Wall clock time and date at job start Mon Mar 30 2020 01:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38613 * 120.72299 * 2 1 4 4 N 1.32266 * 119.20111 * 179.97438 * 3 2 1 5 5 C 1.32500 * 120.73827 * 0.02562 * 4 3 2 6 6 N 1.38535 * 119.21309 * 179.97438 * 5 4 3 7 7 C 1.39810 * 119.99524 * 185.52545 * 6 5 4 8 8 C 1.38898 * 120.07675 * 33.69423 * 7 6 5 9 9 C 1.38104 * 119.92704 * 179.97438 * 8 7 6 10 10 C 1.38288 * 120.07210 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.92275 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.46900 * 90.00418 * 11 10 9 13 13 H 1.07993 * 119.99991 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99698 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00134 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99465 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47473 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.46991 * 120.00443 * 16 14 12 19 19 H 1.48502 * 109.47023 * 239.99972 * 16 14 12 20 20 C 1.38282 * 120.14677 * 0.28001 * 10 9 8 21 21 C 1.38110 * 120.07330 * 359.44847 * 20 10 9 22 22 N 1.32498 * 121.56963 * 0.25394 * 5 4 3 23 23 C 1.32272 * 120.73397 * 359.48493 * 22 5 4 24 24 H 1.09007 * 109.46965 * 90.00326 * 1 2 3 25 25 H 1.09000 * 109.47079 * 209.99931 * 1 2 3 26 26 H 1.08995 * 109.47473 * 330.00568 * 1 2 3 27 27 H 1.08010 * 120.40143 * 0.02562 * 3 2 1 28 28 H 0.97001 * 119.99714 * 5.52235 * 6 5 4 29 29 H 1.08002 * 120.03501 * 359.95564 * 8 7 6 30 30 H 1.07997 * 119.96365 * 180.02562 * 9 8 7 31 31 H 1.08991 * 109.47382 * 330.00087 * 11 10 9 32 32 H 1.08998 * 109.46724 * 209.99669 * 11 10 9 33 33 H 0.97000 * 119.99616 * 179.97438 * 15 14 12 34 34 H 1.08006 * 119.96149 * 179.72600 * 20 10 9 35 35 H 1.08000 * 120.03443 * 180.28116 * 21 20 10 36 36 H 1.08000 * 120.39318 * 180.25565 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2151 1.1916 0.0000 4 7 3.5373 1.1565 0.0005 5 6 4.1841 0.0000 0.0005 6 7 5.5694 0.0001 0.0005 7 6 6.2684 -1.2051 -0.1161 8 6 5.7504 -2.2386 -0.8860 9 6 6.4437 -3.4276 -0.9994 10 6 7.6527 -3.5896 -0.3480 11 6 8.4068 -4.8883 -0.4746 12 6 9.3398 -4.8142 -1.6557 13 1 9.3822 -3.9168 -2.2550 14 6 10.1394 -5.8923 -1.9712 15 7 10.0874 -6.9854 -1.2418 16 14 11.2953 -5.8008 -3.4357 17 1 11.1649 -4.4727 -4.0871 18 1 12.6943 -5.9902 -2.9747 19 1 10.9464 -6.8666 -4.4091 20 6 8.1687 -2.5645 0.4236 21 6 7.4832 -1.3710 0.5367 22 7 3.5374 -1.1564 -0.0050 23 6 2.2151 -1.1915 -0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6935 2.1374 0.0004 28 1 6.0543 0.8363 0.0814 29 1 4.8063 -2.1126 -1.3950 30 1 6.0417 -4.2314 -1.5982 31 1 7.7007 -5.7057 -0.6199 32 1 8.9836 -5.0634 0.4336 33 1 10.6496 -7.7439 -1.4640 34 1 9.1111 -2.6959 0.9346 35 1 7.8890 -0.5692 1.1357 36 1 1.6937 -2.1373 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643202976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:29 Heat of formation + Delta-G solvation = 59.779410 kcal Electronic energy + Delta-G solvation = -18857.262161 eV Core-core repulsion = 15919.607808 eV Total energy + Delta-G solvation = -2937.654352 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.12372 -40.28663 -37.28934 -35.21585 -34.69354 -33.84142 -31.95324 -31.74185 -28.69437 -27.28560 -25.76684 -24.88934 -23.69264 -23.07137 -21.81456 -19.30164 -19.02334 -18.48988 -17.39269 -16.79172 -16.45818 -16.15162 -15.71678 -15.50287 -15.13944 -14.62935 -14.53671 -14.37338 -14.14112 -14.03979 -13.61655 -13.27981 -13.14138 -13.05162 -12.61838 -12.44911 -12.11834 -11.90727 -11.87535 -11.60847 -11.42553 -11.30489 -10.59486 -10.08031 -9.78997 -9.69950 -8.51810 -8.14696 -6.31439 -0.00887 0.21731 0.60858 0.75068 1.40130 1.40564 1.54294 1.77658 2.40870 2.82864 3.08441 3.12073 3.26180 3.66563 3.81526 4.06699 4.09831 4.16747 4.18488 4.41779 4.63536 4.68855 4.74063 4.87615 4.94545 5.13524 5.16626 5.20186 5.33810 5.37184 5.45126 5.53894 5.59003 5.74987 5.80544 6.04269 6.12030 6.19042 6.34176 6.43026 6.81621 7.30589 7.36949 8.91004 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037214 B = 0.003429 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.221301 B = 8163.937720 C = 8413.443721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.240 4.240 3 C 0.178 3.822 4 N -0.578 5.578 5 C 0.532 3.468 6 N -0.633 5.633 7 C 0.140 3.860 8 C -0.111 4.111 9 C -0.115 4.115 10 C -0.077 4.077 11 C 0.058 3.942 12 C -0.526 4.526 13 H 0.054 0.946 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.965 3.035 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.277 1.277 20 C -0.112 4.112 21 C -0.137 4.137 22 N -0.577 5.577 23 C 0.170 3.830 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.202 0.798 28 H 0.428 0.572 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.002 0.998 32 H 0.005 0.995 33 H 0.265 0.735 34 H 0.123 0.877 35 H 0.148 0.852 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.730 16.993 3.014 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.246 4.246 3 C 0.011 3.989 4 N -0.299 5.299 5 C 0.176 3.824 6 N -0.264 5.264 7 C 0.045 3.955 8 C -0.131 4.131 9 C -0.134 4.134 10 C -0.078 4.078 11 C 0.022 3.978 12 C -0.564 4.564 13 H 0.072 0.928 14 C -0.195 4.195 15 N -0.571 5.571 16 Si 0.790 3.210 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.130 4.130 21 C -0.158 4.158 22 N -0.298 5.298 23 C 0.003 3.997 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.218 0.782 28 H 0.268 0.732 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.020 0.980 32 H 0.023 0.977 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.166 0.834 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.623 16.739 3.020 24.493 hybrid contribution 0.234 -0.276 -0.574 0.678 sum -17.389 16.463 2.446 24.071 Atomic orbital electron populations 1.20576 0.86591 1.04320 1.03358 1.21741 1.00678 0.94369 1.07859 1.23519 0.87294 1.00049 0.87990 1.67879 1.12166 1.27751 1.22085 1.19431 0.86823 0.85575 0.90579 1.41331 1.00673 1.08283 1.76082 1.17447 0.93191 0.86744 0.98147 1.20944 1.00217 0.93043 0.98944 1.20896 0.94792 0.97640 1.00030 1.20366 0.94470 0.97147 0.95810 1.18073 0.93749 0.89954 0.96068 1.21427 1.22056 1.00149 1.12758 0.92776 1.25928 0.98879 0.94886 0.99775 1.70089 1.41027 1.05006 1.40956 0.85391 0.78391 0.78376 0.78852 1.19005 1.20101 1.20216 1.20899 0.99898 0.92730 0.99489 1.20928 0.95487 0.98359 1.01030 1.68187 1.11880 1.28457 1.21301 1.23509 0.87692 1.00156 0.88295 0.90240 0.90434 0.89728 0.78159 0.73220 0.85302 0.86836 0.98008 0.97693 0.92598 0.85879 0.83387 0.79498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.06 71.23 0.72 0.07 16 2 C -0.24 -3.63 5.91 -19.69 -0.12 -3.75 16 3 C 0.18 3.00 11.00 84.72 0.93 3.93 16 4 N -0.58 -13.96 10.46 -197.87 -2.07 -16.03 16 5 C 0.53 14.99 8.17 261.42 2.13 17.12 16 6 N -0.63 -17.75 5.49 -190.69 -1.05 -18.80 16 7 C 0.14 4.64 6.28 38.18 0.24 4.88 16 8 C -0.11 -4.05 8.55 22.40 0.19 -3.86 16 9 C -0.11 -4.81 9.69 22.25 0.22 -4.59 16 10 C -0.08 -3.53 5.07 -19.84 -0.10 -3.63 16 11 C 0.06 3.21 5.10 29.10 0.15 3.36 16 12 C -0.53 -30.62 9.09 25.60 0.23 -30.38 16 13 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 14 C 0.00 0.19 5.46 84.66 0.46 0.65 16 15 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 16 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 C -0.11 -4.43 9.69 22.25 0.22 -4.21 16 21 C -0.14 -4.51 9.96 22.40 0.22 -4.28 16 22 N -0.58 -16.30 7.10 -197.87 -1.41 -17.70 16 23 C 0.17 3.43 11.00 84.72 0.93 4.37 16 24 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 25 H 0.08 0.45 8.10 -2.39 -0.02 0.43 16 26 H 0.08 0.35 8.10 -2.39 -0.02 0.33 16 27 H 0.20 1.73 8.06 -2.91 -0.02 1.70 16 28 H 0.43 9.90 8.93 -92.71 -0.83 9.07 16 29 H 0.13 4.52 6.28 -2.91 -0.02 4.50 16 30 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 31 H 0.00 0.09 8.08 -2.39 -0.02 0.07 16 32 H 0.00 0.28 8.08 -2.39 -0.02 0.26 16 33 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -71.53 314.29 4.48 -67.05 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.27 Total: 15.34 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 6.43 Total: -20.33 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -4.24 Total: -109.03 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -71.53 4.48 -67.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643202976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.828 kcal (2) G-P(sol) polarization free energy of solvation -71.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds