Wall clock time and date at job start Mon Mar 30 2020 01:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31882 * 119.61857 * 2 1 4 4 C 1.31861 * 121.72456 * 179.70815 * 3 2 1 5 5 C 1.38221 * 120.76518 * 0.58353 * 4 3 2 6 6 C 1.38631 * 119.16077 * 359.45246 * 5 4 3 7 7 C 1.38184 * 119.61840 * 180.02562 * 2 1 3 8 8 C 1.50706 * 120.41854 * 0.02562 * 7 2 1 9 9 N 1.46506 * 109.46733 * 79.98165 * 8 7 2 10 10 C 1.38823 * 119.99720 * 180.02562 * 9 8 7 11 11 C 1.39792 * 119.58504 * 359.72433 * 10 9 8 12 12 C 1.38599 * 119.48994 * 179.79440 * 11 10 9 13 13 C 1.38387 * 118.67942 * 0.47528 * 12 11 10 14 14 C 1.40555 * 119.15001 * 359.74572 * 13 12 11 15 15 C 1.41316 * 119.78471 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99849 * 0.02562 * 15 14 13 17 17 C 1.40021 * 119.99978 * 180.02562 * 15 14 13 18 18 N 1.30748 * 120.00150 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00033 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47411 * 90.00190 * 19 17 15 21 21 H 1.48504 * 109.47081 * 210.00168 * 19 17 15 22 22 H 1.48500 * 109.47016 * 329.99571 * 19 17 15 23 23 N 1.31957 * 119.58093 * 179.97438 * 10 9 8 24 24 H 1.09004 * 109.47331 * 269.97257 * 1 2 3 25 25 H 1.09002 * 109.47262 * 29.97792 * 1 2 3 26 26 H 1.09007 * 109.47332 * 149.97696 * 1 2 3 27 27 H 1.08002 * 119.61352 * 180.29131 * 4 3 2 28 28 H 1.08002 * 120.42313 * 179.73507 * 5 4 3 29 29 H 1.07998 * 120.79047 * 180.27554 * 6 5 4 30 30 H 1.08994 * 109.47076 * 199.97605 * 8 7 2 31 31 H 1.08996 * 109.47065 * 319.98606 * 8 7 2 32 32 H 0.97003 * 120.00095 * 359.97438 * 9 8 7 33 33 H 1.08002 * 120.26057 * 359.97438 * 11 10 9 34 34 H 1.07995 * 120.66313 * 180.22761 * 12 11 10 35 35 H 1.08002 * 120.42478 * 179.77417 * 13 12 11 36 36 H 0.96999 * 119.99898 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1587 1.1465 0.0000 4 6 3.4764 1.1950 0.0057 5 6 4.2267 0.0341 -0.0001 6 6 3.5766 -1.1903 -0.0006 7 6 2.1899 -1.2013 -0.0005 8 6 1.4372 -2.5069 -0.0017 9 7 0.9857 -2.8090 -1.3623 10 6 0.2654 -3.9690 -1.6131 11 6 -0.0192 -4.8455 -0.5620 12 6 -0.7421 -6.0009 -0.8138 13 6 -1.1541 -6.2573 -2.1098 14 6 -0.8327 -5.3395 -3.1246 15 6 -1.2472 -5.5877 -4.4527 16 1 -1.8093 -6.4801 -4.6850 17 6 -0.9289 -4.6767 -5.4672 18 7 -0.2479 -3.5966 -5.1861 19 14 -1.4774 -5.0045 -7.2226 20 1 -2.8166 -4.4022 -7.4434 21 1 -0.5020 -4.4022 -8.1666 22 1 -1.5494 -6.4697 -7.4532 23 7 -0.1377 -4.2327 -2.8416 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 3.9752 2.1529 0.0103 28 1 5.3057 0.0803 0.0003 29 1 4.1367 -2.1137 -0.0006 30 1 2.0923 -3.3043 0.3491 31 1 0.5736 -2.4290 0.6588 32 1 1.1893 -2.1981 -2.0878 33 1 0.3191 -4.6227 0.4392 34 1 -0.9758 -6.6894 -0.0153 35 1 -1.7158 -7.1510 -2.3384 36 1 -0.0272 -2.9657 -5.8890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651472628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:44 Heat of formation + Delta-G solvation = 53.272685 kcal Electronic energy + Delta-G solvation = -19372.067304 eV Core-core repulsion = 16434.130799 eV Total energy + Delta-G solvation = -2937.936505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.39238 -40.03998 -37.03209 -35.27207 -33.95376 -33.50924 -32.20694 -30.61644 -28.78615 -27.29705 -26.77081 -23.74649 -23.27499 -22.75826 -21.97600 -19.26120 -18.23152 -17.73563 -17.26592 -16.72215 -16.49234 -16.07739 -15.57241 -15.38879 -15.03435 -14.79513 -14.62230 -14.02353 -14.00232 -13.73925 -13.51001 -13.37906 -13.09928 -12.85636 -12.72193 -12.59791 -12.31007 -12.22224 -11.74472 -11.30566 -10.79382 -10.68139 -10.41489 -9.84569 -9.81529 -9.42868 -8.30036 -8.21929 -6.46830 0.05157 0.29808 1.07344 1.36551 1.41503 1.54414 1.59058 2.25219 2.55564 2.93646 2.99590 3.36858 3.65284 3.85736 3.94197 4.05863 4.12131 4.39685 4.50287 4.56780 4.64335 4.67231 4.68247 4.77544 4.82887 4.99890 5.02561 5.12511 5.15070 5.20610 5.32332 5.37058 5.72701 5.76048 5.98276 6.07876 6.23243 6.55291 6.82708 6.92674 7.00770 7.21701 8.35558 8.51996 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020708 B = 0.004777 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.781997 B = 5860.304241 C = 6653.165377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.132 3.868 3 N -0.514 5.514 4 C 0.097 3.903 5 C -0.175 4.175 6 C -0.060 4.060 7 C -0.161 4.161 8 C 0.190 3.810 9 N -0.727 5.727 10 C 0.396 3.604 11 C -0.365 4.365 12 C -0.029 4.029 13 C -0.343 4.343 14 C 0.260 3.740 15 C -0.473 4.473 16 H 0.086 0.914 17 C 0.027 3.973 18 N -0.753 5.753 19 Si 0.984 3.016 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.256 1.256 23 N -0.565 5.565 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.184 0.816 28 H 0.169 0.831 29 H 0.151 0.849 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.389 0.611 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.101 0.899 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.538 7.161 8.716 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.006 4.006 3 N -0.224 5.224 4 C -0.060 4.060 5 C -0.195 4.195 6 C -0.087 4.087 7 C -0.164 4.164 8 C 0.065 3.935 9 N -0.362 5.362 10 C 0.156 3.844 11 C -0.390 4.390 12 C -0.053 4.053 13 C -0.366 4.366 14 C 0.133 3.867 15 C -0.505 4.505 16 H 0.104 0.896 17 C -0.194 4.194 18 N -0.375 5.375 19 Si 0.804 3.196 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.180 1.180 23 N -0.288 5.288 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.201 0.799 28 H 0.186 0.814 29 H 0.169 0.831 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.223 0.777 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.119 0.881 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.367 8.657 8.191 14.011 hybrid contribution 0.064 -1.285 -0.361 1.336 sum 7.431 7.372 7.830 13.072 Atomic orbital electron populations 1.20779 0.88784 1.03309 1.03660 1.21312 0.97389 0.88052 0.93798 1.67575 1.11523 1.29254 1.14049 1.23353 0.88888 1.00270 0.93535 1.22469 1.03104 0.92320 1.01578 1.21868 0.93104 1.00131 0.93560 1.20726 0.95339 0.95334 1.04959 1.19954 0.97286 0.92480 0.83749 1.44278 1.60736 1.22300 1.08874 1.18920 0.88546 0.86577 0.90398 1.20958 1.18409 1.01139 0.98535 1.21009 0.93378 0.95343 0.95581 1.21692 1.15880 1.04184 0.94879 1.18654 0.87487 0.86747 0.93833 1.19938 1.31497 1.07011 0.92011 0.89597 1.26930 0.93546 0.93817 1.05143 1.70254 1.24860 1.07466 1.34902 0.85192 0.78759 0.79853 0.75757 1.18867 1.19434 1.17956 1.68170 1.20661 1.22410 1.17549 0.88983 0.90773 0.91353 0.79860 0.81350 0.83115 0.91187 0.91323 0.77721 0.86136 0.85243 0.88052 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.94 9.43 71.23 0.67 -2.27 16 2 C 0.13 3.72 6.78 42.54 0.29 4.01 16 3 N -0.51 -14.03 10.27 -183.89 -1.89 -15.92 16 4 C 0.10 2.00 11.18 84.68 0.95 2.95 16 5 C -0.18 -3.20 10.11 22.36 0.23 -2.97 16 6 C -0.06 -1.34 9.82 22.47 0.22 -1.12 16 7 C -0.16 -4.33 5.27 -19.77 -0.10 -4.43 16 8 C 0.19 5.67 4.15 85.63 0.36 6.03 16 9 N -0.73 -28.78 5.06 -348.71 -1.76 -30.54 16 10 C 0.40 19.18 7.65 133.42 1.02 20.20 16 11 C -0.36 -16.09 9.34 22.73 0.21 -15.88 16 12 C -0.03 -1.29 10.15 22.39 0.23 -1.07 16 13 C -0.34 -17.55 9.83 22.87 0.22 -17.32 16 14 C 0.26 14.90 6.55 40.18 0.26 15.17 16 15 C -0.47 -26.49 9.14 23.46 0.21 -26.27 16 16 H 0.09 4.53 7.85 -2.91 -0.02 4.50 16 17 C 0.03 1.43 5.50 85.29 0.47 1.89 16 18 N -0.75 -41.37 11.46 21.84 0.25 -41.12 16 19 Si 0.98 39.16 29.56 68.60 2.03 41.19 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 21 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 22 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 23 N -0.57 -31.97 7.89 -186.59 -1.47 -33.44 16 24 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.07 2.13 6.34 -2.38 -0.02 2.12 16 27 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 28 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 29 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 30 H 0.07 1.96 7.80 -2.39 -0.02 1.94 16 31 H 0.07 2.00 7.08 -2.39 -0.02 1.98 16 32 H 0.39 16.36 8.58 -92.71 -0.80 15.57 16 33 H 0.12 4.49 6.68 -2.91 -0.02 4.47 16 34 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 35 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 36 H 0.27 13.72 8.29 -92.71 -0.77 12.95 16 Total: -1.00 -67.52 309.64 2.70 -64.82 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 0.31 Total: 36.09 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 5.24 Total: -21.09 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -4.87 Total: -121.02 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -67.52 2.70 -64.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651472628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.095 kcal (2) G-P(sol) polarization free energy of solvation -67.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds