Wall clock time and date at job start Mon Mar 30 2020 01:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 119.99832 * 2 1 4 4 H 1.48495 * 109.47062 * 239.99835 * 3 2 1 5 5 H 1.48500 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46971 * 119.99801 * 3 2 1 7 7 C 1.37874 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99933 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99945 * 179.97438 * 10 9 7 12 12 O 1.21586 * 119.99654 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99978 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99828 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47070 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.47050 * 305.00134 * 15 14 13 17 17 O 1.42906 * 109.46752 * 64.99887 * 15 14 13 18 18 C 1.52997 * 109.47164 * 185.00131 * 15 14 13 19 19 N 1.46495 * 109.46909 * 175.00315 * 18 15 14 20 20 C 1.35311 * 125.87040 * 125.00120 * 19 18 15 21 21 C 1.35350 * 106.17649 * 179.97438 * 20 19 18 22 22 N 1.33762 * 106.49907 * 359.97438 * 21 20 19 23 23 N 1.28639 * 108.88375 * 359.73510 * 22 21 20 24 24 H 0.96998 * 120.00226 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47577 * 59.99762 * 9 7 2 26 26 H 1.09004 * 109.47434 * 299.99370 * 9 7 2 27 27 H 0.96994 * 120.00144 * 0.02562 * 10 9 7 28 28 H 0.97001 * 119.99767 * 0.02562 * 13 11 10 29 29 H 1.09004 * 109.47055 * 60.00770 * 14 13 11 30 30 H 1.08992 * 109.47401 * 300.00078 * 14 13 11 31 31 H 0.96701 * 113.99492 * 60.00095 * 17 15 14 32 32 H 1.09001 * 109.47096 * 295.00066 * 18 15 14 33 33 H 1.08994 * 109.47065 * 55.00225 * 18 15 14 34 34 H 1.08001 * 126.91024 * 0.02562 * 20 19 18 35 35 H 1.08001 * 126.75039 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5586 -5.1055 0.0011 13 7 2.6298 -5.9077 0.0005 14 6 2.1415 -7.2889 0.0005 15 6 3.3316 -8.2506 0.0005 16 1 3.9846 -8.0205 -0.8413 17 8 4.0599 -8.1070 1.2216 18 6 2.8250 -9.6888 -0.1252 19 7 3.9662 -10.5996 -0.2452 20 6 4.2144 -11.6682 0.5469 21 6 5.3603 -12.2214 0.0856 22 7 5.7517 -11.4744 -0.9527 23 7 4.9012 -10.5250 -1.1266 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 3.1568 -3.4353 0.0009 28 1 3.5835 -5.7304 0.0002 29 1 1.5357 -7.4601 -0.8893 30 1 1.5363 -7.4603 0.8907 31 1 3.5397 -8.2967 2.0144 32 1 2.2446 -9.9483 0.7601 33 1 2.1957 -9.7762 -1.0108 34 1 3.6176 -12.0112 1.3791 35 1 5.8604 -13.0942 0.4786 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634809449.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:15 Heat of formation + Delta-G solvation = 17.942443 kcal Electronic energy + Delta-G solvation = -19591.118769 eV Core-core repulsion = 16240.800967 eV Total energy + Delta-G solvation = -3350.317802 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.51613 -39.52688 -38.22351 -34.71689 -34.42862 -33.89666 -32.32184 -31.32840 -30.53869 -27.60656 -26.13370 -23.33207 -22.83600 -22.20803 -21.71267 -20.20995 -18.34188 -18.18594 -17.03909 -16.73826 -16.31938 -15.82613 -15.45980 -15.21326 -14.81391 -14.60727 -14.57855 -14.09870 -13.58616 -13.21439 -12.97297 -12.72006 -12.05691 -11.96655 -11.76505 -11.66763 -11.18617 -11.02953 -10.96076 -10.87459 -10.31399 -10.25534 -9.67504 -9.50651 -9.39696 -8.90022 -8.70954 -7.80406 -6.16225 -4.22916 1.29906 1.92073 2.32614 3.15200 3.25974 3.30844 3.33102 3.69274 3.86943 3.95770 4.15002 4.19170 4.33124 4.41119 4.65605 4.70544 4.88767 4.92735 5.09595 5.19901 5.33950 5.49089 5.61262 5.85887 6.20381 6.69339 7.05713 7.09248 7.47162 7.52293 7.54495 7.87107 8.01850 8.23230 8.74110 8.89560 9.27911 9.45554 10.93965 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.050793 B = 0.002748 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.125332 B =10187.284401 C =10502.289184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.727 5.727 11 C 0.694 3.306 12 O -0.603 6.603 13 N -0.752 5.752 14 C 0.116 3.884 15 C 0.085 3.915 16 H 0.124 0.876 17 O -0.547 6.547 18 C 0.084 3.916 19 N -0.282 5.282 20 C -0.049 4.049 21 C -0.054 4.054 22 N -0.273 5.273 23 N -0.080 5.080 24 H 0.266 0.734 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.388 0.612 28 H 0.397 0.603 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.377 0.623 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.189 0.811 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.789 -22.823 3.196 24.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.379 5.379 11 C 0.393 3.607 12 O -0.482 6.482 13 N -0.411 5.411 14 C -0.011 4.011 15 C 0.024 3.976 16 H 0.141 0.859 17 O -0.353 6.353 18 C -0.039 4.039 19 N -0.076 5.076 20 C -0.200 4.200 21 C -0.211 4.211 22 N -0.138 5.138 23 N -0.060 5.060 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.220 0.780 28 H 0.231 0.769 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.225 0.775 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.206 0.794 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 6.482 -21.890 1.573 22.883 hybrid contribution 0.207 0.291 1.407 1.451 sum 6.690 -21.598 2.980 22.806 Atomic orbital electron populations 1.69962 1.06097 1.27411 1.48869 1.24942 0.94922 0.99412 0.94724 0.86464 0.79398 0.82269 0.78702 1.20063 1.21072 1.20073 1.21190 0.93270 0.90429 1.53254 0.91961 1.18989 0.87747 0.81043 0.97604 1.45727 1.10934 1.04344 1.76904 1.16120 0.85064 0.81095 0.78395 1.90872 1.14217 1.84276 1.58881 1.44933 1.09289 1.04255 1.82603 1.21557 0.94747 0.81427 1.03333 1.22530 0.94802 0.90494 0.89777 0.85851 1.86717 1.41226 1.92175 1.15149 1.22840 0.85064 0.89467 1.06479 1.47294 1.19299 1.20204 1.20764 1.23672 1.02005 0.92480 1.01812 1.23618 0.96589 1.03462 0.97436 1.75134 1.20059 1.02270 1.16385 1.78310 0.96114 1.18977 1.12642 0.92392 0.95713 0.95734 0.78021 0.76889 0.90513 0.91185 0.77475 0.86702 0.86638 0.79359 0.79445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.12 5.43 -5.19 -0.03 7.09 16 10 N -0.73 -15.42 5.55 -66.41 -0.37 -15.79 16 11 C 0.69 13.82 8.57 -86.91 -0.74 13.07 16 12 O -0.60 -14.48 16.34 5.29 0.09 -14.40 16 13 N -0.75 -10.39 5.51 -65.22 -0.36 -10.75 16 14 C 0.12 1.16 5.31 -4.04 -0.02 1.14 16 15 C 0.08 0.64 3.08 -26.73 -0.08 0.56 16 16 H 0.12 1.14 8.01 -51.93 -0.42 0.73 16 17 O -0.55 -4.59 13.23 -35.23 -0.47 -5.06 16 18 C 0.08 0.44 6.09 -4.05 -0.02 0.41 16 19 N -0.28 -2.33 3.38 -61.27 -0.21 -2.54 16 20 C -0.05 -0.32 11.57 -17.05 -0.20 -0.51 16 21 C -0.05 -0.45 12.05 -17.74 -0.21 -0.66 16 22 N -0.27 -3.38 12.41 30.23 0.38 -3.00 16 23 N -0.08 -0.97 12.84 60.35 0.77 -0.19 16 24 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.39 7.09 8.33 -40.82 -0.34 6.75 16 28 H 0.40 4.77 8.49 -40.82 -0.35 4.43 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.38 1.82 9.05 45.56 0.41 2.24 16 32 H 0.11 0.22 8.07 -51.93 -0.42 -0.20 16 33 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.19 0.42 8.06 -52.49 -0.42 0.00 16 35 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 314.92 15.07 4.75 4.75 Total: -1.00 -37.62 314.92 -5.04 -42.65 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -3.60 Total: 6.15 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -1.73 Total: 7.66 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.95 Total: -57.63 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.38 Total: -19.46 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -37.62 -5.04 -42.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634809449.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.596 kcal (2) G-P(sol) polarization free energy of solvation -37.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds