Wall clock time and date at job start Mon Mar 30 2020 01:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38139 * 120.83461 * 2 1 4 4 N 1.32541 * 119.19723 * 180.28064 * 3 2 1 5 5 C 1.31795 * 121.01319 * 359.72041 * 4 3 2 6 6 N 1.31736 * 121.83353 * 0.02562 * 5 4 3 7 7 C 1.33007 * 120.68682 * 0.02562 * 6 5 4 8 8 N 1.38648 * 120.52855 * 180.02562 * 7 6 5 9 9 C 1.39783 * 120.00317 * 5.76856 * 8 7 6 10 10 C 1.38906 * 120.07335 * 32.98164 * 9 8 7 11 11 C 1.38095 * 119.92866 * 179.97438 * 10 9 8 12 12 C 1.38297 * 120.07494 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.92763 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47176 * 90.00028 * 13 12 11 15 15 H 1.08004 * 119.99627 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99912 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99755 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99826 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46817 * 89.99585 * 18 16 14 20 20 H 1.48499 * 109.46808 * 209.99554 * 18 16 14 21 21 H 1.48497 * 109.47188 * 329.99836 * 18 16 14 22 22 C 1.38290 * 120.14455 * 0.25951 * 12 11 10 23 23 C 1.38107 * 120.07254 * 359.48628 * 22 12 11 24 24 H 1.09002 * 109.47187 * 270.26677 * 1 2 3 25 25 H 1.09004 * 109.47379 * 30.26681 * 1 2 3 26 26 H 1.08995 * 109.47161 * 150.27216 * 1 2 3 27 27 H 1.08007 * 120.39847 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.08293 * 180.02562 * 5 4 3 29 29 H 0.97005 * 119.99610 * 185.77562 * 8 7 6 30 30 H 1.08007 * 120.03390 * 359.97438 * 10 9 8 31 31 H 1.08002 * 119.96737 * 180.02562 * 11 10 9 32 32 H 1.09004 * 109.47119 * 329.99966 * 13 12 11 33 33 H 1.09004 * 109.47210 * 210.00148 * 13 12 11 34 34 H 0.96998 * 119.99476 * 180.02562 * 17 16 14 35 35 H 1.08000 * 119.96174 * 179.72338 * 22 12 11 36 36 H 1.08001 * 120.03420 * 180.25667 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2150 1.1861 0.0000 4 7 3.5399 1.1483 -0.0057 5 6 4.1864 -0.0002 -0.0058 6 7 3.5520 -1.1547 -0.0008 7 6 2.2226 -1.1988 0.0041 8 7 1.5583 -2.4157 0.0099 9 6 2.2809 -3.6060 0.1323 10 6 3.4442 -3.6391 0.8906 11 6 4.1555 -4.8168 1.0100 12 6 3.7105 -5.9625 0.3760 13 6 4.4895 -7.2457 0.5081 14 6 3.9903 -8.0157 1.7034 15 1 3.1893 -7.6157 2.3074 16 6 4.5569 -9.2305 2.0267 17 7 5.5327 -9.7173 1.2915 18 14 3.9376 -10.1853 3.5079 19 1 2.8377 -11.0907 3.0886 20 1 5.0488 -10.9878 4.0794 21 1 3.4340 -9.2365 4.5332 22 6 2.5553 -5.9318 -0.3836 23 6 1.8364 -4.7586 -0.5028 24 1 -0.3634 0.0048 1.0277 25 1 -0.3634 0.8876 -0.5180 26 1 -0.3633 -0.8924 -0.5096 27 1 1.6952 2.1329 0.0004 28 1 5.2664 0.0053 -0.0100 29 1 0.5919 -2.4411 -0.0712 30 1 3.7921 -2.7448 1.3863 31 1 5.0599 -4.8434 1.5998 32 1 5.5472 -7.0168 0.6392 33 1 4.3566 -7.8458 -0.3921 34 1 5.9311 -10.5720 1.5187 35 1 2.2129 -6.8272 -0.8811 36 1 0.9321 -4.7363 -1.0929 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651434630.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:30 Heat of formation + Delta-G solvation = 54.766607 kcal Electronic energy + Delta-G solvation = -19028.211534 eV Core-core repulsion = 16090.339811 eV Total energy + Delta-G solvation = -2937.871724 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.12757 -40.28841 -37.50543 -35.27982 -34.71591 -33.55146 -31.75588 -31.65094 -28.55052 -28.22608 -25.55094 -24.24277 -23.98131 -23.12729 -21.83634 -19.39950 -19.02136 -18.49463 -17.32959 -16.82219 -16.35523 -16.20448 -15.74038 -15.52715 -15.28188 -14.66976 -14.56107 -14.35377 -14.07755 -13.91252 -13.78472 -13.38499 -13.23504 -13.10373 -12.64741 -12.50125 -12.42900 -11.88124 -11.66355 -11.54140 -11.44214 -10.89204 -10.59592 -10.10890 -9.90480 -9.70641 -8.54405 -8.15328 -6.32333 0.01274 0.17130 0.60497 0.81849 1.40104 1.41296 1.52814 1.94644 2.40454 2.87058 3.07392 3.11527 3.32168 3.43895 3.70795 4.03844 4.06072 4.17743 4.21138 4.41188 4.62408 4.64233 4.69830 4.78904 4.88263 5.02770 5.12616 5.16510 5.30343 5.35639 5.43387 5.52208 5.58175 5.74224 5.81356 5.98552 6.11796 6.17303 6.31715 6.61981 6.80557 7.31510 7.36138 8.90350 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035573 B = 0.003607 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.920057 B = 7760.143339 C = 8012.646978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.243 4.243 3 C 0.165 3.835 4 N -0.571 5.571 5 C 0.315 3.685 6 N -0.587 5.587 7 C 0.407 3.593 8 N -0.638 5.638 9 C 0.132 3.868 10 C -0.112 4.112 11 C -0.117 4.117 12 C -0.078 4.078 13 C 0.058 3.942 14 C -0.527 4.527 15 H 0.055 0.945 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.966 3.034 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.113 4.113 23 C -0.137 4.137 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.199 0.801 28 H 0.210 0.790 29 H 0.431 0.569 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.000 1.000 33 H 0.004 0.996 34 H 0.265 0.735 35 H 0.122 0.878 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.286 21.151 -3.139 24.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.252 4.252 3 C 0.003 3.997 4 N -0.289 5.289 5 C 0.026 3.974 6 N -0.309 5.309 7 C 0.165 3.835 8 N -0.266 5.266 9 C 0.038 3.962 10 C -0.133 4.133 11 C -0.136 4.136 12 C -0.079 4.079 13 C 0.021 3.979 14 C -0.565 4.565 15 H 0.073 0.927 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.790 3.210 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.191 1.191 22 C -0.132 4.132 23 C -0.158 4.158 24 H 0.100 0.900 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.216 0.784 28 H 0.226 0.774 29 H 0.272 0.728 30 H 0.147 0.853 31 H 0.128 0.872 32 H 0.018 0.982 33 H 0.022 0.978 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.130 20.952 -3.155 23.933 hybrid contribution -0.715 -1.097 0.581 1.433 sum -11.845 19.854 -2.574 23.262 Atomic orbital electron populations 1.20620 0.86878 1.04404 1.03591 1.21293 1.00266 0.92258 1.11393 1.23445 0.89160 0.98633 0.88433 1.68460 1.10862 1.30499 1.19067 1.25100 1.01767 0.81575 0.88947 1.68205 1.08638 1.32212 1.21877 1.18756 0.88985 0.86521 0.89235 1.41849 1.09239 1.00329 1.75208 1.17532 0.94592 0.86001 0.98123 1.20956 0.95849 0.97370 0.99125 1.20899 1.00343 0.92213 1.00134 1.20366 0.96206 0.95392 0.95922 1.18073 0.93780 0.89963 0.96072 1.21397 1.18907 1.04282 1.11940 0.92703 1.25946 0.95055 0.98550 0.99944 1.70089 1.26104 1.20059 1.40852 0.85429 0.78070 0.78444 0.79012 1.19516 1.20565 1.19093 1.20911 0.94718 0.98078 0.99472 1.20955 1.02159 0.91502 1.01161 0.89984 0.88593 0.91187 0.78445 0.77402 0.72755 0.85308 0.87166 0.98204 0.97755 0.92595 0.85992 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 9.69 71.23 0.69 -0.17 16 2 C -0.24 -4.13 5.93 -19.56 -0.12 -4.24 16 3 C 0.17 2.76 10.99 84.56 0.93 3.69 16 4 N -0.57 -12.49 10.43 -200.30 -2.09 -14.58 16 5 C 0.31 7.43 12.28 180.90 2.22 9.65 16 6 N -0.59 -16.16 7.26 -197.53 -1.43 -17.60 16 7 C 0.41 9.70 7.21 133.12 0.96 10.66 16 8 N -0.64 -14.64 5.40 -185.02 -1.00 -15.64 16 9 C 0.13 4.06 6.31 38.19 0.24 4.30 16 10 C -0.11 -3.99 8.60 22.40 0.19 -3.79 16 11 C -0.12 -4.87 9.69 22.25 0.22 -4.65 16 12 C -0.08 -3.54 5.07 -19.84 -0.10 -3.64 16 13 C 0.06 3.18 5.10 29.10 0.15 3.33 16 14 C -0.53 -30.56 9.09 25.60 0.23 -30.33 16 15 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 16 C 0.00 0.17 5.46 84.65 0.46 0.64 16 17 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 18 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 C -0.11 -4.37 9.69 22.25 0.22 -4.15 16 23 C -0.14 -4.21 9.96 22.40 0.22 -3.98 16 24 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.10 0.46 8.10 -2.39 -0.02 0.44 16 26 H 0.07 0.54 6.60 -2.39 -0.02 0.52 16 27 H 0.20 1.72 8.06 -2.91 -0.02 1.69 16 28 H 0.21 3.88 8.06 -2.91 -0.02 3.86 16 29 H 0.43 6.86 6.91 -92.70 -0.64 6.22 16 30 H 0.13 4.41 6.27 -2.91 -0.02 4.39 16 31 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 32 H 0.00 -0.02 8.08 -2.39 -0.02 -0.04 16 33 H 0.00 0.24 8.08 -2.39 -0.02 0.22 16 34 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -71.52 310.86 4.76 -66.76 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.46 Total: 13.59 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 6.52 Total: -22.70 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -4.24 Total: -104.30 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -71.52 4.76 -66.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651434630.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.522 kcal (2) G-P(sol) polarization free energy of solvation -71.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds