Wall clock time and date at job start Mon Mar 30 2020 01:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38607 * 120.07673 * 2 1 4 4 C 1.38874 * 117.97125 * 180.02562 * 3 2 1 5 5 C 1.38610 * 117.96677 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.07780 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47307 * 94.97759 * 6 5 4 8 8 C 1.39685 * 120.00223 * 180.02562 * 7 6 5 9 9 C 1.39340 * 119.95216 * 359.72405 * 8 7 6 10 10 C 1.38481 * 120.42288 * 179.72324 * 9 8 7 11 11 C 1.37684 * 120.32287 * 0.55340 * 10 9 8 12 12 C 1.40746 * 119.89690 * 359.72853 * 11 10 9 13 13 C 1.41407 * 120.20833 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00115 * 24.40118 * 13 12 11 15 15 C 1.39930 * 120.00016 * 204.40789 * 13 12 11 16 16 N 1.30828 * 119.99738 * 17.87927 * 15 13 12 17 17 Si 1.86799 * 120.00034 * 197.88323 * 15 13 12 18 18 H 1.48505 * 109.46957 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47275 * 119.99586 * 17 15 13 20 20 H 1.48497 * 109.47114 * 239.99815 * 17 15 13 21 21 C 1.38283 * 119.95479 * 180.02562 * 8 7 6 22 22 N 1.31928 * 119.84778 * 359.97438 * 5 4 3 23 23 N 1.28350 * 122.18432 * 359.97438 * 22 5 4 24 24 H 1.09002 * 109.47338 * 269.97816 * 1 2 3 25 25 H 1.09002 * 109.47160 * 29.97818 * 1 2 3 26 26 H 1.08998 * 109.47214 * 149.97425 * 1 2 3 27 27 H 1.08003 * 121.01360 * 0.04155 * 3 2 1 28 28 H 1.07999 * 121.01974 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.47244 * 214.97670 * 6 5 4 30 30 H 1.09003 * 109.47034 * 334.97629 * 6 5 4 31 31 H 0.97002 * 120.00014 * 359.97438 * 7 6 5 32 32 H 1.07998 * 119.78269 * 0.02562 * 9 8 7 33 33 H 1.08005 * 119.83247 * 180.27759 * 10 9 8 34 34 H 1.08005 * 120.04705 * 179.74398 * 11 10 9 35 35 H 0.97008 * 119.99485 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.15715 * 359.97302 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1994 0.0000 4 6 3.5895 1.1484 -0.0005 5 6 4.1941 -0.0989 -0.0016 6 6 5.6970 -0.2097 -0.0017 7 7 6.1752 -0.3663 1.3742 8 6 7.5432 -0.4890 1.6284 9 6 8.4517 -0.4681 0.5722 10 6 9.8105 -0.5833 0.8136 11 6 10.2778 -0.7312 2.1002 12 6 9.3716 -0.7600 3.1768 13 6 9.8445 -0.9110 4.5009 14 1 10.8533 -0.6177 4.7508 15 6 9.0052 -1.4407 5.4873 16 7 7.9353 -2.1112 5.1448 17 14 9.4124 -1.1904 7.2931 18 1 10.6665 -0.4042 7.4133 19 1 8.3028 -0.4572 7.9538 20 1 9.5919 -2.5111 7.9478 21 6 7.9934 -0.6373 2.9275 22 7 3.4508 -1.1888 -0.0016 23 7 2.1682 -1.1417 -0.0001 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6795 2.1449 0.0007 28 1 4.1796 2.0529 -0.0002 29 1 5.9975 -1.0756 -0.5915 30 1 6.1278 0.6927 -0.4356 31 1 5.5418 -0.3840 2.1087 32 1 8.0942 -0.3565 -0.4408 33 1 10.5066 -0.5615 -0.0119 34 1 11.3381 -0.8248 2.2830 35 1 7.3532 -2.4781 5.8287 36 1 7.2898 -0.6581 3.7465 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651090918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:27 Heat of formation + Delta-G solvation = 53.458790 kcal Electronic energy + Delta-G solvation = -18897.183204 eV Core-core repulsion = 15959.254769 eV Total energy + Delta-G solvation = -2937.928435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.14230 -39.63234 -37.03371 -35.41156 -34.72872 -34.02462 -31.34664 -30.77204 -28.85512 -27.16217 -26.75592 -24.84360 -23.56610 -22.72899 -21.70883 -19.11006 -18.60222 -18.05556 -17.08357 -16.62162 -16.54087 -16.34130 -15.92370 -15.60736 -14.93695 -14.64893 -14.48397 -14.13897 -14.09519 -13.76236 -13.70641 -13.37244 -13.19478 -12.89767 -12.73290 -12.48755 -12.10603 -11.92929 -11.56646 -11.34361 -11.21723 -11.11415 -10.69810 -10.66933 -10.50155 -9.25082 -8.62598 -7.96205 -6.32253 -0.20541 -0.18263 1.07630 1.32849 1.37909 1.53032 1.57020 2.22629 2.32617 2.80073 2.82249 3.01069 3.40908 3.56817 3.71379 3.86627 3.99539 4.08076 4.46399 4.52129 4.60022 4.60878 4.72938 4.79171 4.82368 4.99423 5.02702 5.18990 5.19625 5.28738 5.34364 5.42828 5.56476 5.92957 6.10277 6.21060 6.24014 6.56636 6.90150 6.95476 7.05693 7.20115 7.68204 8.37841 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.004125 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.385021 B = 6785.940281 C = 7761.274483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.059 3.941 3 C -0.107 4.107 4 C -0.099 4.099 5 C 0.040 3.960 6 C 0.194 3.806 7 N -0.749 5.749 8 C 0.220 3.780 9 C -0.298 4.298 10 C -0.061 4.061 11 C -0.283 4.283 12 C 0.108 3.892 13 C -0.502 4.502 14 H 0.073 0.927 15 C 0.036 3.964 16 N -0.825 5.825 17 Si 0.980 3.020 18 H -0.257 1.257 19 H -0.265 1.265 20 H -0.267 1.267 21 C -0.258 4.258 22 N -0.268 5.268 23 N -0.287 5.287 24 H 0.093 0.907 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.197 0.803 28 H 0.181 0.819 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.388 0.612 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.284 0.716 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.130 9.498 -8.388 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.087 4.087 3 C -0.136 4.136 4 C -0.127 4.127 5 C -0.106 4.106 6 C 0.069 3.931 7 N -0.381 5.381 8 C 0.120 3.880 9 C -0.321 4.321 10 C -0.080 4.080 11 C -0.304 4.304 12 C 0.105 3.895 13 C -0.532 4.532 14 H 0.091 0.909 15 C -0.179 4.179 16 N -0.451 5.451 17 Si 0.801 3.199 18 H -0.180 1.180 19 H -0.190 1.190 20 H -0.192 1.192 21 C -0.282 4.282 22 N -0.109 5.109 23 N -0.129 5.129 24 H 0.112 0.888 25 H 0.130 0.870 26 H 0.095 0.905 27 H 0.214 0.786 28 H 0.198 0.802 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.220 0.780 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.390 7.688 -8.535 18.413 hybrid contribution 0.212 1.010 1.176 1.565 sum -14.178 8.699 -7.359 18.189 Atomic orbital electron populations 1.20831 0.84721 1.05376 1.04662 1.23669 1.01017 0.90487 0.93478 1.22816 0.94001 1.01039 0.95726 1.22719 0.96403 0.98969 0.94654 1.22913 0.97967 0.91763 0.97940 1.19907 0.85786 1.02555 0.84892 1.44320 1.03525 1.83930 1.06367 1.17716 0.83305 0.93495 0.93483 1.20245 0.92756 1.22496 0.96615 1.20672 0.94998 0.96618 0.95694 1.21048 0.97905 1.18088 0.93314 1.17708 0.91782 0.86734 0.93266 1.19837 1.00042 1.39100 0.94244 0.90855 1.26746 0.93724 0.91558 1.05842 1.69954 1.13109 1.24745 1.37327 0.85202 0.79587 0.79061 0.76071 1.18032 1.18990 1.19204 1.20632 0.96250 1.17499 0.93830 1.72904 1.00184 1.28695 1.09067 1.72944 1.01232 1.27198 1.11478 0.88821 0.86962 0.90475 0.78569 0.80152 0.92164 0.88683 0.77961 0.86428 0.86031 0.89044 0.90605 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.20 71.24 0.73 -0.38 16 2 C 0.06 1.19 6.86 42.63 0.29 1.48 16 3 C -0.11 -1.63 9.87 22.51 0.22 -1.41 16 4 C -0.10 -1.90 9.85 22.51 0.22 -1.68 16 5 C 0.04 1.13 6.23 42.63 0.27 1.40 16 6 C 0.19 5.94 5.24 85.63 0.45 6.38 16 7 N -0.75 -29.14 5.72 -343.30 -1.96 -31.11 16 8 C 0.22 10.38 6.64 38.17 0.25 10.63 16 9 C -0.30 -13.08 9.32 22.59 0.21 -12.87 16 10 C -0.06 -2.76 10.02 22.20 0.22 -2.54 16 11 C -0.28 -14.60 9.79 22.75 0.22 -14.37 16 12 C 0.11 6.14 5.57 -21.31 -0.12 6.02 16 13 C -0.50 -28.44 9.05 23.46 0.21 -28.22 16 14 H 0.07 4.02 7.91 -2.91 -0.02 3.99 16 15 C 0.04 1.88 5.14 85.25 0.44 2.32 16 16 N -0.83 -45.50 10.95 21.82 0.24 -45.26 16 17 Si 0.98 39.88 29.59 68.60 2.03 41.91 16 18 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 19 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 20 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 21 C -0.26 -14.11 8.53 22.86 0.20 -13.91 16 22 N -0.27 -9.00 11.43 -47.63 -0.54 -9.54 16 23 N -0.29 -8.63 11.43 -47.63 -0.54 -9.17 16 24 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.11 0.52 8.09 -2.39 -0.02 0.50 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 28 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.06 1.99 7.93 -2.39 -0.02 1.97 16 30 H 0.10 2.42 7.86 -2.39 -0.02 2.40 16 31 H 0.39 15.38 8.47 -92.71 -0.79 14.59 16 32 H 0.12 4.36 6.70 -2.91 -0.02 4.34 16 33 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 34 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 35 H 0.28 14.20 8.30 -92.70 -0.77 13.43 16 36 H 0.10 5.54 6.15 -2.91 -0.02 5.52 16 Total: -1.00 -71.51 312.71 3.35 -68.16 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 0.32 Total: 32.17 kcal Atomic # 6 Polarization: -50.97 SS G_CDS: 3.81 Total: -47.15 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -2.81 Total: -95.08 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -71.51 3.35 -68.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651090918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.621 kcal (2) G-P(sol) polarization free energy of solvation -71.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds