Wall clock time and date at job start Mon Mar 30 2020 01:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38613 * 120.72299 * 2 1 4 4 N 1.32266 * 119.20111 * 179.97438 * 3 2 1 5 5 C 1.32500 * 120.73827 * 0.02562 * 4 3 2 6 6 N 1.38535 * 119.21309 * 179.97438 * 5 4 3 7 7 C 1.39810 * 119.99524 * 185.52545 * 6 5 4 8 8 C 1.38898 * 120.07675 * 33.69423 * 7 6 5 9 9 C 1.38104 * 119.92704 * 179.97438 * 8 7 6 10 10 C 1.38288 * 120.07210 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.92275 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.46900 * 90.00418 * 11 10 9 13 13 H 1.07993 * 119.99991 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99698 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00134 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99465 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47473 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.46991 * 120.00443 * 16 14 12 19 19 H 1.48502 * 109.47023 * 239.99972 * 16 14 12 20 20 C 1.38282 * 120.14677 * 0.28001 * 10 9 8 21 21 C 1.38110 * 120.07330 * 359.44847 * 20 10 9 22 22 N 1.32498 * 121.56963 * 0.25394 * 5 4 3 23 23 C 1.32272 * 120.73397 * 359.48493 * 22 5 4 24 24 H 1.09007 * 109.46965 * 90.00326 * 1 2 3 25 25 H 1.09000 * 109.47079 * 209.99931 * 1 2 3 26 26 H 1.08995 * 109.47473 * 330.00568 * 1 2 3 27 27 H 1.08010 * 120.40143 * 0.02562 * 3 2 1 28 28 H 0.97001 * 119.99714 * 5.52235 * 6 5 4 29 29 H 1.08002 * 120.03501 * 359.95564 * 8 7 6 30 30 H 1.07997 * 119.96365 * 180.02562 * 9 8 7 31 31 H 1.08991 * 109.47382 * 330.00087 * 11 10 9 32 32 H 1.08998 * 109.46724 * 209.99669 * 11 10 9 33 33 H 0.97000 * 119.99616 * 179.97438 * 15 14 12 34 34 H 1.08006 * 119.96149 * 179.72600 * 20 10 9 35 35 H 1.08000 * 120.03443 * 180.28116 * 21 20 10 36 36 H 1.08000 * 120.39318 * 180.25565 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2151 1.1916 0.0000 4 7 3.5373 1.1565 0.0005 5 6 4.1841 0.0000 0.0005 6 7 5.5694 0.0001 0.0005 7 6 6.2684 -1.2051 -0.1161 8 6 5.7504 -2.2386 -0.8860 9 6 6.4437 -3.4276 -0.9994 10 6 7.6527 -3.5896 -0.3480 11 6 8.4068 -4.8883 -0.4746 12 6 9.3398 -4.8142 -1.6557 13 1 9.3822 -3.9168 -2.2550 14 6 10.1394 -5.8923 -1.9712 15 7 10.0874 -6.9854 -1.2418 16 14 11.2953 -5.8008 -3.4357 17 1 11.1649 -4.4727 -4.0871 18 1 12.6943 -5.9902 -2.9747 19 1 10.9464 -6.8666 -4.4091 20 6 8.1687 -2.5645 0.4236 21 6 7.4832 -1.3710 0.5367 22 7 3.5374 -1.1564 -0.0050 23 6 2.2151 -1.1915 -0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6935 2.1374 0.0004 28 1 6.0543 0.8363 0.0814 29 1 4.8063 -2.1126 -1.3950 30 1 6.0417 -4.2314 -1.5982 31 1 7.7007 -5.7057 -0.6199 32 1 8.9836 -5.0634 0.4336 33 1 10.6496 -7.7439 -1.4640 34 1 9.1111 -2.6959 0.9346 35 1 7.8890 -0.5692 1.1357 36 1 1.6937 -2.1373 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643202976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:29 Heat of formation + Delta-G solvation = 76.182577 kcal Electronic energy + Delta-G solvation = -18856.550866 eV Core-core repulsion = 15919.607808 eV Total energy + Delta-G solvation = -2936.943057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.18163 -38.89374 -36.04248 -33.81538 -33.40961 -32.62849 -30.35670 -30.23369 -27.34013 -26.05679 -24.78144 -23.25179 -22.39384 -21.85152 -20.28082 -18.28241 -17.93057 -16.33804 -16.17328 -15.43245 -15.26081 -14.80110 -14.46422 -14.17808 -14.10637 -13.60950 -13.39211 -13.00372 -12.76611 -12.62966 -12.60479 -12.10147 -11.46961 -11.25863 -11.05677 -10.94272 -10.77050 -10.59136 -10.51774 -10.14104 -9.56727 -9.40170 -9.11632 -8.61275 -8.40819 -8.24141 -7.14604 -6.01776 -4.05707 0.94456 1.06518 2.08321 2.17137 2.83774 3.30580 3.38214 3.43497 3.78197 4.10974 4.40726 4.49888 4.59359 4.66718 4.73612 4.80798 5.32187 5.32889 5.40613 5.47263 5.58300 5.62555 5.78255 5.94867 6.10246 6.17210 6.23114 6.40362 6.67696 6.74942 6.91908 7.14257 7.21458 7.26494 7.47836 7.55257 7.76899 7.89958 7.94271 8.27713 8.35245 9.00106 9.58035 11.07654 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037214 B = 0.003429 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.221301 B = 8163.937720 C = 8413.443721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.261 4.261 3 C 0.189 3.811 4 N -0.568 5.568 5 C 0.556 3.444 6 N -0.632 5.632 7 C 0.121 3.879 8 C -0.110 4.110 9 C -0.107 4.107 10 C -0.044 4.044 11 C 0.048 3.952 12 C -0.509 4.509 13 H 0.058 0.942 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.107 4.107 21 C -0.145 4.145 22 N -0.544 5.544 23 C 0.190 3.810 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.165 0.835 28 H 0.418 0.582 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.031 14.537 3.395 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.269 4.269 3 C 0.021 3.979 4 N -0.289 5.289 5 C 0.200 3.800 6 N -0.260 5.260 7 C 0.027 3.973 8 C -0.131 4.131 9 C -0.126 4.126 10 C -0.045 4.045 11 C 0.011 3.989 12 C -0.548 4.548 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.125 4.125 21 C -0.166 4.166 22 N -0.265 5.265 23 C 0.021 3.979 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.182 0.818 28 H 0.256 0.744 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.858 14.252 3.395 21.590 hybrid contribution -0.031 0.372 -0.750 0.837 sum -15.889 14.624 2.645 21.756 Atomic orbital electron populations 1.20468 0.89532 1.02827 1.02207 1.21331 0.98776 0.95462 1.11313 1.22783 0.88141 0.98093 0.88900 1.67852 1.10632 1.28433 1.22011 1.19324 0.86868 0.84851 0.88945 1.41479 1.00301 1.08936 1.75284 1.17400 0.93496 0.86313 1.00092 1.20931 1.00138 0.93413 0.98617 1.20953 0.95036 0.96748 0.99876 1.20684 0.93308 0.97923 0.92546 1.18345 0.94501 0.88312 0.97723 1.21120 1.21426 1.00162 1.12070 0.92416 1.25016 0.97203 0.95380 0.96805 1.69969 1.39998 1.04236 1.39161 0.86496 0.80624 0.78113 0.82583 1.19680 1.20978 1.20966 1.20854 0.99557 0.92275 0.99847 1.20707 0.95854 0.98626 1.01385 1.68266 1.09997 1.27932 1.20298 1.22989 0.88493 0.98204 0.88192 0.91427 0.91450 0.91601 0.81818 0.74381 0.85978 0.86191 0.95327 0.95357 0.92935 0.86038 0.86879 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 10.06 36.00 0.36 -0.15 16 2 C -0.26 -2.38 5.91 -104.35 -0.62 -3.00 16 3 C 0.19 1.88 11.00 -17.23 -0.19 1.69 16 4 N -0.57 -7.46 10.46 -13.89 -0.15 -7.61 16 5 C 0.56 8.21 8.17 -322.61 -2.63 5.58 16 6 N -0.63 -9.30 5.49 -11.62 -0.06 -9.36 16 7 C 0.12 2.06 6.28 -83.73 -0.53 1.53 16 8 C -0.11 -2.01 8.55 -39.39 -0.34 -2.35 16 9 C -0.11 -2.17 9.69 -39.61 -0.38 -2.55 16 10 C -0.04 -0.96 5.07 -104.59 -0.53 -1.49 16 11 C 0.05 1.24 5.10 -29.03 -0.15 1.09 16 12 C -0.51 -14.32 9.09 -34.44 -0.31 -14.64 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 16 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C -0.11 -2.09 9.69 -39.61 -0.38 -2.47 16 21 C -0.14 -2.46 9.96 -39.38 -0.39 -2.85 16 22 N -0.54 -7.98 7.10 -13.89 -0.10 -8.08 16 23 C 0.19 2.10 11.00 -17.22 -0.19 1.91 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 26 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 27 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 28 H 0.42 5.20 8.93 -40.82 -0.36 4.84 16 29 H 0.12 2.14 6.28 -52.49 -0.33 1.81 16 30 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 31 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 314.29 15.07 4.74 4.74 Total: -1.00 -32.10 314.29 -10.69 -42.79 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.45 Total: 2.87 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -6.38 Total: -16.18 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.43 Total: -50.82 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.10 -10.69 -42.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643202976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.968 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds