Wall clock time and date at job start Mon Mar 30 2020 00:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.50700 * 109.47132 * 240.00180 * 2 1 3 5 5 H 1.07995 * 119.99741 * 239.99774 * 4 2 1 6 6 C 1.37875 * 119.99973 * 59.99939 * 4 2 1 7 7 N 1.31512 * 120.00332 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99735 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47297 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47136 * 120.00166 * 8 6 4 11 11 H 1.48499 * 109.47166 * 239.99464 * 8 6 4 12 12 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 13 13 C 1.34777 * 120.00199 * 275.00460 * 12 2 1 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 2 16 16 C 1.52996 * 109.47159 * 179.72352 * 15 13 12 17 17 C 1.52994 * 109.47118 * 179.97438 * 16 15 13 18 18 H 1.08996 * 110.53656 * 55.70092 * 17 16 15 19 19 N 1.47310 * 110.60127 * 292.86752 * 17 16 15 20 20 C 1.34522 * 106.62310 * 241.47529 * 19 17 16 21 21 O 1.21536 * 123.77583 * 179.97438 * 20 19 17 22 22 N 1.33794 * 112.45551 * 359.97438 * 20 19 17 23 23 C 1.35115 * 111.68737 * 359.91187 * 22 20 19 24 24 O 1.21242 * 127.33663 * 180.09939 * 23 22 20 25 25 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 27 27 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 28 28 H 0.97002 * 120.00028 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99484 * 94.99557 * 12 2 1 30 30 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 31 31 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 32 32 H 1.09004 * 109.47066 * 299.99797 * 16 15 13 33 33 H 1.09000 * 109.47234 * 59.99288 * 16 15 13 34 34 H 0.97001 * 126.68904 * 61.43697 * 19 17 16 35 35 H 0.97010 * 124.17625 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1474 -2.2862 -3.6038 10 1 1.1678 -1.5865 -4.8166 11 1 3.1472 -0.1856 -4.8161 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1586 2.4115 15 6 2.6553 -0.7271 3.5861 16 6 2.7119 0.2573 4.7559 17 6 3.2273 -0.4626 6.0037 18 1 4.1931 -0.9273 5.8055 19 7 2.2527 -1.4677 6.4619 20 6 1.8766 -1.1021 7.7007 21 8 1.0741 -1.7196 8.3729 22 7 2.4846 0.0172 8.1100 23 6 3.3286 0.4988 7.1713 24 8 4.0211 1.4913 7.2448 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.7089 1.1614 -3.4844 29 1 2.2490 -1.6317 1.1526 30 1 1.9840 -1.5491 3.8351 31 1 3.6536 -1.1193 3.3925 32 1 3.3832 1.0792 4.5069 33 1 1.7135 0.6495 4.9494 34 1 1.9423 -2.2418 5.9667 35 1 2.3389 0.4313 8.9751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633299520.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:20 Heat of formation + Delta-G solvation = -127.132088 kcal Electronic energy + Delta-G solvation = -20085.128185 eV Core-core repulsion = 16696.226728 eV Total energy + Delta-G solvation = -3388.901457 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.32774 -40.52080 -39.71302 -37.55999 -36.72634 -35.53196 -34.28203 -33.17458 -30.96183 -28.59972 -27.31962 -24.86628 -23.73617 -22.71655 -22.14652 -21.00969 -19.39828 -18.86334 -17.98335 -17.67537 -17.39946 -17.10729 -16.76853 -16.66109 -16.29871 -15.93330 -15.31496 -15.18430 -14.84306 -14.41150 -13.91127 -13.87461 -13.49172 -13.00740 -12.90224 -12.82282 -12.69087 -12.26662 -12.16827 -12.09986 -11.96719 -11.48250 -11.36374 -11.06630 -10.69537 -10.54818 -10.48837 -9.68426 -8.15949 -6.33302 0.53047 1.45189 1.45914 1.47339 1.58888 1.92140 1.96231 2.16607 2.38289 2.69332 2.97672 3.15054 3.64465 3.90016 3.95420 4.32727 4.36149 4.44512 4.70480 4.80297 4.93939 4.98361 5.08687 5.13098 5.19679 5.47251 5.65352 5.73013 5.83378 5.88147 5.94419 6.13196 6.38672 6.76613 7.04753 7.14030 7.35746 7.66352 8.90460 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039435 B = 0.003327 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.857030 B = 8415.225084 C = 8562.416921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.267 3.733 3 H -0.004 1.004 4 C -0.543 4.543 5 H 0.077 0.923 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.256 1.256 10 H -0.281 1.281 11 H -0.286 1.286 12 N -0.706 5.706 13 C 0.490 3.510 14 O -0.608 6.608 15 C -0.124 4.124 16 C -0.099 4.099 17 C 0.107 3.893 18 H 0.175 0.825 19 N -0.702 5.702 20 C 0.705 3.295 21 O -0.586 6.586 22 N -0.675 5.675 23 C 0.532 3.468 24 O -0.494 6.494 25 H 0.041 0.959 26 H 0.010 0.990 27 H 0.062 0.938 28 H 0.264 0.736 29 H 0.408 0.592 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.453 0.547 35 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.220 -8.556 16.665 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.163 3.837 3 H 0.014 0.986 4 C -0.581 4.581 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.180 1.180 10 H -0.207 1.207 11 H -0.212 1.212 12 N -0.355 5.355 13 C 0.278 3.722 14 O -0.490 6.490 15 C -0.163 4.163 16 C -0.138 4.138 17 C -0.001 4.001 18 H 0.192 0.808 19 N -0.368 5.368 20 C 0.404 3.596 21 O -0.462 6.462 22 N -0.346 5.346 23 C 0.319 3.681 24 O -0.364 6.364 25 H 0.060 0.940 26 H 0.029 0.971 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.243 0.757 30 H 0.141 0.859 31 H 0.153 0.847 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.301 0.699 35 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 5.926 -7.440 16.850 19.350 hybrid contribution -0.270 -0.199 -0.830 0.896 sum 5.656 -7.639 16.020 18.628 Atomic orbital electron populations 1.21894 0.98591 0.99414 0.99357 1.18303 0.90938 0.91950 0.82462 0.98628 1.21611 1.32307 1.13491 0.90735 0.90501 1.25823 0.94951 0.95584 1.02469 1.70069 1.37235 1.24090 1.24453 0.85300 0.78026 0.78575 0.78438 1.18010 1.20711 1.21209 1.46269 1.65169 1.14359 1.09713 1.21568 0.77417 0.87147 0.86034 1.90667 1.53406 1.18897 1.86078 1.21654 1.05863 0.99051 0.89759 1.21413 1.02761 0.98292 0.91320 1.22203 0.97138 0.88462 0.92314 0.80813 1.45546 1.46123 1.29760 1.15355 1.15927 0.80176 0.80344 0.83115 1.91047 1.37450 1.57995 1.59751 1.44354 1.42211 1.26596 1.21400 1.21118 0.77400 0.84558 0.85029 1.90867 1.39990 1.25330 1.80240 0.93975 0.97064 0.91887 0.92686 0.75677 0.85875 0.84711 0.89799 0.92020 0.69916 0.71817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.60 9.26 71.98 0.67 -5.93 16 2 C 0.27 13.30 2.56 44.24 0.11 13.41 16 3 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 4 C -0.54 -27.59 8.73 25.60 0.22 -27.37 16 5 H 0.08 3.58 7.74 -2.91 -0.02 3.56 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -52.16 11.32 21.45 0.24 -51.92 16 8 Si 0.97 40.83 29.54 68.60 2.03 42.86 16 9 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.71 -25.99 5.07 -446.10 -2.26 -28.25 16 13 C 0.49 16.61 7.79 87.66 0.68 17.29 16 14 O -0.61 -27.48 15.64 -3.04 -0.05 -27.52 16 15 C -0.12 -2.10 5.61 29.85 0.17 -1.93 16 16 C -0.10 -1.77 4.27 30.59 0.13 -1.64 16 17 C 0.11 1.18 3.67 44.37 0.16 1.34 16 18 H 0.17 0.66 8.14 -2.39 -0.02 0.64 16 19 N -0.70 -7.56 5.98 -459.63 -2.75 -10.31 16 20 C 0.71 12.16 9.00 179.44 1.61 13.77 16 21 O -0.59 -14.81 18.04 -3.83 -0.07 -14.88 16 22 N -0.67 -9.87 5.72 -440.67 -2.52 -12.39 16 23 C 0.53 8.74 8.17 87.89 0.72 9.46 16 24 O -0.49 -11.57 18.02 -2.91 -0.05 -11.62 16 25 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.06 3.46 6.07 -2.38 -0.01 3.44 16 28 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.41 11.82 8.54 -92.71 -0.79 11.02 16 30 H 0.12 1.30 7.47 -2.38 -0.02 1.29 16 31 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.85 8.10 -2.38 -0.02 1.83 16 33 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 34 H 0.45 2.93 8.45 -92.71 -0.78 2.14 16 35 H 0.44 5.06 8.96 -92.70 -0.83 4.23 16 Total: -1.00 -78.13 306.89 -1.75 -79.87 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -1.24 Total: 14.71 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 4.93 Total: 19.45 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -7.29 Total: -102.87 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: -0.17 Total: -54.02 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -78.13 -1.75 -79.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633299520.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.258 kcal (2) G-P(sol) polarization free energy of solvation -78.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds