Wall clock time and date at job start Mon Mar 30 2020 01:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99410 * 2 1 4 4 H 1.48504 * 109.47120 * 239.99972 * 3 2 1 5 5 H 1.48504 * 109.47524 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47077 * 119.99940 * 3 2 1 7 7 C 1.37869 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99828 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00027 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46923 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99854 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99953 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00097 * 180.27545 * 11 10 9 14 14 C 1.46500 * 120.00431 * 179.72742 * 13 11 10 15 15 C 1.52999 * 109.47528 * 180.02562 * 14 13 11 16 16 H 1.08993 * 109.47533 * 59.99613 * 15 14 13 17 17 O 1.42905 * 109.46482 * 299.99525 * 15 14 13 18 18 C 1.52998 * 109.47306 * 180.02562 * 15 14 13 19 19 N 1.46500 * 109.47207 * 184.99697 * 18 15 14 20 20 C 1.35314 * 125.86899 * 125.00001 * 19 18 15 21 21 C 1.35345 * 106.17234 * 179.97438 * 20 19 18 22 22 N 1.33774 * 106.49954 * 0.02562 * 21 20 19 23 23 N 1.28626 * 108.88337 * 359.73510 * 22 21 20 24 24 H 0.96994 * 120.00789 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47477 * 59.99650 * 9 7 2 26 26 H 1.08997 * 109.47150 * 299.99545 * 9 7 2 27 27 H 0.97000 * 120.00410 * 0.02562 * 10 9 7 28 28 H 0.97000 * 120.00112 * 359.73180 * 13 11 10 29 29 H 1.09009 * 109.46712 * 300.00517 * 14 13 11 30 30 H 1.08998 * 109.47207 * 59.99494 * 14 13 11 31 31 H 0.96695 * 114.00265 * 300.00290 * 17 15 14 32 32 H 1.09002 * 109.46913 * 304.99845 * 18 15 14 33 33 H 1.09009 * 109.47190 * 64.99312 * 18 15 14 34 34 H 1.08003 * 126.91048 * 0.02562 * 20 19 18 35 35 H 1.08003 * 126.74567 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7541 -4.8833 0.0011 12 8 0.5586 -5.1055 0.0011 13 7 2.6299 -5.9076 0.0067 14 6 2.1417 -7.2889 0.0133 15 6 3.3317 -8.2505 0.0194 16 1 3.9364 -8.0746 0.9090 17 8 4.1266 -8.0318 -1.1479 18 6 2.8218 -9.6930 0.0256 19 7 3.9562 -10.6114 0.1518 20 6 4.1007 -11.5676 1.0982 21 6 5.2824 -12.1758 0.8423 22 7 5.7966 -11.5695 -0.2336 23 7 4.9843 -10.6508 -0.6217 24 1 -0.4851 0.8399 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 3.1569 -3.4353 0.0009 28 1 3.5836 -5.7303 0.0064 29 1 1.5355 -7.4557 0.9038 30 1 1.5366 -7.4646 -0.8761 31 1 3.6519 -8.1706 -1.9787 32 1 2.1439 -9.8350 0.8673 33 1 2.2923 -9.8952 -0.9055 34 1 3.4113 -11.7994 1.8966 35 1 5.7239 -12.9899 1.3980 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634809450.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:17 Heat of formation + Delta-G solvation = 19.340264 kcal Electronic energy + Delta-G solvation = -19608.597492 eV Core-core repulsion = 16258.340303 eV Total energy + Delta-G solvation = -3350.257188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.49237 -39.50970 -38.14564 -34.67722 -34.38421 -33.86662 -32.32108 -31.27376 -30.53532 -27.59939 -26.11560 -23.20899 -22.84793 -22.19245 -21.75085 -20.20681 -18.29151 -18.16652 -17.23051 -16.39806 -16.22690 -15.82723 -15.49097 -15.20573 -14.80066 -14.64512 -14.54658 -13.95710 -13.57052 -13.26539 -13.01246 -12.63429 -11.97162 -11.96818 -11.74938 -11.63562 -11.15569 -10.99286 -10.87920 -10.84066 -10.31661 -10.22998 -9.65602 -9.50769 -9.39981 -8.89854 -8.71136 -7.80629 -6.16506 -4.23246 1.31838 1.93743 2.34861 3.14753 3.25698 3.30604 3.32802 3.77910 3.87432 4.03274 4.12349 4.26944 4.32442 4.40894 4.58894 4.73856 4.90407 4.93975 5.09809 5.19592 5.37413 5.48396 5.59829 5.86355 6.23036 6.69943 7.06110 7.25323 7.46911 7.52158 7.54150 7.87097 8.01644 8.27773 8.73881 8.89449 9.27796 9.45295 10.93687 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.051069 B = 0.002750 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.140971 B =10180.526766 C =10511.192435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.727 5.727 11 C 0.693 3.307 12 O -0.603 6.603 13 N -0.752 5.752 14 C 0.115 3.885 15 C 0.088 3.912 16 H 0.111 0.889 17 O -0.536 6.536 18 C 0.083 3.917 19 N -0.289 5.289 20 C -0.057 4.057 21 C -0.054 4.054 22 N -0.279 5.279 23 N -0.058 5.058 24 H 0.266 0.734 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.388 0.612 28 H 0.398 0.602 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.380 0.620 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.190 0.810 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.533 -22.308 2.607 23.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.379 5.379 11 C 0.393 3.607 12 O -0.483 6.483 13 N -0.410 5.410 14 C -0.012 4.012 15 C 0.027 3.973 16 H 0.129 0.871 17 O -0.341 6.341 18 C -0.040 4.040 19 N -0.083 5.083 20 C -0.208 4.208 21 C -0.211 4.211 22 N -0.145 5.145 23 N -0.038 5.038 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.220 0.780 28 H 0.232 0.768 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.228 0.772 32 H 0.138 0.862 33 H 0.127 0.873 34 H 0.207 0.793 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 6.346 -21.569 1.812 22.556 hybrid contribution 0.089 0.445 0.740 0.869 sum 6.435 -21.124 2.552 22.229 Atomic orbital electron populations 1.69963 1.06094 1.27419 1.48875 1.24941 0.94924 0.99417 0.94726 0.86463 0.79394 0.82264 0.78702 1.20057 1.21072 1.20081 1.21190 0.93269 0.90431 1.53247 0.91963 1.18987 0.87747 0.81048 0.97600 1.45725 1.10930 1.04348 1.76908 1.16122 0.85067 0.81100 0.78404 1.90874 1.14230 1.84279 1.58894 1.44916 1.09331 1.04228 1.82573 1.21565 0.94849 0.81482 1.03302 1.22394 0.93351 0.90028 0.91550 0.87077 1.86725 1.40201 1.91910 1.15255 1.22860 0.85219 0.89251 1.06633 1.47403 1.16826 1.24283 1.19749 1.23732 1.02480 0.95369 0.99182 1.23633 0.94769 1.04133 0.98576 1.75183 1.22544 1.04853 1.11927 1.78494 0.92987 1.16232 1.16127 0.92390 0.95724 0.95733 0.78021 0.76827 0.90737 0.91121 0.77188 0.86168 0.87325 0.79334 0.79498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.27 7.11 5.43 -5.19 -0.03 7.08 16 10 N -0.73 -15.36 5.55 -66.41 -0.37 -15.73 16 11 C 0.69 13.74 8.57 -86.92 -0.74 13.00 16 12 O -0.60 -14.45 16.34 5.28 0.09 -14.36 16 13 N -0.75 -10.27 5.45 -65.22 -0.36 -10.62 16 14 C 0.11 1.13 5.34 -4.04 -0.02 1.11 16 15 C 0.09 0.65 3.25 -26.73 -0.09 0.56 16 16 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 17 O -0.54 -4.94 12.12 -35.23 -0.43 -5.37 16 18 C 0.08 0.43 6.14 -4.04 -0.02 0.40 16 19 N -0.29 -2.37 3.44 -61.26 -0.21 -2.58 16 20 C -0.06 -0.38 11.57 -17.05 -0.20 -0.57 16 21 C -0.05 -0.46 12.05 -17.74 -0.21 -0.67 16 22 N -0.28 -3.45 12.41 30.23 0.38 -3.08 16 23 N -0.06 -0.69 12.10 60.35 0.73 0.04 16 24 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.39 7.07 8.34 -40.82 -0.34 6.73 16 28 H 0.40 4.73 8.36 -40.82 -0.34 4.39 16 29 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.38 2.51 9.04 45.56 0.41 2.92 16 32 H 0.12 0.27 8.07 -51.93 -0.42 -0.15 16 33 H 0.11 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.19 0.46 8.06 -52.48 -0.42 0.04 16 35 H 0.19 0.94 8.06 -52.48 -0.42 0.51 16 LS Contribution 313.32 15.07 4.72 4.72 Total: -1.00 -37.39 313.32 -5.07 -42.46 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -3.60 Total: 6.53 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -1.73 Total: 7.49 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.91 Total: -57.31 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.34 Total: -19.73 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -37.39 -5.07 -42.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634809450.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.798 kcal (2) G-P(sol) polarization free energy of solvation -37.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds