Wall clock time and date at job start Mon Mar 30 2020 01:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38607 * 120.07673 * 2 1 4 4 C 1.38874 * 117.97125 * 180.02562 * 3 2 1 5 5 C 1.38610 * 117.96677 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.07780 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47307 * 94.97759 * 6 5 4 8 8 C 1.39685 * 120.00223 * 180.02562 * 7 6 5 9 9 C 1.39340 * 119.95216 * 359.72405 * 8 7 6 10 10 C 1.38481 * 120.42288 * 179.72324 * 9 8 7 11 11 C 1.37684 * 120.32287 * 0.55340 * 10 9 8 12 12 C 1.40746 * 119.89690 * 359.72853 * 11 10 9 13 13 C 1.41407 * 120.20833 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00115 * 24.40118 * 13 12 11 15 15 C 1.39930 * 120.00016 * 204.40789 * 13 12 11 16 16 N 1.30828 * 119.99738 * 17.87927 * 15 13 12 17 17 Si 1.86799 * 120.00034 * 197.88323 * 15 13 12 18 18 H 1.48505 * 109.46957 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47275 * 119.99586 * 17 15 13 20 20 H 1.48497 * 109.47114 * 239.99815 * 17 15 13 21 21 C 1.38283 * 119.95479 * 180.02562 * 8 7 6 22 22 N 1.31928 * 119.84778 * 359.97438 * 5 4 3 23 23 N 1.28350 * 122.18432 * 359.97438 * 22 5 4 24 24 H 1.09002 * 109.47338 * 269.97816 * 1 2 3 25 25 H 1.09002 * 109.47160 * 29.97818 * 1 2 3 26 26 H 1.08998 * 109.47214 * 149.97425 * 1 2 3 27 27 H 1.08003 * 121.01360 * 0.04155 * 3 2 1 28 28 H 1.07999 * 121.01974 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.47244 * 214.97670 * 6 5 4 30 30 H 1.09003 * 109.47034 * 334.97629 * 6 5 4 31 31 H 0.97002 * 120.00014 * 359.97438 * 7 6 5 32 32 H 1.07998 * 119.78269 * 0.02562 * 9 8 7 33 33 H 1.08005 * 119.83247 * 180.27759 * 10 9 8 34 34 H 1.08005 * 120.04705 * 179.74398 * 11 10 9 35 35 H 0.97008 * 119.99485 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.15715 * 359.97302 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1994 0.0000 4 6 3.5895 1.1484 -0.0005 5 6 4.1941 -0.0989 -0.0016 6 6 5.6970 -0.2097 -0.0017 7 7 6.1752 -0.3663 1.3742 8 6 7.5432 -0.4890 1.6284 9 6 8.4517 -0.4681 0.5722 10 6 9.8105 -0.5833 0.8136 11 6 10.2778 -0.7312 2.1002 12 6 9.3716 -0.7600 3.1768 13 6 9.8445 -0.9110 4.5009 14 1 10.8533 -0.6177 4.7508 15 6 9.0052 -1.4407 5.4873 16 7 7.9353 -2.1112 5.1448 17 14 9.4124 -1.1904 7.2931 18 1 10.6665 -0.4042 7.4133 19 1 8.3028 -0.4572 7.9538 20 1 9.5919 -2.5111 7.9478 21 6 7.9934 -0.6373 2.9275 22 7 3.4508 -1.1888 -0.0016 23 7 2.1682 -1.1417 -0.0001 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6795 2.1449 0.0007 28 1 4.1796 2.0529 -0.0002 29 1 5.9975 -1.0756 -0.5915 30 1 6.1278 0.6927 -0.4356 31 1 5.5418 -0.3840 2.1087 32 1 8.0942 -0.3565 -0.4408 33 1 10.5066 -0.5615 -0.0119 34 1 11.3381 -0.8248 2.2830 35 1 7.3532 -2.4781 5.8287 36 1 7.2898 -0.6581 3.7465 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651090918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:27 Heat of formation + Delta-G solvation = 72.827642 kcal Electronic energy + Delta-G solvation = -18896.343307 eV Core-core repulsion = 15959.254769 eV Total energy + Delta-G solvation = -2937.088538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18785 -37.84146 -35.56306 -33.96573 -33.51130 -32.72755 -29.53891 -29.41789 -27.62457 -25.55427 -25.15386 -23.89275 -22.47233 -20.93145 -19.89416 -17.63442 -17.22779 -16.68489 -15.83165 -15.44993 -15.14569 -14.73692 -14.55797 -14.16716 -13.59132 -13.40655 -13.19822 -13.01774 -12.61803 -12.59600 -12.54947 -12.13512 -11.56139 -11.14635 -10.99842 -10.93082 -10.57736 -10.41555 -10.36255 -9.84968 -9.72641 -9.55927 -9.40962 -9.24279 -8.77937 -7.29629 -6.70812 -6.19137 -4.29137 0.67727 0.71510 2.87269 3.11760 3.17306 3.23902 3.33549 3.34837 3.79656 3.99690 4.22933 4.35114 4.46536 4.51669 4.74268 4.80238 4.93664 5.17127 5.23518 5.46200 5.59634 5.67117 5.82542 5.85471 6.09652 6.11645 6.27814 6.58422 6.88024 7.09277 7.15809 7.38151 7.43279 7.79104 7.96780 8.10636 8.18868 8.49596 8.64379 8.65237 8.84238 9.03093 9.12365 10.27933 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.004125 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.385021 B = 6785.940281 C = 7761.274483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.062 3.938 3 C -0.123 4.123 4 C -0.099 4.099 5 C 0.057 3.943 6 C 0.192 3.808 7 N -0.754 5.754 8 C 0.216 3.784 9 C -0.299 4.299 10 C -0.065 4.065 11 C -0.256 4.256 12 C 0.139 3.861 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.077 3.923 16 N -0.791 5.791 17 Si 0.903 3.097 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.275 1.275 21 C -0.229 4.229 22 N -0.220 5.220 23 N -0.245 5.245 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.149 0.851 28 H 0.153 0.847 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.390 0.610 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.277 0.723 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.668 7.460 -7.641 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.083 4.083 3 C -0.152 4.152 4 C -0.129 4.129 5 C -0.089 4.089 6 C 0.066 3.934 7 N -0.389 5.389 8 C 0.118 3.882 9 C -0.322 4.322 10 C -0.084 4.084 11 C -0.277 4.277 12 C 0.136 3.864 13 C -0.494 4.494 14 H 0.095 0.905 15 C -0.140 4.140 16 N -0.416 5.416 17 Si 0.728 3.272 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.201 1.201 21 C -0.253 4.253 22 N -0.062 5.062 23 N -0.087 5.087 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.167 0.833 28 H 0.170 0.830 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.223 0.777 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.901 5.661 -7.752 16.080 hybrid contribution -0.097 1.603 1.104 1.949 sum -12.998 7.263 -6.648 16.306 Atomic orbital electron populations 1.20669 0.87565 1.03912 1.03629 1.22953 0.99125 0.90754 0.95434 1.22287 0.94636 0.99835 0.98401 1.22399 0.95246 0.99513 0.95722 1.23073 0.99026 0.90517 0.96241 1.19799 0.84200 1.02049 0.87388 1.44238 1.05021 1.85049 1.04558 1.17605 0.81337 0.95032 0.94205 1.19869 0.93005 1.23873 0.95452 1.20281 0.93997 0.98519 0.95626 1.20871 0.97844 1.16445 0.92499 1.17316 0.90794 0.85992 0.92328 1.19583 0.99512 1.37232 0.93081 0.90510 1.25887 0.94188 0.92603 1.01339 1.69882 1.12059 1.24070 1.35603 0.86349 0.79678 0.78892 0.82284 1.18433 1.19889 1.20095 1.20711 0.96681 1.14937 0.92932 1.73049 0.99043 1.26924 1.07198 1.73049 1.01634 1.24734 1.09309 0.89855 0.90375 0.89951 0.83297 0.82958 0.90921 0.91237 0.77659 0.89583 0.89544 0.89339 0.91207 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.20 36.01 0.37 -0.34 16 2 C 0.06 0.69 6.86 -82.41 -0.57 0.13 16 3 C -0.12 -1.16 9.87 -39.21 -0.39 -1.55 16 4 C -0.10 -1.10 9.85 -39.21 -0.39 -1.49 16 5 C 0.06 0.82 6.23 -82.41 -0.51 0.30 16 6 C 0.19 3.04 5.24 -5.20 -0.03 3.01 16 7 N -0.75 -14.67 5.72 -59.86 -0.34 -15.02 16 8 C 0.22 5.06 6.64 -83.85 -0.56 4.50 16 9 C -0.30 -6.76 9.32 -39.08 -0.36 -7.12 16 10 C -0.07 -1.51 10.02 -39.69 -0.40 -1.91 16 11 C -0.26 -6.49 9.79 -38.84 -0.38 -6.87 16 12 C 0.14 3.80 5.57 -106.86 -0.60 3.20 16 13 C -0.46 -12.62 9.05 -37.74 -0.34 -12.96 16 14 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 15 C 0.08 1.99 5.14 -17.35 -0.09 1.90 16 16 N -0.79 -21.03 10.95 55.55 0.61 -20.42 16 17 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 18 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 21 C -0.23 -6.03 8.53 -38.68 -0.33 -6.36 16 22 N -0.22 -3.66 11.43 33.59 0.38 -3.28 16 23 N -0.24 -3.70 11.43 33.59 0.38 -3.32 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 28 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 30 H 0.07 0.98 7.86 -51.93 -0.41 0.57 16 31 H 0.39 7.57 8.47 -40.82 -0.35 7.23 16 32 H 0.09 1.72 6.70 -52.49 -0.35 1.37 16 33 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 35 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 36 H 0.12 3.18 6.15 -52.49 -0.32 2.86 16 LS Contribution 312.71 15.07 4.71 4.71 Total: -1.00 -30.91 312.71 -8.20 -39.11 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -4.35 Total: 9.72 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -4.57 Total: -25.55 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 1.03 Total: -42.03 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.91 -8.20 -39.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651090918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.941 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds