Wall clock time and date at job start Mon Mar 30 2020 01:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 119.99832 * 2 1 4 4 H 1.48495 * 109.47062 * 239.99835 * 3 2 1 5 5 H 1.48500 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46971 * 119.99801 * 3 2 1 7 7 C 1.37874 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99933 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47117 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99945 * 179.97438 * 10 9 7 12 12 O 1.21586 * 119.99654 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99978 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99828 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47070 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.47050 * 305.00134 * 15 14 13 17 17 O 1.42906 * 109.46752 * 64.99887 * 15 14 13 18 18 C 1.52997 * 109.47164 * 185.00131 * 15 14 13 19 19 N 1.46495 * 109.46909 * 175.00315 * 18 15 14 20 20 C 1.35311 * 125.87040 * 125.00120 * 19 18 15 21 21 C 1.35350 * 106.17649 * 179.97438 * 20 19 18 22 22 N 1.33762 * 106.49907 * 359.97438 * 21 20 19 23 23 N 1.28639 * 108.88375 * 359.73510 * 22 21 20 24 24 H 0.96998 * 120.00226 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47577 * 59.99762 * 9 7 2 26 26 H 1.09004 * 109.47434 * 299.99370 * 9 7 2 27 27 H 0.96994 * 120.00144 * 0.02562 * 10 9 7 28 28 H 0.97001 * 119.99767 * 0.02562 * 13 11 10 29 29 H 1.09004 * 109.47055 * 60.00770 * 14 13 11 30 30 H 1.08992 * 109.47401 * 300.00078 * 14 13 11 31 31 H 0.96701 * 113.99492 * 60.00095 * 17 15 14 32 32 H 1.09001 * 109.47096 * 295.00066 * 18 15 14 33 33 H 1.08994 * 109.47065 * 55.00225 * 18 15 14 34 34 H 1.08001 * 126.91024 * 0.02562 * 20 19 18 35 35 H 1.08001 * 126.75039 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5586 -5.1055 0.0011 13 7 2.6298 -5.9077 0.0005 14 6 2.1415 -7.2889 0.0005 15 6 3.3316 -8.2506 0.0005 16 1 3.9846 -8.0205 -0.8413 17 8 4.0599 -8.1070 1.2216 18 6 2.8250 -9.6888 -0.1252 19 7 3.9662 -10.5996 -0.2452 20 6 4.2144 -11.6682 0.5469 21 6 5.3603 -12.2214 0.0856 22 7 5.7517 -11.4744 -0.9527 23 7 4.9012 -10.5250 -1.1266 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 3.1568 -3.4353 0.0009 28 1 3.5835 -5.7304 0.0002 29 1 1.5357 -7.4601 -0.8893 30 1 1.5363 -7.4603 0.8907 31 1 3.5397 -8.2967 2.0144 32 1 2.2446 -9.9483 0.7601 33 1 2.1957 -9.7762 -1.0108 34 1 3.6176 -12.0112 1.3791 35 1 5.8604 -13.0942 0.4786 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634809449.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:15 Heat of formation + Delta-G solvation = -16.290527 kcal Electronic energy + Delta-G solvation = -19592.603222 eV Core-core repulsion = 16240.800967 eV Total energy + Delta-G solvation = -3351.802255 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.12813 -40.95223 -39.10073 -36.20347 -35.39821 -35.22101 -34.29658 -31.92343 -31.39147 -29.30102 -27.25989 -24.70485 -23.79884 -23.20229 -22.38739 -21.75830 -19.81386 -18.99746 -18.07226 -17.62580 -17.38089 -17.25118 -16.63082 -16.36730 -16.16337 -15.72095 -15.37627 -14.99713 -14.87468 -14.63837 -14.23897 -14.00562 -13.56587 -13.27482 -12.91718 -12.68714 -12.67746 -12.32245 -12.23161 -11.81317 -11.68117 -11.49492 -11.30432 -10.84551 -10.79205 -10.29005 -10.26929 -9.59141 -8.28240 -6.44412 0.72401 1.40177 1.44112 1.47674 1.55736 1.69109 1.91768 2.23918 2.39684 3.06634 3.22006 3.27533 3.55616 3.64137 3.78380 3.82765 4.12770 4.34581 4.35975 4.39244 4.62808 4.73796 4.96189 5.08366 5.28070 5.32347 5.47357 5.50073 5.66377 5.71574 5.85704 6.22843 6.66707 6.67229 7.24361 7.28807 7.58290 7.71053 8.83739 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.050793 B = 0.002748 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.125332 B =10187.284401 C =10502.289184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.286 3.714 10 N -0.725 5.725 11 C 0.692 3.308 12 O -0.646 6.646 13 N -0.731 5.731 14 C 0.112 3.888 15 C 0.103 3.897 16 H 0.103 0.897 17 O -0.564 6.564 18 C 0.082 3.918 19 N -0.280 5.280 20 C -0.029 4.029 21 C -0.072 4.072 22 N -0.319 5.319 23 N -0.129 5.129 24 H 0.269 0.731 25 H -0.014 1.014 26 H -0.012 1.012 27 H 0.403 0.597 28 H 0.409 0.591 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.394 0.606 32 H 0.158 0.842 33 H 0.127 0.873 34 H 0.237 0.763 35 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.834 -23.663 4.400 25.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.099 0.901 9 C 0.163 3.837 10 N -0.379 5.379 11 C 0.392 3.608 12 O -0.529 6.529 13 N -0.388 5.388 14 C -0.013 4.013 15 C 0.042 3.958 16 H 0.121 0.879 17 O -0.372 6.372 18 C -0.039 4.039 19 N -0.074 5.074 20 C -0.181 4.181 21 C -0.230 4.230 22 N -0.184 5.184 23 N -0.108 5.108 24 H 0.078 0.922 25 H 0.004 0.996 26 H 0.006 0.994 27 H 0.238 0.762 28 H 0.245 0.755 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.245 0.755 32 H 0.176 0.824 33 H 0.145 0.855 34 H 0.253 0.747 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 7.598 -22.781 2.769 24.174 hybrid contribution -0.154 0.416 1.095 1.181 sum 7.444 -22.365 3.864 23.886 Atomic orbital electron populations 1.70121 1.08168 1.28634 1.49867 1.26033 0.95791 1.03763 0.93883 0.85219 0.77923 0.76716 0.79420 1.18834 1.20982 1.18719 1.21573 0.94257 0.90633 1.53022 0.90055 1.18400 0.88045 0.83240 0.94053 1.45337 1.10891 1.04045 1.77612 1.16261 0.85067 0.81534 0.77940 1.90839 1.16440 1.84931 1.60711 1.44765 1.09075 1.04524 1.80455 1.21827 0.96060 0.79469 1.03913 1.22201 0.93033 0.91444 0.89138 0.87866 1.86694 1.42110 1.92386 1.16024 1.23058 0.84345 0.87328 1.09162 1.47516 1.19005 1.20731 1.20130 1.24421 1.01259 0.90838 1.01576 1.24241 0.97670 1.04185 0.96857 1.75059 1.21389 1.03446 1.18495 1.78246 0.97683 1.20085 1.14801 0.92203 0.99563 0.99437 0.76164 0.75509 0.90531 0.90033 0.75545 0.82384 0.85544 0.74660 0.76957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 2 C 0.01 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.98 42.40 29.54 68.60 2.03 44.43 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.56 -30.45 9.28 25.60 0.24 -30.21 16 8 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 9 C 0.29 15.78 5.43 85.63 0.46 16.25 16 10 N -0.73 -31.06 5.55 -482.28 -2.68 -33.74 16 11 C 0.69 27.67 8.57 179.05 1.53 29.20 16 12 O -0.65 -31.67 16.34 -3.99 -0.07 -31.74 16 13 N -0.73 -19.39 5.51 -478.53 -2.64 -22.03 16 14 C 0.11 2.05 5.31 86.38 0.46 2.51 16 15 C 0.10 1.34 3.08 30.60 0.09 1.44 16 16 H 0.10 1.83 8.01 -2.39 -0.02 1.81 16 17 O -0.56 -8.07 13.23 -148.98 -1.97 -10.04 16 18 C 0.08 0.60 6.09 86.38 0.53 1.13 16 19 N -0.28 -4.00 3.38 -347.76 -1.18 -5.17 16 20 C -0.03 -0.28 11.57 83.49 0.97 0.68 16 21 C -0.07 -1.07 12.05 83.73 1.01 -0.06 16 22 N -0.32 -7.85 12.41 -58.26 -0.72 -8.58 16 23 N -0.13 -3.05 12.84 37.02 0.48 -2.58 16 24 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 25 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 26 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 27 H 0.40 14.49 8.33 -92.71 -0.77 13.72 16 28 H 0.41 9.22 8.49 -92.71 -0.79 8.44 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.39 2.49 9.05 -74.06 -0.67 1.82 16 32 H 0.16 -0.19 8.07 -2.39 -0.02 -0.21 16 33 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.24 -0.26 8.06 -2.91 -0.02 -0.28 16 35 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -86.00 314.92 -1.79 -87.79 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -1.08 Total: 15.62 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: 5.75 Total: 21.67 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -6.45 Total: -127.74 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -2.04 Total: -41.78 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -86.00 -1.79 -87.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634809449.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.502 kcal (2) G-P(sol) polarization free energy of solvation -85.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds