Wall clock time and date at job start Mon Mar 30 2020 01:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31882 * 119.61857 * 2 1 4 4 C 1.31861 * 121.72456 * 179.70815 * 3 2 1 5 5 C 1.38221 * 120.76518 * 0.58353 * 4 3 2 6 6 C 1.38631 * 119.16077 * 359.45246 * 5 4 3 7 7 C 1.38184 * 119.61840 * 180.02562 * 2 1 3 8 8 C 1.50706 * 120.41854 * 0.02562 * 7 2 1 9 9 N 1.46506 * 109.46733 * 79.98165 * 8 7 2 10 10 C 1.38823 * 119.99720 * 180.02562 * 9 8 7 11 11 C 1.39792 * 119.58504 * 359.72433 * 10 9 8 12 12 C 1.38599 * 119.48994 * 179.79440 * 11 10 9 13 13 C 1.38387 * 118.67942 * 0.47528 * 12 11 10 14 14 C 1.40555 * 119.15001 * 359.74572 * 13 12 11 15 15 C 1.41316 * 119.78471 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99849 * 0.02562 * 15 14 13 17 17 C 1.40021 * 119.99978 * 180.02562 * 15 14 13 18 18 N 1.30748 * 120.00150 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00033 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47411 * 90.00190 * 19 17 15 21 21 H 1.48504 * 109.47081 * 210.00168 * 19 17 15 22 22 H 1.48500 * 109.47016 * 329.99571 * 19 17 15 23 23 N 1.31957 * 119.58093 * 179.97438 * 10 9 8 24 24 H 1.09004 * 109.47331 * 269.97257 * 1 2 3 25 25 H 1.09002 * 109.47262 * 29.97792 * 1 2 3 26 26 H 1.09007 * 109.47332 * 149.97696 * 1 2 3 27 27 H 1.08002 * 119.61352 * 180.29131 * 4 3 2 28 28 H 1.08002 * 120.42313 * 179.73507 * 5 4 3 29 29 H 1.07998 * 120.79047 * 180.27554 * 6 5 4 30 30 H 1.08994 * 109.47076 * 199.97605 * 8 7 2 31 31 H 1.08996 * 109.47065 * 319.98606 * 8 7 2 32 32 H 0.97003 * 120.00095 * 359.97438 * 9 8 7 33 33 H 1.08002 * 120.26057 * 359.97438 * 11 10 9 34 34 H 1.07995 * 120.66313 * 180.22761 * 12 11 10 35 35 H 1.08002 * 120.42478 * 179.77417 * 13 12 11 36 36 H 0.96999 * 119.99898 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1587 1.1465 0.0000 4 6 3.4764 1.1950 0.0057 5 6 4.2267 0.0341 -0.0001 6 6 3.5766 -1.1903 -0.0006 7 6 2.1899 -1.2013 -0.0005 8 6 1.4372 -2.5069 -0.0017 9 7 0.9857 -2.8090 -1.3623 10 6 0.2654 -3.9690 -1.6131 11 6 -0.0192 -4.8455 -0.5620 12 6 -0.7421 -6.0009 -0.8138 13 6 -1.1541 -6.2573 -2.1098 14 6 -0.8327 -5.3395 -3.1246 15 6 -1.2472 -5.5877 -4.4527 16 1 -1.8093 -6.4801 -4.6850 17 6 -0.9289 -4.6767 -5.4672 18 7 -0.2479 -3.5966 -5.1861 19 14 -1.4774 -5.0045 -7.2226 20 1 -2.8166 -4.4022 -7.4434 21 1 -0.5020 -4.4022 -8.1666 22 1 -1.5494 -6.4697 -7.4532 23 7 -0.1377 -4.2327 -2.8416 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 3.9752 2.1529 0.0103 28 1 5.3057 0.0803 0.0003 29 1 4.1367 -2.1137 -0.0006 30 1 2.0923 -3.3043 0.3491 31 1 0.5736 -2.4290 0.6588 32 1 1.1893 -2.1981 -2.0878 33 1 0.3191 -4.6227 0.4392 34 1 -0.9758 -6.6894 -0.0153 35 1 -1.7158 -7.1510 -2.3384 36 1 -0.0272 -2.9657 -5.8890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651472628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:44 Heat of formation + Delta-G solvation = 70.764752 kcal Electronic energy + Delta-G solvation = -19371.308791 eV Core-core repulsion = 16434.130799 eV Total energy + Delta-G solvation = -2937.177992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38171 -38.22995 -35.54203 -33.47646 -32.98201 -32.12903 -30.34662 -28.93379 -27.67085 -25.61826 -25.29799 -22.59233 -21.80115 -21.30858 -20.30921 -17.37730 -16.83101 -16.58643 -16.18567 -15.14031 -14.85711 -14.47830 -14.38250 -13.94363 -13.60283 -13.25067 -13.12589 -13.03279 -12.61882 -12.37608 -12.09721 -11.98157 -11.83694 -11.30177 -11.15299 -10.98428 -10.62674 -10.46873 -9.96837 -9.76518 -9.54477 -9.41343 -8.90786 -8.84853 -7.91397 -7.51108 -6.53929 -6.32501 -4.47348 1.03257 1.25561 2.87864 3.11766 3.14818 3.23369 3.30070 3.67749 3.98876 4.28814 4.40113 4.73531 4.78886 4.84939 4.92492 5.01251 5.41557 5.56584 5.69061 5.72928 5.78148 5.89392 6.06376 6.13498 6.15646 6.21096 6.34882 6.56199 6.69970 6.84673 6.88965 6.93041 7.25023 7.58639 7.80224 7.91024 7.97591 8.16216 8.34920 8.66185 8.80207 9.11299 10.24416 10.40367 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020708 B = 0.004777 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.781997 B = 5860.304241 C = 6653.165377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.149 3.851 3 N -0.490 5.490 4 C 0.101 3.899 5 C -0.185 4.185 6 C -0.055 4.055 7 C -0.148 4.148 8 C 0.186 3.814 9 N -0.734 5.734 10 C 0.411 3.589 11 C -0.368 4.368 12 C -0.031 4.031 13 C -0.316 4.316 14 C 0.292 3.708 15 C -0.434 4.434 16 H 0.083 0.917 17 C 0.071 3.929 18 N -0.715 5.715 19 Si 0.904 3.096 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.262 1.262 23 N -0.530 5.530 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.153 0.847 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.396 0.604 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 6.721 7.998 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.011 3.989 3 N -0.199 5.199 4 C -0.056 4.056 5 C -0.205 4.205 6 C -0.081 4.081 7 C -0.150 4.150 8 C 0.060 3.940 9 N -0.372 5.372 10 C 0.172 3.828 11 C -0.394 4.394 12 C -0.056 4.056 13 C -0.339 4.339 14 C 0.166 3.834 15 C -0.466 4.466 16 H 0.101 0.899 17 C -0.154 4.154 18 N -0.337 5.337 19 Si 0.729 3.271 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.186 1.186 23 N -0.252 5.252 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.171 0.829 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.231 0.769 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.043 8.206 7.422 12.607 hybrid contribution 0.358 -1.238 -0.308 1.325 sum 6.401 6.967 7.114 11.838 Atomic orbital electron populations 1.20863 0.88562 1.04578 1.03059 1.21250 0.97178 0.87581 0.92892 1.67565 1.09980 1.29300 1.13048 1.22730 0.89585 0.98369 0.94929 1.22090 1.01351 0.93443 1.03618 1.21572 0.93742 0.98613 0.94216 1.20863 0.94511 0.96438 1.03174 1.19842 0.96829 0.91179 0.86115 1.44130 1.61839 1.23909 1.07284 1.18490 0.88467 0.85175 0.90712 1.20595 1.19477 1.01791 0.97539 1.20590 0.94641 0.94833 0.95517 1.21538 1.14445 1.03858 0.94046 1.18191 0.86760 0.85814 0.92672 1.19587 1.30011 1.05966 0.91061 0.89893 1.26044 0.93961 0.94493 1.00860 1.70149 1.23745 1.06512 1.33291 0.86386 0.79155 0.79832 0.81751 1.19485 1.20275 1.18594 1.68204 1.19536 1.21854 1.15591 0.90469 0.90547 0.89208 0.82946 0.84901 0.84672 0.92169 0.91721 0.76920 0.89210 0.88948 0.88727 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.43 36.00 0.34 -1.19 16 2 C 0.15 2.15 6.78 -82.59 -0.56 1.59 16 3 N -0.49 -7.00 10.27 -9.48 -0.10 -7.10 16 4 C 0.10 1.18 11.18 -17.54 -0.20 0.98 16 5 C -0.19 -1.99 10.11 -39.44 -0.40 -2.39 16 6 C -0.06 -0.67 9.82 -39.28 -0.39 -1.06 16 7 C -0.15 -2.06 5.27 -104.48 -0.55 -2.61 16 8 C 0.19 2.88 4.15 -5.19 -0.02 2.86 16 9 N -0.73 -14.46 5.06 -61.57 -0.31 -14.77 16 10 C 0.41 9.87 7.65 -155.32 -1.19 8.68 16 11 C -0.37 -8.33 9.34 -38.87 -0.36 -8.69 16 12 C -0.03 -0.72 10.15 -39.39 -0.40 -1.12 16 13 C -0.32 -7.96 9.83 -38.65 -0.38 -8.34 16 14 C 0.29 8.12 6.55 -85.00 -0.56 7.56 16 15 C -0.43 -11.77 9.14 -37.74 -0.34 -12.11 16 16 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 17 C 0.07 1.84 5.50 -17.35 -0.10 1.74 16 18 N -0.72 -19.09 11.46 55.55 0.64 -18.45 16 19 Si 0.90 18.79 29.56 -169.99 -5.02 13.77 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 23 N -0.53 -14.56 7.89 -10.33 -0.08 -14.64 16 24 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.09 1.37 6.34 -51.93 -0.33 1.04 16 27 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 30 H 0.06 0.90 7.80 -51.93 -0.41 0.50 16 31 H 0.06 0.97 7.08 -51.93 -0.37 0.61 16 32 H 0.40 8.12 8.58 -40.82 -0.35 7.76 16 33 H 0.09 1.79 6.68 -52.49 -0.35 1.44 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 36 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 LS Contribution 309.64 15.07 4.67 4.67 Total: -1.00 -30.32 309.64 -9.62 -39.94 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -4.31 Total: 10.67 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -5.10 Total: -14.10 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.15 Total: -54.95 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.32 -9.62 -39.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651472628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.707 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds