar 30 2020 00:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.50700 * 109.47132 * 240.00180 * 2 1 3 5 5 H 1.07995 * 119.99741 * 239.99774 * 4 2 1 6 6 C 1.37875 * 119.99973 * 59.99939 * 4 2 1 7 7 N 1.31512 * 120.00332 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99735 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47297 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47136 * 120.00166 * 8 6 4 11 11 H 1.48499 * 109.47166 * 239.99464 * 8 6 4 12 12 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 13 13 C 1.34777 * 120.00199 * 275.00460 * 12 2 1 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 2 16 16 C 1.52996 * 109.47159 * 179.72352 * 15 13 12 17 17 C 1.52994 * 109.47118 * 179.97438 * 16 15 13 18 18 H 1.08996 * 110.53656 * 55.70092 * 17 16 15 19 19 N 1.47310 * 110.60127 * 292.86752 * 17 16 15 20 20 C 1.34522 * 106.62310 * 241.47529 * 19 17 16 21 21 O 1.21536 * 123.77583 * 179.97438 * 20 19 17 22 22 N 1.33794 * 112.45551 * 359.97438 * 20 19 17 23 23 C 1.35115 * 111.68737 * 359.91187 * 22 20 19 24 24 O 1.21242 * 127.33663 * 180.09939 * 23 22 20 25 25 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 27 27 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 28 28 H 0.97002 * 120.00028 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99484 * 94.99557 * 12 2 1 30 30 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 31 31 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 32 32 H 1.09004 * 109.47066 * 299.99797 * 16 15 13 33 33 H 1.09000 * 109.47234 * 59.99288 * 16 15 13 34 34 H 0.97001 * 126.68904 * 61.43697 * 19 17 16 35 35 H 0.97010 * 124.17625 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1474 -2.2862 -3.6038 10 1 1.1678 -1.5865 -4.8166 11 1 3.1472 -0.1856 -4.8161 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1586 2.4115 15 6 2.6553 -0.7271 3.5861 16 6 2.7119 0.2573 4.7559 17 6 3.2273 -0.4626 6.0037 18 1 4.1931 -0.9273 5.8055 19 7 2.2527 -1.4677 6.4619 20 6 1.8766 -1.1021 7.7007 21 8 1.0741 -1.7196 8.3729 22 7 2.4846 0.0172 8.1100 23 6 3.3286 0.4988 7.1713 24 8 4.0211 1.4913 7.2448 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.7089 1.1614 -3.4844 29 1 2.2490 -1.6317 1.1526 30 1 1.9840 -1.5491 3.8351 31 1 3.6536 -1.1193 3.3925 32 1 3.3832 1.0792 4.5069 33 1 1.7135 0.6495 4.9494 34 1 1.9423 -2.2418 5.9667 35 1 2.3389 0.4313 8.9751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633299520.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:21 Heat of formation + Delta-G solvation = -97.554797 kcal Electronic energy + Delta-G solvation = -20083.845618 eV Core-core repulsion = 16696.226728 eV Total energy + Delta-G solvation = -3387.618890 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.59655 -39.07199 -38.86518 -36.69269 -35.09601 -34.57733 -32.52873 -32.20554 -29.30543 -27.60033 -25.30481 -23.86693 -22.93349 -21.67206 -20.84502 -19.45016 -18.65687 -17.29793 -17.22945 -16.85276 -16.19138 -15.85165 -15.63976 -15.34088 -15.21774 -14.53557 -14.35456 -14.02531 -13.49475 -12.87840 -12.69557 -12.43997 -12.04804 -11.71985 -11.33261 -11.19130 -11.10690 -10.97636 -10.77436 -10.68839 -10.54069 -10.34692 -10.28586 -9.82498 -9.13284 -9.07617 -8.60053 -7.97941 -6.16667 -4.26337 1.28419 2.11874 2.70514 2.81854 3.20496 3.27942 3.29720 3.31332 3.64480 3.93558 4.30109 4.47712 4.62185 4.86009 5.07270 5.11082 5.16015 5.35827 5.66942 5.70414 5.81786 6.02093 6.42403 6.59070 6.77396 6.91160 7.06513 7.10217 7.39897 7.50160 7.64474 7.83014 7.86280 8.10510 8.59650 8.72898 9.05515 9.41561 10.89315 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039435 B = 0.003327 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.857030 B = 8415.225084 C = 8562.416921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.709 5.709 13 C 0.499 3.501 14 O -0.555 6.555 15 C -0.141 4.141 16 C -0.103 4.103 17 C 0.091 3.909 18 H 0.133 0.867 19 N -0.720 5.720 20 C 0.705 3.295 21 O -0.548 6.548 22 N -0.683 5.683 23 C 0.530 3.470 24 O -0.461 6.461 25 H 0.026 0.974 26 H 0.014 0.986 27 H 0.090 0.910 28 H 0.264 0.736 29 H 0.389 0.611 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.442 0.558 35 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 -5.878 16.329 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.356 5.356 13 C 0.283 3.717 14 O -0.434 6.434 15 C -0.181 4.181 16 C -0.142 4.142 17 C -0.018 4.018 18 H 0.150 0.850 19 N -0.385 5.385 20 C 0.404 3.596 21 O -0.422 6.422 22 N -0.354 5.354 23 C 0.316 3.684 24 O -0.329 6.329 25 H 0.045 0.955 26 H 0.033 0.967 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.221 0.779 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.287 0.713 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 4.543 -4.704 16.497 17.746 hybrid contribution 0.171 -1.101 -0.764 1.351 sum 4.715 -5.806 15.733 17.420 Atomic orbital electron populations 1.22075 0.98475 0.99078 1.00915 1.18757 0.91030 0.94031 0.80086 0.93348 1.21246 1.32479 1.13242 0.90324 0.92018 1.24898 0.94793 0.94941 0.99118 1.69910 1.35854 1.22426 1.23834 0.86391 0.78617 0.79506 0.82558 1.19736 1.20872 1.20852 1.46539 1.64918 1.13550 1.10598 1.20308 0.78969 0.87588 0.84793 1.90682 1.51437 1.16129 1.85161 1.21651 1.03290 0.99205 0.93991 1.21543 1.04170 0.98363 0.90086 1.22253 0.95675 0.89097 0.94738 0.84994 1.45612 1.46748 1.29831 1.16328 1.15843 0.80606 0.80473 0.82661 1.91063 1.35726 1.56852 1.58549 1.44414 1.42858 1.27043 1.21062 1.20881 0.78078 0.84956 0.84491 1.90872 1.38589 1.23892 1.79540 0.95494 0.96700 0.89156 0.92584 0.77904 0.89468 0.88731 0.88163 0.89784 0.71300 0.72609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.22 16 2 C 0.26 6.45 2.56 -69.08 -0.18 6.27 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.53 -13.73 8.73 -34.44 -0.30 -14.03 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -24.47 11.32 55.43 0.63 -23.85 16 8 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.71 -13.51 5.07 -54.93 -0.28 -13.78 16 13 C 0.50 8.75 7.79 -10.98 -0.09 8.67 16 14 O -0.55 -12.27 15.64 5.55 0.09 -12.19 16 15 C -0.14 -1.46 5.61 -27.88 -0.16 -1.62 16 16 C -0.10 -1.04 4.27 -26.74 -0.11 -1.15 16 17 C 0.09 0.66 3.67 -68.21 -0.25 0.41 16 18 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 19 N -0.72 -5.11 5.98 -59.20 -0.35 -5.47 16 20 C 0.71 6.79 9.00 -88.02 -0.79 6.00 16 21 O -0.55 -7.28 18.04 5.33 0.10 -7.18 16 22 N -0.68 -5.50 5.72 -15.71 -0.09 -5.59 16 23 C 0.53 4.83 8.17 -10.40 -0.08 4.75 16 24 O -0.46 -5.61 18.02 5.59 0.10 -5.51 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.39 6.20 8.54 -40.82 -0.35 5.86 16 30 H 0.09 0.69 7.47 -51.93 -0.39 0.31 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16 33 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 34 H 0.44 2.37 8.45 -40.82 -0.34 2.03 16 35 H 0.43 2.69 8.96 -40.82 -0.37 2.32 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -34.12 306.89 -6.15 -40.27 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.23 Total: 5.83 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -1.71 Total: 7.71 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.09 Total: -48.69 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: 0.28 Total: -24.88 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.12 -6.15 -40.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633299520.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.289 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds