Wall clock time and date at job start Mon Mar 30 2020 01:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38139 * 120.83461 * 2 1 4 4 N 1.32541 * 119.19723 * 180.28064 * 3 2 1 5 5 C 1.31795 * 121.01319 * 359.72041 * 4 3 2 6 6 N 1.31736 * 121.83353 * 0.02562 * 5 4 3 7 7 C 1.33007 * 120.68682 * 0.02562 * 6 5 4 8 8 N 1.38648 * 120.52855 * 180.02562 * 7 6 5 9 9 C 1.39783 * 120.00317 * 5.76856 * 8 7 6 10 10 C 1.38906 * 120.07335 * 32.98164 * 9 8 7 11 11 C 1.38095 * 119.92866 * 179.97438 * 10 9 8 12 12 C 1.38297 * 120.07494 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.92763 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47176 * 90.00028 * 13 12 11 15 15 H 1.08004 * 119.99627 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99912 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99755 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99826 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46817 * 89.99585 * 18 16 14 20 20 H 1.48499 * 109.46808 * 209.99554 * 18 16 14 21 21 H 1.48497 * 109.47188 * 329.99836 * 18 16 14 22 22 C 1.38290 * 120.14455 * 0.25951 * 12 11 10 23 23 C 1.38107 * 120.07254 * 359.48628 * 22 12 11 24 24 H 1.09002 * 109.47187 * 270.26677 * 1 2 3 25 25 H 1.09004 * 109.47379 * 30.26681 * 1 2 3 26 26 H 1.08995 * 109.47161 * 150.27216 * 1 2 3 27 27 H 1.08007 * 120.39847 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.08293 * 180.02562 * 5 4 3 29 29 H 0.97005 * 119.99610 * 185.77562 * 8 7 6 30 30 H 1.08007 * 120.03390 * 359.97438 * 10 9 8 31 31 H 1.08002 * 119.96737 * 180.02562 * 11 10 9 32 32 H 1.09004 * 109.47119 * 329.99966 * 13 12 11 33 33 H 1.09004 * 109.47210 * 210.00148 * 13 12 11 34 34 H 0.96998 * 119.99476 * 180.02562 * 17 16 14 35 35 H 1.08000 * 119.96174 * 179.72338 * 22 12 11 36 36 H 1.08001 * 120.03420 * 180.25667 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2150 1.1861 0.0000 4 7 3.5399 1.1483 -0.0057 5 6 4.1864 -0.0002 -0.0058 6 7 3.5520 -1.1547 -0.0008 7 6 2.2226 -1.1988 0.0041 8 7 1.5583 -2.4157 0.0099 9 6 2.2809 -3.6060 0.1323 10 6 3.4442 -3.6391 0.8906 11 6 4.1555 -4.8168 1.0100 12 6 3.7105 -5.9625 0.3760 13 6 4.4895 -7.2457 0.5081 14 6 3.9903 -8.0157 1.7034 15 1 3.1893 -7.6157 2.3074 16 6 4.5569 -9.2305 2.0267 17 7 5.5327 -9.7173 1.2915 18 14 3.9376 -10.1853 3.5079 19 1 2.8377 -11.0907 3.0886 20 1 5.0488 -10.9878 4.0794 21 1 3.4340 -9.2365 4.5332 22 6 2.5553 -5.9318 -0.3836 23 6 1.8364 -4.7586 -0.5028 24 1 -0.3634 0.0048 1.0277 25 1 -0.3634 0.8876 -0.5180 26 1 -0.3633 -0.8924 -0.5096 27 1 1.6952 2.1329 0.0004 28 1 5.2664 0.0053 -0.0100 29 1 0.5919 -2.4411 -0.0712 30 1 3.7921 -2.7448 1.3863 31 1 5.0599 -4.8434 1.5998 32 1 5.5472 -7.0168 0.6392 33 1 4.3566 -7.8458 -0.3921 34 1 5.9311 -10.5720 1.5187 35 1 2.2129 -6.8272 -0.8811 36 1 0.9321 -4.7363 -1.0929 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651434630.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:31 Heat of formation + Delta-G solvation = 71.424050 kcal Electronic energy + Delta-G solvation = -19027.489213 eV Core-core repulsion = 16090.339811 eV Total energy + Delta-G solvation = -2937.149403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.20647 -38.94236 -36.30841 -33.97426 -33.32197 -32.24346 -30.29471 -30.11937 -27.73228 -26.61573 -24.11327 -23.08727 -22.65388 -21.89576 -20.32330 -18.42918 -17.94313 -16.34152 -16.19464 -15.39733 -15.28336 -14.82154 -14.58975 -14.22509 -14.18245 -13.62964 -13.26925 -13.01752 -12.89217 -12.75596 -12.58943 -12.28849 -11.67396 -11.26517 -11.11398 -10.84059 -10.75618 -10.57184 -10.32258 -9.96321 -9.59001 -9.45225 -9.13514 -8.74468 -8.42057 -8.27896 -7.20290 -6.03270 -4.07458 0.88997 1.13525 2.05022 2.18289 2.93771 3.30251 3.36610 3.40767 3.79193 4.18429 4.23107 4.38186 4.49143 4.57404 4.70385 4.89457 5.24750 5.30502 5.35341 5.41752 5.54869 5.58733 5.66012 5.93399 6.08899 6.16925 6.19780 6.36023 6.63804 6.66522 6.90166 7.16214 7.17439 7.23218 7.48619 7.54585 7.76867 7.87413 7.92400 8.21319 8.33111 8.97926 9.56268 11.06160 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035573 B = 0.003607 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.920057 B = 7760.143339 C = 8012.646978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.258 4.258 3 C 0.172 3.828 4 N -0.563 5.563 5 C 0.328 3.672 6 N -0.555 5.555 7 C 0.433 3.567 8 N -0.644 5.644 9 C 0.112 3.888 10 C -0.110 4.110 11 C -0.107 4.107 12 C -0.043 4.043 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.107 4.107 23 C -0.147 4.147 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.162 0.838 28 H 0.195 0.805 29 H 0.415 0.585 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.121 0.879 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 19.054 -3.434 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.268 4.268 3 C 0.009 3.991 4 N -0.281 5.281 5 C 0.039 3.961 6 N -0.277 5.277 7 C 0.190 3.810 8 N -0.269 5.269 9 C 0.019 3.981 10 C -0.130 4.130 11 C -0.126 4.126 12 C -0.044 4.044 13 C 0.011 3.989 14 C -0.549 4.549 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.126 4.126 23 C -0.168 4.168 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.180 0.820 28 H 0.211 0.789 29 H 0.253 0.747 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.139 0.861 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.258 18.806 -3.442 20.825 hybrid contribution -1.571 -0.671 0.732 1.859 sum -9.829 18.135 -2.710 20.804 Atomic orbital electron populations 1.20486 0.89700 1.02807 1.02469 1.20927 0.98373 0.93578 1.13885 1.22774 0.89705 0.97107 0.89507 1.68407 1.09569 1.30777 1.19303 1.24776 1.00909 0.81790 0.88608 1.68282 1.07432 1.30997 1.21026 1.18423 0.88875 0.85710 0.87976 1.41998 1.08694 1.01486 1.74715 1.17487 0.95562 0.84707 1.00367 1.20940 0.95150 0.98299 0.98642 1.20974 1.00104 0.91666 0.99842 1.20699 0.94545 0.96667 0.92464 1.18345 0.94770 0.88068 0.97695 1.21071 1.18934 1.03674 1.11247 0.92496 1.25016 0.94991 0.97500 0.96853 1.69961 1.24865 1.19494 1.38994 0.86544 0.78402 0.79944 0.82866 1.20619 1.21165 1.19829 1.20858 0.95253 0.96629 0.99850 1.20704 1.01485 0.92894 1.01672 0.91036 0.90885 0.92015 0.82049 0.78855 0.74668 0.85841 0.86147 0.95293 0.95369 0.92854 0.86080 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.64 9.69 36.00 0.35 -0.29 16 2 C -0.26 -2.62 5.93 -104.15 -0.62 -3.24 16 3 C 0.17 1.71 10.99 -17.28 -0.19 1.52 16 4 N -0.56 -6.71 10.43 -14.66 -0.15 -6.87 16 5 C 0.33 4.04 12.28 -92.20 -1.13 2.90 16 6 N -0.56 -7.94 7.26 -13.79 -0.10 -8.04 16 7 C 0.43 5.66 7.21 -154.66 -1.12 4.54 16 8 N -0.64 -8.26 5.40 -9.83 -0.05 -8.32 16 9 C 0.11 1.81 6.31 -83.74 -0.53 1.28 16 10 C -0.11 -1.95 8.60 -39.39 -0.34 -2.29 16 11 C -0.11 -2.14 9.69 -39.61 -0.38 -2.52 16 12 C -0.04 -0.93 5.07 -104.58 -0.53 -1.47 16 13 C 0.05 1.23 5.10 -29.04 -0.15 1.09 16 14 C -0.51 -14.28 9.09 -34.44 -0.31 -14.59 16 15 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 18 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.11 -2.06 9.69 -39.61 -0.38 -2.44 16 23 C -0.15 -2.40 9.96 -39.38 -0.39 -2.79 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 26 H 0.06 0.37 6.60 -51.93 -0.34 0.03 16 27 H 0.16 1.07 8.06 -52.48 -0.42 0.64 16 28 H 0.19 1.84 8.06 -52.49 -0.42 1.41 16 29 H 0.41 4.08 6.91 -40.82 -0.28 3.80 16 30 H 0.12 2.12 6.27 -52.48 -0.33 1.79 16 31 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 32 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 310.86 15.07 4.68 4.68 Total: -1.00 -31.92 310.86 -10.02 -41.94 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.29 Total: 2.56 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -5.82 Total: -16.77 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.43 Total: -48.89 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.92 -10.02 -41.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651434630.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.365 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds