Wall clock time and date at job start Mon Mar 30 2020 01:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99410 * 2 1 4 4 H 1.48504 * 109.47120 * 239.99972 * 3 2 1 5 5 H 1.48504 * 109.47524 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47077 * 119.99940 * 3 2 1 7 7 C 1.37869 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99828 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00027 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46923 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99854 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99953 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00097 * 180.27545 * 11 10 9 14 14 C 1.46500 * 120.00431 * 179.72742 * 13 11 10 15 15 C 1.52999 * 109.47528 * 180.02562 * 14 13 11 16 16 H 1.08993 * 109.47533 * 59.99613 * 15 14 13 17 17 O 1.42905 * 109.46482 * 299.99525 * 15 14 13 18 18 C 1.52998 * 109.47306 * 180.02562 * 15 14 13 19 19 N 1.46500 * 109.47207 * 184.99697 * 18 15 14 20 20 C 1.35314 * 125.86899 * 125.00001 * 19 18 15 21 21 C 1.35345 * 106.17234 * 179.97438 * 20 19 18 22 22 N 1.33774 * 106.49954 * 0.02562 * 21 20 19 23 23 N 1.28626 * 108.88337 * 359.73510 * 22 21 20 24 24 H 0.96994 * 120.00789 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47477 * 59.99650 * 9 7 2 26 26 H 1.08997 * 109.47150 * 299.99545 * 9 7 2 27 27 H 0.97000 * 120.00410 * 0.02562 * 10 9 7 28 28 H 0.97000 * 120.00112 * 359.73180 * 13 11 10 29 29 H 1.09009 * 109.46712 * 300.00517 * 14 13 11 30 30 H 1.08998 * 109.47207 * 59.99494 * 14 13 11 31 31 H 0.96695 * 114.00265 * 300.00290 * 17 15 14 32 32 H 1.09002 * 109.46913 * 304.99845 * 18 15 14 33 33 H 1.09009 * 109.47190 * 64.99312 * 18 15 14 34 34 H 1.08003 * 126.91048 * 0.02562 * 20 19 18 35 35 H 1.08003 * 126.74567 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7541 -4.8833 0.0011 12 8 0.5586 -5.1055 0.0011 13 7 2.6299 -5.9076 0.0067 14 6 2.1417 -7.2889 0.0133 15 6 3.3317 -8.2505 0.0194 16 1 3.9364 -8.0746 0.9090 17 8 4.1266 -8.0318 -1.1479 18 6 2.8218 -9.6930 0.0256 19 7 3.9562 -10.6114 0.1518 20 6 4.1007 -11.5676 1.0982 21 6 5.2824 -12.1758 0.8423 22 7 5.7966 -11.5695 -0.2336 23 7 4.9843 -10.6508 -0.6217 24 1 -0.4851 0.8399 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 3.1569 -3.4353 0.0009 28 1 3.5836 -5.7303 0.0064 29 1 1.5355 -7.4557 0.9038 30 1 1.5366 -7.4646 -0.8761 31 1 3.6519 -8.1706 -1.9787 32 1 2.1439 -9.8350 0.8673 33 1 2.2923 -9.8952 -0.9055 34 1 3.4113 -11.7994 1.8966 35 1 5.7239 -12.9899 1.3980 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634809450.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:17 Heat of formation + Delta-G solvation = -14.370732 kcal Electronic energy + Delta-G solvation = -19610.059310 eV Core-core repulsion = 16258.340303 eV Total energy + Delta-G solvation = -3351.719007 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.10357 -40.93910 -39.02805 -36.19300 -35.38182 -35.14113 -34.28901 -31.86263 -31.39197 -29.29520 -27.23163 -24.68298 -23.67672 -23.21300 -22.40898 -21.75421 -19.80099 -18.94733 -18.05186 -17.83588 -17.28351 -16.97276 -16.59812 -16.32673 -16.18876 -15.71168 -15.40581 -14.97980 -14.85108 -14.42630 -14.32793 -13.99768 -13.65853 -13.17630 -12.91545 -12.67685 -12.59680 -12.29326 -12.23014 -11.79521 -11.51685 -11.48292 -11.30752 -10.83175 -10.79004 -10.27914 -10.24741 -9.58217 -8.28124 -6.44299 0.74672 1.41330 1.44462 1.47724 1.55811 1.70723 1.92946 2.24827 2.39815 3.06746 3.22690 3.42007 3.58327 3.59570 3.80545 3.85699 4.11635 4.35602 4.36847 4.40492 4.64774 4.80661 4.92702 5.08751 5.28307 5.33029 5.48184 5.51017 5.66997 5.73404 5.85985 6.24201 6.67245 6.71276 7.24730 7.29776 7.62809 7.72035 8.83856 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.051069 B = 0.002750 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.140971 B =10180.526766 C =10511.192435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.286 3.714 10 N -0.726 5.726 11 C 0.692 3.308 12 O -0.647 6.647 13 N -0.730 5.730 14 C 0.112 3.888 15 C 0.103 3.897 16 H 0.107 0.893 17 O -0.557 6.557 18 C 0.081 3.919 19 N -0.287 5.287 20 C -0.040 4.040 21 C -0.072 4.072 22 N -0.325 5.325 23 N -0.102 5.102 24 H 0.269 0.731 25 H -0.014 1.014 26 H -0.012 1.012 27 H 0.403 0.597 28 H 0.409 0.591 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.390 0.610 32 H 0.158 0.842 33 H 0.124 0.876 34 H 0.235 0.765 35 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.532 -22.974 3.529 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.099 0.901 9 C 0.163 3.837 10 N -0.379 5.379 11 C 0.392 3.608 12 O -0.530 6.530 13 N -0.387 5.387 14 C -0.013 4.013 15 C 0.042 3.958 16 H 0.125 0.875 17 O -0.364 6.364 18 C -0.040 4.040 19 N -0.081 5.081 20 C -0.191 4.191 21 C -0.229 4.229 22 N -0.191 5.191 23 N -0.082 5.082 24 H 0.078 0.922 25 H 0.004 0.996 26 H 0.005 0.995 27 H 0.238 0.762 28 H 0.246 0.754 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.239 0.761 32 H 0.176 0.824 33 H 0.142 0.858 34 H 0.251 0.749 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 7.420 -22.289 2.711 23.648 hybrid contribution -0.267 0.525 0.494 0.768 sum 7.153 -21.764 3.205 23.133 Atomic orbital electron populations 1.70122 1.08165 1.28635 1.49889 1.26031 0.95790 1.03764 0.93894 0.85220 0.77920 0.76721 0.79420 1.18823 1.20998 1.18731 1.21575 0.94256 0.90637 1.52991 0.90054 1.18397 0.88047 0.83252 0.94041 1.45332 1.10878 1.04053 1.77627 1.16265 0.85071 0.81540 0.77949 1.90842 1.16473 1.84935 1.60736 1.44737 1.09101 1.04480 1.80400 1.21828 0.96156 0.79511 1.03849 1.22213 0.91839 0.90875 0.90852 0.87514 1.86700 1.41268 1.92144 1.16267 1.23067 0.84614 0.87026 1.09258 1.47625 1.16503 1.24574 1.19386 1.24450 1.02196 0.93569 0.98836 1.24232 0.95692 1.04938 0.98045 1.75110 1.24015 1.06025 1.13955 1.78428 0.94482 1.17358 1.17927 0.92207 0.99574 0.99454 0.76165 0.75442 0.89960 0.90828 0.76075 0.82433 0.85825 0.74852 0.77071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.29 21.44 0.28 -55.57 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.98 42.31 29.54 68.60 2.03 44.34 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.56 -30.36 9.28 25.60 0.24 -30.12 16 8 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16 9 C 0.29 15.74 5.43 85.63 0.46 16.20 16 10 N -0.73 -30.88 5.55 -482.29 -2.68 -33.55 16 11 C 0.69 27.43 8.57 179.06 1.53 28.97 16 12 O -0.65 -31.55 16.34 -4.01 -0.07 -31.61 16 13 N -0.73 -18.99 5.45 -478.53 -2.61 -21.60 16 14 C 0.11 1.98 5.34 86.38 0.46 2.44 16 15 C 0.10 1.29 3.25 30.59 0.10 1.39 16 16 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 17 O -0.56 -9.55 12.12 -148.98 -1.81 -11.35 16 18 C 0.08 0.58 6.14 86.38 0.53 1.11 16 19 N -0.29 -4.03 3.44 -347.72 -1.20 -5.23 16 20 C -0.04 -0.39 11.57 83.49 0.97 0.57 16 21 C -0.07 -1.08 12.05 83.73 1.01 -0.07 16 22 N -0.33 -7.97 12.41 -58.26 -0.72 -8.69 16 23 N -0.10 -2.37 12.10 37.02 0.45 -1.93 16 24 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 25 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 26 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 27 H 0.40 14.40 8.34 -92.71 -0.77 13.62 16 28 H 0.41 9.05 8.36 -92.71 -0.78 8.27 16 29 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.39 4.71 9.04 -74.06 -0.67 4.04 16 32 H 0.16 -0.04 8.07 -2.39 -0.02 -0.05 16 33 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.24 -0.09 8.06 -2.91 -0.02 -0.11 16 35 H 0.21 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -85.00 313.32 -1.63 -86.63 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -1.07 Total: 17.35 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 5.76 Total: 21.22 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -6.47 Total: -126.57 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -1.87 Total: -42.96 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -85.00 -1.63 -86.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634809450.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.255 kcal (2) G-P(sol) polarization free energy of solvation -85.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds