Wall clock time and date at job start Mon Mar 30 2020 01:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31784 * 119.08496 * 2 1 4 4 C 1.32545 * 121.00864 * 179.97438 * 3 2 1 5 5 C 1.38116 * 119.20104 * 0.02562 * 4 3 2 6 6 C 1.39622 * 118.33347 * 359.97438 * 5 4 3 7 7 N 1.38537 * 120.53254 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99822 * 359.97438 * 7 6 5 9 9 C 1.50706 * 109.47254 * 179.97438 * 8 7 6 10 10 C 1.38639 * 119.74839 * 89.99873 * 9 8 7 11 11 C 1.37620 * 120.24897 * 180.23652 * 10 9 8 12 12 C 1.40715 * 119.74131 * 359.51904 * 11 10 9 13 13 C 1.41399 * 120.24183 * 180.22985 * 12 11 10 14 14 H 1.07996 * 120.00044 * 204.52621 * 13 12 11 15 15 C 1.39950 * 119.99773 * 24.53568 * 13 12 11 16 16 N 1.30821 * 119.99991 * 17.71280 * 15 13 12 17 17 Si 1.86800 * 119.99756 * 197.70913 * 15 13 12 18 18 H 1.48506 * 109.46742 * 59.99979 * 17 15 13 19 19 H 1.48505 * 109.46999 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47336 * 300.00007 * 17 15 13 21 21 C 1.40715 * 119.51261 * 0.47567 * 12 11 10 22 22 C 1.37609 * 119.74608 * 359.75586 * 21 12 11 23 23 N 1.31753 * 119.07739 * 180.25314 * 2 1 3 24 24 H 1.09007 * 109.46603 * 89.99950 * 1 2 3 25 25 H 1.08993 * 109.47596 * 209.99728 * 1 2 3 26 26 H 1.08994 * 109.47013 * 330.00443 * 1 2 3 27 27 H 1.08008 * 120.40050 * 180.02562 * 4 3 2 28 28 H 1.08000 * 120.83108 * 180.02562 * 5 4 3 29 29 H 0.96998 * 120.00612 * 179.97438 * 7 6 5 30 30 H 1.08994 * 109.47496 * 60.00354 * 8 7 6 31 31 H 1.09001 * 109.47672 * 299.99665 * 8 7 6 32 32 H 1.08000 * 119.87572 * 359.95847 * 10 9 8 33 33 H 1.07993 * 120.12561 * 179.72165 * 11 10 9 34 34 H 0.97005 * 119.99803 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.12510 * 179.73128 * 21 12 11 36 36 H 1.08002 * 119.87647 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1477 1.1517 0.0000 4 6 3.4724 1.1961 0.0005 5 6 4.1863 0.0138 0.0005 6 6 3.4768 -1.1887 0.0005 7 7 4.1468 -2.4012 0.0000 8 6 5.6116 -2.4287 -0.0012 9 6 6.0873 -3.8587 -0.0009 10 6 6.3034 -4.5119 -1.2045 11 6 6.7332 -5.8193 -1.2163 12 6 6.9628 -6.4896 -0.0006 13 6 7.4091 -7.8313 -0.0004 14 1 7.2153 -8.4647 0.8526 15 6 8.1021 -8.3384 -1.1055 16 7 8.6394 -7.5194 -1.9726 17 14 8.2598 -10.1846 -1.3422 18 1 6.9070 -10.7858 -1.4601 19 1 9.0333 -10.4607 -2.5794 20 1 8.9638 -10.7749 -0.1756 21 6 6.7401 -5.8165 1.2150 22 6 6.3058 -4.5108 1.2028 23 7 2.1474 -1.1515 -0.0051 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3634 -0.8899 0.5137 26 1 -0.3633 0.8900 0.5137 27 1 3.9873 2.1456 0.0009 28 1 5.2663 0.0193 0.0013 29 1 3.6463 -3.2321 0.0004 30 1 5.9852 -1.9218 0.8885 31 1 5.9839 -1.9218 -0.8915 32 1 6.1297 -3.9944 -2.1363 33 1 6.8966 -6.3277 -2.1550 34 1 9.1194 -7.8709 -2.7388 35 1 6.9091 -6.3229 2.1538 36 1 6.1338 -3.9924 2.1345 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651984720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:41 Heat of formation + Delta-G solvation = 57.133567 kcal Electronic energy + Delta-G solvation = -18705.562952 eV Core-core repulsion = 15767.793868 eV Total energy + Delta-G solvation = -2937.769085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73130 -38.02307 -36.15442 -33.94236 -33.23251 -31.97115 -29.96740 -29.41353 -28.23871 -26.83481 -23.96845 -23.57521 -21.71590 -21.15609 -20.12351 -17.89816 -17.45903 -17.04440 -15.50743 -15.19009 -15.12684 -14.82060 -14.32983 -14.18356 -14.04559 -13.50647 -13.05385 -13.02106 -12.61236 -12.38425 -12.32218 -12.11089 -11.67614 -11.27444 -11.17246 -10.94770 -10.72392 -10.58501 -10.51370 -9.79926 -9.62022 -9.52318 -9.28640 -9.03784 -7.88504 -7.64942 -7.54228 -6.93294 -4.53450 1.19463 1.57572 2.46930 2.91502 2.97096 2.98279 3.02651 3.49030 3.80706 4.02115 4.22034 4.45720 4.54032 4.97365 5.31546 5.48629 5.49602 5.52321 5.53777 5.59576 5.67337 5.87182 5.92504 6.01131 6.15807 6.24172 6.48954 6.79832 6.91091 6.94906 7.10290 7.18746 7.43701 7.48343 7.66669 7.85831 7.89058 7.92413 8.12433 8.46398 8.47305 8.71902 8.79327 10.00617 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042803 B = 0.003163 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.000502 B = 8848.885898 C = 8999.080156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.354 3.646 3 N -0.575 5.575 4 C 0.174 3.826 5 C -0.304 4.304 6 C 0.440 3.560 7 N -0.695 5.695 8 C 0.188 3.812 9 C -0.251 4.251 10 C -0.078 4.078 11 C -0.170 4.170 12 C 0.119 3.881 13 C -0.457 4.457 14 H 0.080 0.920 15 C 0.076 3.924 16 N -0.785 5.785 17 Si 0.911 3.089 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.230 4.230 22 C -0.066 4.066 23 N -0.585 5.585 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.160 0.840 28 H 0.140 0.860 29 H 0.408 0.592 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.284 0.716 35 H 0.094 0.906 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 9.690 1.218 11.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 N -0.296 5.296 4 C 0.012 3.988 5 C -0.333 4.333 6 C 0.195 3.805 7 N -0.324 5.324 8 C 0.066 3.934 9 C -0.253 4.253 10 C -0.097 4.097 11 C -0.189 4.189 12 C 0.116 3.884 13 C -0.486 4.486 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.410 5.410 17 Si 0.735 3.265 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.250 4.250 22 C -0.085 4.085 23 N -0.311 5.311 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.178 0.822 28 H 0.157 0.843 29 H 0.245 0.755 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.419 9.680 0.991 12.237 hybrid contribution 1.160 -1.186 -0.193 1.670 sum -6.259 8.494 0.798 10.582 Atomic orbital electron populations 1.20511 0.86343 1.03704 1.03516 1.22854 0.97480 0.82891 0.88308 1.68219 1.09935 1.29765 1.21687 1.22776 0.89548 0.97729 0.88698 1.22130 1.02284 0.93052 1.15840 1.18742 0.88128 0.87455 0.86195 1.45416 1.06998 1.04507 1.75512 1.20109 0.76947 0.96225 1.00091 1.18840 1.17614 0.94871 0.93957 1.20543 0.98867 0.95197 0.95106 1.21310 1.04591 0.94227 0.98794 1.17678 0.87207 0.92584 0.90942 1.19662 1.30628 0.96419 1.01842 0.90203 1.25974 0.93083 1.00597 0.94711 1.69808 1.23394 1.37226 1.10548 0.86320 0.79519 0.82086 0.78607 1.18662 1.20190 1.18851 1.20964 1.12119 0.94807 0.97105 1.20389 0.98168 0.94737 0.95204 1.67812 1.07872 1.31189 1.24220 0.89960 0.89958 0.89900 0.82239 0.84252 0.75540 0.92454 0.92373 0.89406 0.86344 0.90526 0.88820 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.32 36.01 0.37 -0.48 16 2 C 0.35 5.11 7.64 -157.24 -1.20 3.91 16 3 N -0.58 -8.20 10.33 -10.81 -0.11 -8.31 16 4 C 0.17 2.20 11.29 -17.29 -0.20 2.01 16 5 C -0.30 -4.16 9.40 -39.11 -0.37 -4.53 16 6 C 0.44 6.96 7.71 -154.78 -1.19 5.77 16 7 N -0.69 -11.13 5.70 -61.45 -0.35 -11.48 16 8 C 0.19 3.04 5.04 -5.19 -0.03 3.01 16 9 C -0.25 -4.98 5.27 -104.32 -0.55 -5.53 16 10 C -0.08 -1.70 9.67 -39.66 -0.38 -2.08 16 11 C -0.17 -4.18 8.70 -38.87 -0.34 -4.51 16 12 C 0.12 3.01 5.57 -106.82 -0.60 2.41 16 13 C -0.46 -11.57 9.06 -37.74 -0.34 -11.92 16 14 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 15 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 16 N -0.79 -19.40 10.95 55.55 0.61 -18.79 16 17 Si 0.91 17.84 29.59 -169.99 -5.03 12.81 16 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.28 -5.29 7.11 56.52 0.40 -4.88 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 C -0.23 -5.35 9.80 -38.88 -0.38 -5.73 16 22 C -0.07 -1.38 9.67 -39.66 -0.38 -1.76 16 23 N -0.58 -9.43 10.37 -9.97 -0.10 -9.53 16 24 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 28 H 0.14 1.66 6.87 -52.49 -0.36 1.30 16 29 H 0.41 6.82 8.59 -40.82 -0.35 6.47 16 30 H 0.06 0.86 7.91 -51.93 -0.41 0.45 16 31 H 0.06 0.89 7.92 -51.93 -0.41 0.48 16 32 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.12 3.03 6.16 -52.49 -0.32 2.70 16 34 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 35 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 312.83 15.07 4.71 4.71 Total: -1.00 -27.11 312.83 -10.31 -37.42 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -4.36 Total: 10.87 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -5.67 Total: -17.71 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.04 Total: -48.11 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.11 -10.31 -37.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651984720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.556 kcal (2) G-P(sol) polarization free energy of solvation -27.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds